LOC103025511 (LOC108441709,LOC108271601)


Basic Information

Item Value
gene id LOC103025511
gene name LOC108441709,LOC108271601
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7643056 ~ 7698012 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673434.1
GGATCTATCCAGCAGTTAGTGCTGACTCCAGACCCGCGAGCCCCTGATGAGCAGTGTGAGGAGGATGACCCCTATGCATCTGGGTACGGCAGTGGGGATGACGTATATGATGACACAGAGACGATGGACGAAGTGAAGAAAGTAGTAGAGGAGAGAAAATTCCCCCTGcaggaagaggaggaagatgagACCATTCCTGTCAGAGCGCCCCCTACTGAAGCATCCGCTGTAGCTCCATCTGATGATGAGGACCTGGAGGAGGAGGGGTCCTCTGGACAAGAGATTGAGGTCATCAATGAGAAAAaACCAACCAAGATGGAAGAAGCAGTTTATCAAAAAGGAGACGAGTACCCCTTAATGGTGCCAGGACACAAAGGAGAGAAAGGAGAACGAGGAGATCCTGGACCTCCTGGAGCTCCAGGACTTCCAGGCACATCTAGTCCATCAGGTCCAAGAGGAGACAACGCCGAATGGTTTGGAACGCCAGGAGCACAGGGCCCACCAGGACCTCCCGGCACTCCAGGGAAAGATGGCCTACCTGGCAGCCGTGGAAATGATGGAGCACAAGGTGAAACTGGAACTCCAGGTTTTCCAGGCCTTCCAGGTGATCCAGGACTCAAAGGGGAAAAGggtGATGCTGGAGTTGGTCAACCTGGACCACCTGGGCCTCCAGGACCACCAGGACGATCAGGGAGGATTCCATACGTGGATGCCATTGATGGCTCTGGATTTGAGGACTTTGACAGCGATACTGAAGTCATCAGGGGTCCACCGGGTCCTCCAGGGCCTCCGGGGCAGCCTGGCCCTCCTGGCTCCTCCGCAGGTCTCTCTCAAGGACCAACAGGGCCTCCAGGAGCACCTGGGAAAGATGggaaggatggagagatgggTAAACCTGGAATCCCAGTAATTGAGGACTGGTTTAGTGGTTCTGGATTTGATGCTGGTTCTGCATTAGATGTTGAGTCTGGAATTGAGGCTGGGTCTGCATTTGAGCTGCTTGCCTCAGAGCTGGACCTAGTTGAGGGTATTAATGGCAGGGATGGTCAACCAGGACAAGAGGGATTGAAGGGAGAGAAGGGTGAAGCAGGGTTGCCTGGACTGGCAGGGTCAAAGGGTGATCCAGGCCAGCCAGGTGTCCCAGGACTTCCAGGACCTGTAGGACCAGAAGGTCCGAAGGGGCAGCCAGGTCTTCCAGGACCACCTGGGCCTCCAGGCCCACCAGCACGCTTCAGTTTTGATGCCCTGGATTCTGAAGGCTCAGGACTGGGTGCAGGCAGTGGTTTCGGGCCCATGCTCCCTAAAGGGCCACCTGGTCTTCCAGGCCTACCTGGCCCCAGAGGACCACAGGGTAAAGATGGTGCGGATGGTCCTCCTGGTGCCTCAGTAAAGGGGGAGCCTGGACCTCAAGGACCGGATGGGTTACCTGGACCACCTGGGCTTCCTGGAAGAAATggagagagaggagagaaaggtgATATGGGAGAGAAGGGAGAGAGAGGTCAGGATGGGCTTAGTCTTCCTGGCCCACCAGGGCCACCCGGACCACCAGGACCTGTCATTAACCTCCAGGATTTAATGCTGAATGACACTGATGGCGTCTACAACTTCTCAGGGATTTATGAACCAGTGGGGCCAAGAGGTCCAAAGGGTGACACTGGAGTTCAGGGTGCTCCAGGCctaaaggGTCAGAAAGGCGAACCAGGCATCACACTTGCTGCAGATGGGACTGTCTTATCTGGAGTGACGGGGCCGCAGGGGCCGAAAGGAATGAAGGGTGAAATTGGTGTCTCTGGACCTCCTGGAATAAGAGGCCCTGTCGGACCAGCCGGACCTAAAGGGGAATTTGGGTTTCCTGGACGTCCGGGTCGTTCTGGTATAAATGGACGCAAGGGAGAAAAAGGAGACTCGTCTGGACTACCGGGCCCACCTGGTCCTCCTGGCCCACCTGGACGTCCTGGGATATTTAGCTGCCCTAAAGGAACAGTGTTCCCGGTTCCTCCTCGGCCTCACTGCAAGAAGACTATCAATGGAGATTCTACTTCAGAGGGAGCTAACTGTACATCCTCAGGAGCCAAAGGGGAGAAAGGTGAAAGAGGGCTCCCAGGGCCCCCTGGACCCGCAATTCCGATGCTGGAAGCAGGCAGTACGgGGCAGAAAGGTGACCTGGGCTTCCGGGGAGAGAAAGGGGAGAACGGAGAAGCCGGCATGCCAGGGCTACCTGGAAGATCTGGGCTTGTGGGTCCTAAAGGAGATTCCATCATTGGGCCTCCTGGTCGTCCAGGACTACAGGGACCTCCTGGAGCCCCTGGCATTGGGCGAGCAGGTGCGACTGGACCACCAGGACCACCTGGACCCCCCGGGCCACCTGGCTACAGCTCCGGTGCTGCTTACCCTGGCCCACCTGGGCCACGTGGACCTCCTGGTCCACCTGGACAAGCTTCTACATCCTCTAGCTCAGTAAAGAAATACTCAAGCCTAGAAGCATTGAAGCGTGATTCATACATGGAAGAAGTGGGGACATTCGCCTTGGTTACAGACAcatataaactctacctcaaaGTGTCAGGAGGTTGGAGAGAGATTCAGCTGGGAGGACTGGTGGAGGTGTATCCTTCTCAGTTCCTGTCACAGGATGATGCTGGCCCCTTAATGCTGACCCCTCGACTCAGCAATACCCCTACAATCCACACAGGAAGTGCGCTCAGGCTGGTTGCCCTGAACACGCCACAGACTGGGgacctgggctccatccactcAGCGAACAGGCAGTGCCGGCTGCAGGCTCAGGCTATGGGGATACGAGACGTGTACAAGGCCTTCCTCTCTCACCACCTGCAGGACCTGAGCGACGTGGTGCAGGCACCCTACCGCACCAGCATACCCATCGTTAACCTCAGGGGTGAGATTCTGTTCAAGAACTGGGAGAGCATCTTCTCCAACCATCTCCTCCCTTCTGGGATCCCCCTCTACTCGTTTGATGGACGGGATGTGATGAGCGATCCCTTCTGGCCACAGAAGGCCATATGGCACGGTTCCTCAGAGGGTGGCAGGCGTCTGGATGATAAGAACTGCGAGTCGTGGAGGGCAGGCGACATGGCCATCACCGGTCAGGCTTCCTTCCTCTACAGCGGCCTGCTGAGTCAGCAGACCCGCAGCTGCTCCAACCACTTCATCATCCTGTGCATCGAGACCAGTCCCGACCACAACACCATCGAAGAGCTCAGACGGGCACAGTACCGCCACAGACGCTGGCATTACAGATACTAACGTCTGTGCCACACTACACAGCCTCTGCCACCAGACTGTCAACATTCCAGAAGGTGTAAATATACGTAAGCTGATCGAAGACCACATCCATTCGTCCAGAAGCCAATAAGCCGCCACAGTGCGGCTCTTTTATCAGGTTTTCACCACATGGACATCCGTAGCAAAAGCAAAGCCATTTCTCTCCGAATGTAAAGTGGCGTGACGTCcgtgtctcagcagagggatGCACCGGGCCTCAACCCCAAACTCGCTATTTTGATGCActgtattttctcatttttcttattttgtttttcagttccGATTCTCCAAATCCATAGATGTCTGCTTTTTTTGTTACATCGAGTCATCGTTTCATCTTGAATAACAAAAGTGtcagtatttaatttaatttcagtgttttttatttatacctgACCGCACATAATCTAAATATGTCAGAAAGATTAAGGATGAATATGTAATTTATAGTTCCAGTTGTTCAGATGAACCCTGCTCCTGTTTTAATGCCTCATTGATAAAAGAGAAGATTTTATACGGCATCTCTGTTGATGAaaatgattttccttttttttgtagctCATGGAAATGTGACTGCAGATTGTTTTTCCAGAGCGTAAAAAGTCCTTTCTTTCCAGTGTGCATCAATTTTAGAACTAAAAACttgagcagtgtttagagaGGAggagtattttttattgtaactgGTGCCTATGGAATAAAACCTCTTTTTCAAATA

