LOC103026131 (LOC108431006)


Basic Information

Item Value
gene id LOC103026131
gene name LOC108431006
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7103571 ~ 7215239 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU119423
CCGTTGCCTTTCTGCAGAGAGAAATCCACAAGCCAGTGAAAAAACACCTAGTCAACCGATAAATCTCCCTGTTCACAAACACCAAGTTGAGCAGGACCTTATCCCAAAGGACAAGCAGCCGGCTGAAGCTGATCCAGATCACAGGCTACACCAGTGCTCAGTCTGTAACAAAGGTTTTCATAAAAGATCAGCTCTGAACAGACACCAGAGTGTGGCCCACACAGATGTCCATTTTGACGATATTCCGCATGACTGCACTCAGTGTGGAAGGACGTTTGCTCGATTAAGTGAGCTCACGGTTCATCAGAAGGTTCACGTTGGAGAGAAGTGTTATGAATGCAGCTACTGTAAGAGAACTTTCAGGCAAAAAGGAAGCTTAAAGAGGCACGAGCAAGTTCACTGTGACGAGTGTCGCCTCAAGTGTTTTGAGTGTGGGAAGAGGTTTAATCGCTCAAAAGATCTACTGGTTCACCAGCGAATACACACAGGAGACAAACCTTACAAGTGCcaagagtgtgggaagagttttcgTCAGAAAGGACATCTGACCATGCACAGGCCTGTTCACTCAGGTGCGAAGCCTTATGAGTGCCCAGTCTGTCACAAGAGTTTCTCTTACTCTTCTTCCATGAAGAAACACAAACGGACAGTTCACAAGGaTGTTGACATAGAAGACTACATCAAGAAAGAATCAGAAAATATACCCTAAACAGAAAGCTCAGGAATTGCAAGCTTCAACAACAAAGACCCTTAACAGTGAAGAGAGGGTAGTGGACAGTAACTTGAATCAGAACATCAGCGCCCCAGTCTGGAGGTACTAAACGCAGTAGTCTGGAACTGGAAATTACAGGACATTTAACAATATTCTATTGTCTCTGGTTGAAATAAGTGCTAGTAACAAGTAGTGACAGCATTTCCAGTTCCAGCAGTTCCATCTAGTGCCAGTCCTATTAGTTGCTTCTGTTTAACCTGTTAAAATGACATAAGCTGACAGTCACAGATAcaggtctttaaaaaaaaatccttcctGTAagtttatctctctatctaacTTTCTGAGGATGAATTCTGTAGAAAGATAGACCTCCAAGAGAATTGCTTATGGCCACTTATTTTAGACGACACCCCCTAAAAAAAGCACATAAAAGcctaatacagtaatataaatactgtactctagtttaaagaaaaaataaaacactaggTAATAAGTATAGTAATGCTTCCCAACACAGGATTTCTAAAGTAATGTGTGAAGTGAATCTTTTGCTGTCCGCATTTTTGTTTTGATCATAGAACTGTAATTTGTCAAACTGTAATATCTGAAGAAGAGTGCCatataaatagaaagaaattaaaacgccttgttttaaagtattttgaaAACTCAGCAAC
>XM_022673435.1
GATCATTCTAGTAGTCATTTAGACAGTatacttcagtttttttttttgttgttttttttttacattggtgTAAGATCTAGAAATCTGATTAAGAAATCCAATAAAGAGAGCTGGATACATTCAGTAAGCTTACTAATGTTAATTCTCAGTGCATTCTCAGTACACTCTATAGCATATTAAATAATCTATTATTCCTAGATTTCTTAGACTGTGCATATGTGAAAACAGACAGTAGTAccgaaaacacacaaacagcattCAACACATCCCCTGCAAGATGCTCACAAAACAGAGCAGGGCTGAAACTGAaggatttatttaaataagcaATATCTTTTAGCTGATATGTTCAAGCTCTAGGCTCATATTGCTGCTTGTtttgataaaaaatgaataaataaagcattagGTTTTTCATGATGTTTAAAACATGTCTTATTCTGTGAGATTAGTGAGATTACTGGCTGGTTCCAAAGCAACAATCCAATTATTGCCTGACTCATGTAAACTTAAAGCTTGCccattatctgattacccaaGTTCATGAAAACACTTTGATCAGTTTACTGACAAACCTTTGGTGAACTTGgtggtataatttttttttttacattgcacgATTTACCTCTGCAATATCTACTGGAATGTAATTTTCCCATTATCTGATTtcacaagttcatgttcatgtgTTGAGAGGATTACGAACTctgatgttctgcagtaatcgGATTATGTATTGCATGTAAATGTGTACAGTGTCTCCGGAGAAAGGTGCAGGTGATCTAATTGATATTTCTTTTCAGGTGTCCCCAAAGTGAAGGCCCGTTGCCTTTCTGCAGAGAGAAATCCACAAGCCAGTGAAAAAACACCTAGTCAACCGATAAATCTCCCTGTTCACAAACACCAAGTTGAGCAGGACCTTATCCCAAAGGACAAGCAGCCGGCTGAAGCTGATCCAGATCACAGGCTACACCAGTGCTCAGTCTGTAACAAAGGTTTTCATAAAAGATCAGCTCTGAACAGACACCAGAGTGTGGCCCACACAGATGTCCATTTTGACGATATTCCGCATGACTGCACTCAGTGTGGAAGGACGTTTGCTCGATTAAGTGAGCTCACGGTTCATCAGAAGGTTCACGTTGGAGAGAAGTGTTATGAATGCAGCTACTGTAAGAGAACTTTCAGGCAAAAAGGAAGCTTAAAGAGGCACGAGCAAGTTCACTGTGACGAGTGTCGCCTCAAGTGTTTTGAGTGTGGGAAGAGGTTTAATCGCTCAAAAGATCTACTGGTTCACCAGCGAATACACACAGGAGACAAACCTTACAAGTGCcaagagtgtgggaagagttttcgTCAGAAAGGACATCTGACCATGCACAGGCCTGTTCACTCAGGTGCGAAGCCTTATGAGTGCCCAGTCTGTCACAAGAGTTTCTCTTACTCTTCTTCCATGAAGAAACACAAACGGACAGTTCACAAGGaTGTTGACATAGAAGACTACATCAAGAAAGAATCAGAAAATATACCCTAAACAGAAAGCTCAGGAATTGCAAGCTTCAACAACAAAGACCCTTAACAGTGAAGAGAGGGTAGTGGACAGTAACTTGAATCAGAACATCAGCGCCCCAGTCTGGAGcaggAACCTACACACTGCACATCGTTATAAGGAATCTTAAAGATGGTGATACTGAAGTCACTGACGTTGCTCCTGCTCCTCGCCTTCAAACAGTCAGTAGAAGAAGAGGATATTCGAGCAGGCTGCAGCACGGCCGTAAATGATCTTGTGTACATCGTGGACGGCTCTTGGAGTGTGGGTGAAGAAGACTTTGAGACCGCTAAGCGCTGGCTGGTCAATGTCACCAGTGGCTTCGACGTGAGTTCACTCTACTCTCAGGTGGCCGTGGTGCAGTACAGTGACTCTCTTCGTCTGGAGATCTCATTGGGCGAGCACCAGAGTGCCCGAGAGCTGATCAGGGCTATCTGGGAGATCAAGTACCTCGGTGGTAACACACAGACAGGCCGTGCCATCAAGTTTGCGGTGGACCACGTCTTCGCGTCCTCCCAGCGCGGCGACACTGTAAAGAATCGCATTGCTGTGGTGGTGACGGATGGGAAGTCTCAGGATGATGTGGTGGATGCCAGCGAGGAGGCTCGAGCTCAGGGGATCATCGTGTTCGCAGTGGGAGTGGGCTCAGAGATCACAAGCTCAGAGCTGAAGGCCATCGCTAACAAACCGTCCAGCGACTATGTGCTGTACGCCGCCAACTACACCACCATCGATCGGATTCGTGACTCAATGGAGCAgaagctttgtgaagAGTCTGTTTGTCCCACGCGGATCCCTGTAGCCTCTAGGGATGAGAAGGGCTTTGAGCTGATACTGGGGATGATGATCCACGAAAAGGCCAAGAAGATCCATGGCTCCCTGGGGTCTGAGACAGCCTACCTCCTGGACAAAGGTGTGGATATTACTGAGCAGACAAgggATATCTTCCCAGAAGGTCTTCCTCCATCCTATGTGTTTGTGGCCACTATCCGGCTGAGGGGGGCTGCAATCACGGAGAAGTTTGACCTTTGGAGAGTGCTCTCTAAAGACAGAGAAACACAAGTGGCTGTGATGCTACATGGGAAAGCCAAGACGGTCACTTTCACTACCACAGACACAAGAAGTCTGGAACAAAGAGCTACTTTCAAGGCACAGGATATTCAGAGACTCTTTGACGGAGGCTGGCACCAACTGAAGATCCTGGTTCGGCCGAGGCGCGCCATCTGTTATGTGGACGACAAGGAAATCCAAGAGTTGGACCTGGAGCCAGTTGTGCCCATTTACATCAATGGGAAGACTCAGATTGCCAAACGCTATGTTTCTGAGGCCACGGTTCCTATCGAAATCCAGAAACTGAGACTCTATTGCGACCCGATGCAAAGCGAAAGAGAGACGGCATGTGAAATCTACTCAGTGGATGATGAGAGGTGTCCTCTCGACCGGACGCCGCCCGAGGACACAGAGGAGGAGTGTGACTGTGGTGACGGAATTCCTGGACCACCCGGACCACCAGGACCAGCTGGTCCACCCGGACCTCCTGGGCTGAAGGGGGAGATAGGACAGGATGGACTCCCAGGCCCTGACGGTAAGCCTGGCATGAAAGGTGAGCAAGGAGTGACGGGGGAGCCAGGTAAATCAGGGGAGAAGGGGGAATCTGGTTTACTTGGACCCAAGGGTGATGCAGGAATAAGGGGCCACAAGGGTGATAAAGGACATGCAGGTTTACCCGGCAGGCCAGGCCTACCAGGACCGAAGCCACCTCAAGGTGAGAAAGGTGAACAAGGACCCCCTGGAAAGCCTGGCCCAAAGGGAGATCCAGGACTTCCTGGTTTTGCAGGACCAGCTGGCCCAGCGGGACTACAGGGCGATAAAGGCGATGCTGGGTTGCCTGGGCCAGTGGGACCAGTAGGACCaccaGGAATCCGTGGACTTCCTGGAGAGGAGGGCTTGGATGGACCTCAGGGGGCCAAGGGAGCACCTGGACAGAAAGGATCCGCTGGACCTAAAGGACCTCCGGGCATCCAAGGCCCCCCAGGGTCCCCTGGAGCAGATGGACAAATGGGTCCCAAGGGTAAAACAGGGGAGCAGGGGCTGGCTGGTCTTCCAGGTGCTCCAGGGCAAAAGGGCATGCAGGGCAGTCCAGGTCTTCCAGGGTTACGTGGGGTGATGGGTCCTACCGGGTTTAAAGGACATAAGGGACAAATGGGAGAACCTGGTCTTAAAGGCAATGAGGGAGAGAAAGGCAGCGAGGGGTCTCCTGGAGTTCCTGGACCGATGGGTGAAGCCGGACCCAGGGGAAGCAAAGGAGAGAGAGGTACTTCAGGAGAAACTGGGCCTAGAGGTCTGGATGGGAAGAAAGGGGACACCGGACACATAGGAATAGTCGGACCACGTGGCTCTCCTGGTCAAGATGGGTTACCAGGCCAGCCTGGTGTTCCAGGCTATGCTGGGAAACCTGGGAAGTCTCCATCTGATGAGCACTTAATAAAGATCTGTGGTGATGTTCTGAGGCATCAGCTACCCCAGCTGCTACAGACCATGCTTCCTCGGAGCTGCGAGCGTTGTGAGACAGTGAAGGGACCCCCGGGACATCCCGGAGTGCCAGGACCAAAAGGGTCCAGTGGTCCTCCAGGGTACCCAGGCAGACTGGGCCCGCAAGGTTACCCGGGGTCTCCTGGTCCGCAGGGACCTTCAGGAGTCAAAGGCGACATGGGATTGAGGGGGTATAAAGGCATCAGAGGCGAAGGCAGACCAGGACAGCCTGGGCCTCCCGGACATACAGGCATCCAGGGTCCGCGTGGCAGTGATGGAATCGGACTGCCGGGTCCTCCGGGAATGCCGGGGAAATCTGGATCTCCGGGCATCCCAGGAAAACGAGGCGCCCCAGGCCCAGCTGGAGTGTGTGACATGTCCATCTGCTACCAGGCTTACAACCTTAGGGAAGACCGCTACAGCAAAGGACCTAACTTCTGACACACATTACGTCAATTCCTTATGACAAGCACCTCAGAGTACTGATTTGGGATTGGTTCATCCTCCTACTTTAATGAAATCAAATCCTAGAATCTAATATCCTCAGATATCTTCACCCTCAAAAAGTTCCAAAAAGGTTTCATTTGGAAACTCTTCAATGGATTGTTCTTTAAGGAAACATTTCTGCGTGTGATATTTTTGAAGCtaaagactatatatatatatattgtttaatgtaaAGGTCCTGTTACaaagtttttattgttttttgtttttcctcatACAGTGCTTTCAAGCCAGGGCATTATTTTAGAAGCTTTTATTTCTAAGAGTGCTGAGTAAGCGCTGGCTACAGTGTTGAGCAAGGCAAGGCAAATCCAGTGGACATTTGGtatggttaaataaaaaaagtttaataattaaaaaaaaaatcagcttctGTAGACGTTAGGGATGCAACGGTTCAGTGTGGCCACGGTTCGGTTCGTATTGCGGTTCTTGGGGCACGGTATCGGTTCGGTTtcgatatatcaatattatctAACTCCAACATGCAGTACCTTTTTAGCCCtttctatttcaaatcaacAAGGTGCTCCTACTCACACTTGCAGAGCCAattaataaatggaaaaaaggcACAGATAAATTCTAATCAcaatatctattataaaaaaGGAACACTTATTCTTACTATTAGTCAAAAATAGGCAACTGATATCACACTGCGCTTTATCTGCTGACTGTCTTTTTACCTTGTTAATCAAACTCGACGCTGAAGCCAAAATGCTCCCAATCAGCGGATTTATAAATTTCCTTTTCTCCGTTTCGCGTTCACTCGCCATGATCACGCAGCTGAGAACGTTTTGTTTAATTATCCCTTAAATCTTCAGCATCTGCCTTCAGAGTGCTGATTCGCTCTTGGGAAATTCAGAAAAATTCTGATTGGTTGCTGCATGGTTGTGGAGAGACACGCTGAGggaagtatataaaaaatagtctCCCCCGGGTCCTAAGCAGTCCTGATTATCGCCCAATACACAGCATGTGTCCAATCAATaaccacaaataaaacattaaagttttGTCACCAGCGAGCCAAATAAGGACCAGAACCAGACACAGACAGCTGTACaaactcaaatgattttttttaacagggaaTAAGCAAATTCAAATTAAAGTATTGCCTTGTGGAGCAAAGACAAGCCCCTTCCACCCCAGCACGCTCTCAGCAGCCCCTCCTCCTTGCCTTTTACTAGGCTGTGCATTCAGCACCATATAAATTACAGCGGGAGAGCGTTCGTTCGCTCTGTTAGTGCGCACCGAATTACCGCTGTCCATCCGGGTGTATCGAACTGAACTGGCCGAACCAAacggttaaaaaaaaagaaccgtTGTATCCCTAGTAGATGTACAACTGTAGTACTTTTAACAATGATGTTGACCTGCCAGGATCAGATGTTTAAACATGTGtttatcaagtttttttttgtttttactggaGCTGTGTTGTACTGAGTTTGGTGTTGTAATTAAAAATGGAGTAGATGACAGGAACTCAACCAATGTTTCTGGACGTAGCTCTAGAGTAAAACTCAAGTAGCAAACTTATTTAAACTACAAAGACTGTATGTCTTGACTAAATACTAAATGTTTATTGAACAACCACATCTAGAGAGGGTGAGAAACTTTGTGGTAATATCTTTTTGATAAATCATTCCTTTAAGTAAAAAATAGTGTAGTCACTTTCCTATAAAATGAGctttaatgcaacaaaaaaagacaGCCATACTGACTGACttgtggtctaaaaaaaaatgttgaataataCATTTTGAATGGGCTTCTTTTAAAGACAAGGTAAGATTATGTTGATGATcgtttttgttaaatattttaaaagtaatgataAAAGCTGGTgatggtcattaaataattaatggcTGTTCATGTCGGCTTTTTTAATGTTCAAAGAGAATAGTGTGTACATATTTGCAGTGCCTGAGGAAAGCTACCTCCATGCTGGACGTACATTCTATAAGAAGACCAAATGCAATATACGAATATAAAAATccatgcttttttaaataagagaccacttaaaaatgatgagtttctttgattttaccaagttgaaaacctctgtaatata

