RNA id: TU124581


Basic Information

Item Value
RNA id TU124581
length 1499
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G92634
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 22005630 ~ 22007152 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTGTTTGGTCTTTAAAGTTTCTCAGGCTGATACAAAAAAGCTCAATTTACACCATTGTGTAAAGTAATACAACTGacaaaaaatacatcaaatacttattattgtacatttaatgCAAAGGCATAACCATATAATActatacaatacatacaaaaataataacaagtgTCTTTATGAGGGGATAACCCTGAATTCAGTTTGACAGATAAATGCCAAAATGATAAGCACATCATTAACATTCAGAGTAACAGGAGAGTGCTGTTAATAAATAAGTGGATCAGTTTCAAAGTTCTAAACAATGATTCactcagttcagttttttttctgttaattcAACACACTTAAGAGGCTCCCAAGCCCCTTTTGTTAAGTGTCAGAGGAAATGTGTAGCACCATGAAAAAAATACTGTCTGTATAAGAGCCATCACACACGCAGCTGCCCTCAGCTCAACACAACCTGCAAAGCAAGAACACCAAAGAAACAGGCAGAGAGTAATTAAACCTACAAAGAAAATACAggaaataatagaaaaatagaagagtatgaaaaaaaaaatcagtgtttcttacttttattttgtcatttatttgattgcagacagtgtgaacccaagatatttcatcaTTTGTCTGGTTagcttaacattttttatttaaaggcacaccatattataaggcacactattattgaacatctattttctggtctattttcatatagaGGGTGCACtttaagcaacaatagtaaggaacaggggtgtcgccatgtttctcttTTAATGGGAAAGCGTCTAAGTTAACAAAAccttaattctttaaaaatgagcgttggatgttaatctacacagatttctctcttaaaaactgtttatttgggtgggtAAATGACTTCTGTTTTTTCACAGTAAGTttacattttcaatattttcaacagcgcagttagcaacagtgcttaccgctgacagtgctacactgaggaatactgttctggtaagccagggcgctatcaactagtggttcgtcccacttTGCTTGTTTTagcatggtaaacatgcaggctacagtccaatatactcacctctgaacagccaagGAGCTAACGCTGCggttagcagttaatgctaatactgcttcagcctcagAGCTGGAGAAAAACTTcagtgaaactcctgtataattctTTATTTCactggagtggctttactgcttcttactacatgactggtagaattcatacataaggcacactgtcgatttttggaaaaatgtaaggattttaagtgcgacttatagtgcgaaaaatatggtcattttatttgttaataaatgtacattCCTCCAtgtcaggcctgcaacacatttcaAAACTAGAGTCCGTAATGCTATGGGGTTGTgtcatgctgcacacattacagtCAGGTCTATGGTAAACAAGGATACAggaacttgactggcctgccTGCAGTTTAGATTGTGTGGACAAAAATATGACAATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124554 lncRNA upstream 54600 21893260 ~ 21951030 (+) False G92615
TU124553 lncRNA upstream 54600 21928449 ~ 21951030 (+) False G92615
TU124555 lncRNA upstream 54600 21928449 ~ 21951030 (+) False G92615
TU124540 lncRNA upstream 86469 21918578 ~ 21919161 (+) True G92605
TU124432 lncRNA upstream 202616 21795532 ~ 21803014 (+) True G92536
TU124592 lncRNA downstream 60489 22067641 ~ 22067996 (+) True G92645
TU124594 lncRNA downstream 78058 22085210 ~ 22085542 (+) True G92647
TU124595 lncRNA downstream 84426 22091578 ~ 22091887 (+) True G92648
TU124627 lncRNA downstream 99861 22107013 ~ 22107343 (+) True G92669
TU124641 lncRNA downstream 245867 22253019 ~ 22253231 (+) True G92683
XM_007254513.3 mRNA upstream 230007 21770369 ~ 21775623 (+) True tfpt
XM_007254516.3 mRNA upstream 238270 21747323 ~ 21767360 (+) True LOC103046806
XM_022673757.1 mRNA upstream 285459 21703591 ~ 21720171 (+) True LOC103045162
XM_022673755.1 mRNA upstream 307480 21686025 ~ 21698150 (+) True LOC103043132
XM_022673765.1 mRNA downstream 648681 22655833 ~ 22662537 (+) False irx2
XM_007254530.3 mRNA downstream 648682 22655834 ~ 22662537 (+) True irx2
XM_007254531.3 mRNA downstream 861950 22869102 ~ 22874060 (+) True LOC103025323
XM_007254532.3 mRNA downstream 970760 22977912 ~ 23023100 (+) True LOC103025629
XM_007254533.3 mRNA downstream 1033786 23040938 ~ 23066260 (+) False slc6a3
TU124348 other upstream 653627 21269165 ~ 21352003 (+) True G92462
TU124346 other upstream 653627 21275163 ~ 21352003 (+) False G92462
TU124347 other upstream 653627 21275163 ~ 21352003 (+) False G92462
TU124179 other upstream 1060124 20941426 ~ 20945506 (+) True G92350
TU124129 other upstream 1184240 20819150 ~ 20821390 (+) False LOC103032252
TU125154 other downstream 2690981 24698133 ~ 24708374 (+) True G93079
TU125228 other downstream 2907537 24914689 ~ 24965444 (+) True G93135
TU125312 other downstream 3304725 25311877 ~ 25313707 (+) True G93185
TU126114 other downstream 4941311 26948463 ~ 26948879 (+) True G93753
TU126349 other downstream 5912442 27919594 ~ 27939020 (+) False LOC111193309

Expression Profile