LOC103032975


Basic Information

Item Value
gene id LOC103032975
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 9667721 ~ 9681516 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673353.1
ATGGATCTGGAAGGCCTTAGACATGTTCTTCAGTCGCTGGTACGTCACCAGGATTTTCTTATAGCGGAACAGCACGCCAGCAGCATCTTTCACTACTCTCCTCCTCTTCAGTGCCGGGTGGCCTACACTGGGTCTCCCAGGAGCTCCCATATTCCGCAGAGCCAGGTTTTCCGACATTACATCCTCCCCGGACATCATTTCCTCTTCCTCCAGTACAACTATAAAATGCTCAGACTGACCTTCGAAGCTCTGTTCACTCTGGTTGTAGAAACCGCCCTGCTGATCAAAGTTGTTCTCCTCAAAAGGTATGGAGATTTCATACGAGTCCTCATTTTTGGGAGCTTTAAAGAAGAAAGTACGGTCATCATGTCAACTGAGAATGAAGGCCTGGCTCACTGTAAACTCATCCTGCTGTTCGCTGTGCTCATGGATCTCCTCGGCATTACTGCTGTCCTGGTTGGAGTGTTTGCCCCGCTGGAGGTTAAAGGTCGTGATTTTGGGGATCTGCTGGTGTACTCGGGTGTGCTGCTGGTACTAATCTCAATGGGAGGCTGGGTCATGTGGTACAGTGGGAACATTGAGGGCTTGACCTCAGCTACAGAGCTGGGTTATAAACCAGGAGCAATAGATCGCCTGGCTCGCACGCTCAGTCAGCGCATACGCAAGAGTCGCCGCCGCAGCCACGCTACACCCTGACCCCTCTCACATTAAAACAGGCCTCAAACTAAGTGGATTAGAATCTTAAAGACAAGATAATAATCAGTGTAATTCTGCAACGTTCAGTGTTCTAAGAACAATCAtctttctctaaaaaaaaaacacactgccaAGAGAAACTGTACTGCTGAGACAACACTTTAAACAATCATGCTAACAGAAAATGCTCATTTGTTtacataataaatgttttgataaGTTATGAAACCatttagtttacatttttgtatgtattatgtTTGACAGGTGCTGATATTATTAATCATGCACCACTTATATCATTATAAGTACATAAACCTTTATTGTGGTTCAGAATATTATCATAATagtattttaagaaaaatactgaatatgtaaaataataaaattatgcaTAATTAGTGTTTCTCTCTGTAAATGAATTTCATCAGAAAAACATTAACAAAGCACTTGTCtttctaatttctttttttttactgtactgctttgtaattgtaatttctCATTATGTGACAGGGAAGACAACTGGACTATTTAATGGGATAAAGAATAACTGACATGTCAACATGACAAATGTACAGATAGAAATGGTATACTCTTAAGTTTTTTTAtaatgcatgtttaaaagttactgtgatatatatgtttttacattgaaGTAAATCaatcttaaaaattattttaaatggctGTGTCTAGTGGGCAGCAACACCACATTTCTTGTGACAGACTAGGGTTCAATTTACCACTACGACTCCTTGGGAAAAACTCTAATTACATTCACCTACCTGCGTAACATGAATTAGCTGTAAGtcactttatataaaaaatgtcacattaacaaatgtaaatgttaattaacaGACCCCTACTTCCATCACTGTTGTTTTTCCCTGTAAATTCCCTAAGAACTGTATTTACCTACATATACACTATGTGCAGGGAGAGTTAGACAGatatttgtaataaagtggaaaaaatcaactcattaaaacatttttataaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673353.1 True 1703 mRNA 0.38 4 9667721 9681516

Neighbor

gene id symbol gene type direction distance location
LOC103033935 NA coding downstream 40642 9620792 ~ 9627079 (-)
LOC103035109 NA coding downstream 66457 9588054 ~ 9601264 (-)
LOC103035430 LOC108429015,LOC108273951,LOC107741974,LOC107596682,LOC107684164,LOC107656700 coding downstream 85578 9544171 ~ 9582143 (-)
ecm1 NA coding downstream 128348 9531182 ~ 9539373 (-)
LOC103044521 LOC108429011,LOC108268485,LOC107684166,LOC107596688 coding downstream 137818 9506442 ~ 9529903 (-)
LOC103031716 LOC107748790,LOC107685510,LOC107596678 coding upstream 3713 9685229 ~ 9703502 (-)
gtf3c6 gtf3c6 coding upstream 238206 9919722 ~ 9921779 (-)
LOC103024539 NA coding upstream 390119 10071635 ~ 10076554 (-)
rpl18 rpl18 coding upstream 408888 10090404 ~ 10094413 (-)
LOC103039397 LOC103039397 coding upstream 414260 10095776 ~ 10098446 (-)
G89561 LOC108429016,LOC108268427,LOC107748717,LOC107596738,LOC106576890 non-coding downstream 11218 9654483 ~ 9656503 (-)
G89543 NA non-coding downstream 33595 9632576 ~ 9634126 (-)
G89549 NA non-coding downstream 59073 9603627 ~ 9608648 (-)
G89536 NA non-coding downstream 71459 9594119 ~ 9596262 (-)
G89531 NA non-coding downstream 163545 9503965 ~ 9504176 (-)
G89580 NA non-coding upstream 40468 9721984 ~ 9735423 (-)
G89689 NA non-coding upstream 187447 9868963 ~ 9890217 (-)
G89696 emg1,LOC107699927,LOC107744679,LOC107748869,LOC107748863,LOC107685516 non-coding upstream 233414 9914930 ~ 9918017 (-)
G89698 nop2,LOC107749104,LOC107699935,LOC107685519 non-coding upstream 243357 9924873 ~ 9927817 (-)
G89709 NA non-coding upstream 283893 9965409 ~ 9966449 (-)
G88789 NA other downstream 2425151 7241711 ~ 7242570 (-)
LOC103026131 LOC108431006 other downstream 2452482 7103571 ~ 7215239 (-)
G88779 NA other downstream 2549595 7117661 ~ 7118126 (-)
vstm2a vstm2a other downstream 2935057 6676275 ~ 6732664 (-)
G88465 NA other downstream 5072396 4595058 ~ 4595325 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 103107 9784623 ~ 9854099 (-)
G89690 zyx,LOC108428910 other upstream 213309 9894825 ~ 9901700 (-)
G89708 gapdh,LOC107550818 other upstream 279766 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 330301 10011817 ~ 10042853 (-)
G89751 NA other upstream 542004 10223520 ~ 10224663 (-)

Expression


Co-expression Network