Function

NR:

description
PREDICTED: collagen alpha-1(XVIII) chain-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673434.1 True 4009 mRNA 0.53 40 7643056 7698012

Neighbor

gene id symbol gene type direction distance location
reck reck,LOC108441710,LOC106590283,LOC106579676,LOC107655684 coding downstream 6748 7557482 ~ 7636308 (-)
LOC103025816 NA coding downstream 92675 7535978 ~ 7550381 (-)
LOC103034175 tgfbr1,tgfbr1b,LOC108441711,LOC107757190,LOC105890151,LOC106590284 coding downstream 128468 7429999 ~ 7514588 (-)
lancl2 lancl2 coding downstream 244473 7336728 ~ 7398583 (-)
LOC103026452 NA coding downstream 541597 7099238 ~ 7101459 (-)
kynu kynu,LOC107558516 coding upstream 7990 7706002 ~ 7735457 (-)
boll NA coding upstream 48862 7746874 ~ 7760984 (-)
iqcb1 NA coding upstream 163423 7861435 ~ 7873399 (-)
ccdc14 NA coding upstream 176914 7874926 ~ 7885865 (-)
LOC103027002 LOC108430032,LOC107705485,LOC107706665 coding upstream 387557 8085569 ~ 8115611 (-)
G88923 NA non-coding downstream 278 7598802 ~ 7642778 (-)
G88833 NA non-coding downstream 227571 7415058 ~ 7415485 (-)
G88824 NA non-coding downstream 260959 7325465 ~ 7382097 (-)
G88781 NA non-coding downstream 465442 7175374 ~ 7177614 (-)
G88780 NA non-coding downstream 494087 7131763 ~ 7148969 (-)
G89035 NA non-coding upstream 371392 8069404 ~ 8069620 (-)
G89029 NA non-coding upstream 377872 8075884 ~ 8079057 (-)
G89036 NA non-coding upstream 381052 8079064 ~ 8079780 (-)
G89038 NA non-coding upstream 383361 8081373 ~ 8081590 (-)
G89067 NA non-coding upstream 544338 8242350 ~ 8244544 (-)
G88789 NA other downstream 400486 7241711 ~ 7242570 (-)
LOC103026131 LOC108431006 other downstream 427817 7103571 ~ 7215239 (-)
G88779 NA other downstream 524930 7117661 ~ 7118126 (-)
vstm2a vstm2a other downstream 910392 6676275 ~ 6732664 (-)
G88465 NA other downstream 3047731 4595058 ~ 4595325 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 2086611 9784623 ~ 9854099 (-)
G89690 zyx,LOC108428910 other upstream 2196813 9894825 ~ 9901700 (-)
G89708 gapdh,LOC107550818 other upstream 2263270 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 2313805 10011817 ~ 10042853 (-)
G89751 NA other upstream 2525508 10223520 ~ 10224663 (-)

Expression


Co-expression Network