Function

NR:

description
PREDICTED: collagen alpha-1(XXI) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119423 False 1395 lncRNA 0.41 4 7209748 7214417
XM_022673435.1 True 6674 mRNA 0.46 32 7103571 7215239

Neighbor

gene id symbol gene type direction distance location
LOC103026452 NA coding downstream 2112 7099238 ~ 7101459 (-)
LOC103045308 LOC108431216,LOC108271758 coding downstream 696549 6277116 ~ 6407022 (-)
stk17a stk17a coding downstream 828261 6227605 ~ 6275310 (-)
impa2 impa2 coding downstream 877971 6211898 ~ 6225600 (-)
LOC103047759 LOC108431241,LOC108271803,LOC107655677 coding downstream 897102 6002319 ~ 6206469 (-)
lancl2 lancl2 coding upstream 121489 7336728 ~ 7398583 (-)
LOC103034175 tgfbr1,tgfbr1b,LOC108441711,LOC107757190,LOC105890151,LOC106590284 coding upstream 214760 7429999 ~ 7514588 (-)
LOC103025816 NA coding upstream 320739 7535978 ~ 7550381 (-)
reck reck,LOC108441710,LOC106590283,LOC106579676,LOC107655684 coding upstream 342243 7557482 ~ 7636308 (-)
LOC103025511 LOC108441709,LOC108271601 coding upstream 427817 7643056 ~ 7698012 (-)
G88749 NA non-coding downstream 62980 7040248 ~ 7040591 (-)
G88742 NA non-coding downstream 135285 6968062 ~ 6968286 (-)
G88707 NA non-coding downstream 442556 6660621 ~ 6661015 (-)
G88706 NA non-coding downstream 443012 6660297 ~ 6660559 (-)
G88690 NA non-coding downstream 613296 6490009 ~ 6490275 (-)
G88824 NA non-coding upstream 110226 7325465 ~ 7382097 (-)
G88833 NA non-coding upstream 199819 7415058 ~ 7415485 (-)
G88923 NA non-coding upstream 383563 7598802 ~ 7642778 (-)
G89035 NA non-coding upstream 854165 8069404 ~ 8069620 (-)
G89029 NA non-coding upstream 860645 8075884 ~ 8079057 (-)
vstm2a vstm2a other downstream 370907 6676275 ~ 6732664 (-)
G88465 NA other downstream 2508246 4595058 ~ 4595325 (-)
G88458 NA other downstream 2537367 4565850 ~ 4566204 (-)
lyrm4 lyrm4 other downstream 3412023 3606430 ~ 3691548 (-)
LOC103033691 LOC108431537,LOC108266640,LOC107600138,LOC107713778,LOC107687503,LOC107683489,LOC107734392 other downstream 3749696 3336557 ~ 3353875 (-)
G88789 NA other upstream 26472 7241711 ~ 7242570 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 2569384 9784623 ~ 9854099 (-)
G89690 zyx,LOC108428910 other upstream 2679586 9894825 ~ 9901700 (-)
G89708 gapdh,LOC107550818 other upstream 2746043 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 2796578 10011817 ~ 10042853 (-)

Expression


Co-expression Network