iqcb1


Basic Information

Item Value
gene id iqcb1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7861435 ~ 7873399 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673450.1
CGTTGCTTTAGAAACCGGGTACGCTGTGTTAGCTGTACTGTGAGGATAAGCTAGCAGCAAATTCTGCTCCCggacattaaaacacacagcgATACAGCGCCCGTTTAAACTCGCAGCTGAACATGCTGGTATGAATCGATATAAGATTTTGGCACCTGAAATATACAGGTTATATTAGCAAACGCGCCTCAGTTAGTTAAACTAACATACAGCTCGAATGGGGTCTtcaggagaagaggaggaggatatAATCTCAGTCCTCAAAACTCTCAGCGCTGAAAAATCTgaacacagttttaaacacGTCTTATCAAAGACTAAAGAGCTTCTCAGCAGAAAATCTGTGGGAGATCTGCGGGATCTGGAAAGATGTAAACAAGACCTTTATCAGCATGGCGTACTGGCCTACTGCTCTGCTGCCCTAAGGTTCAACCCTGTAAAAACCGAAGGGAGTTATGCCTCTATTACACAGATGGTAGATGTTATCAGCACATGCTGTGTAGGTATCGGTTCTGTGAGAAACAGAGAAGTCTTTCTTCACCAGTTTCTTCCTTCAGTGACAGAAAACCTGCTGTTCTTTGCTCACCGTCTTATGAACAGAGTGGAAAAGGGACAAACTGAGATGTTCCGTCTCTTTAGGAAAGTCTTTGATTCGCTCAGCTGGATTCTGAGGGCTTACACTCATTTAATTTCCTGTGTGCTCAAATCCAAACATTATGAGAGCGTGCAGATGAGTGAGGATGATGAAGTGTCTGCAGTTGTACTAATGATGTGGTACAATCTGTTCAGGGTAAACAGTGAGATTATATCTGAGATGGGTAGAAAAGCACTGGGCAGCGTTGTGGATGACGTTGTGTATAAAAGTTCCAACAGCACCAATCCTGTGATCGGCAGCTCCGCCACCAAAATTCTGCTGCTAATTATAGATCAGCACAGCCAGTCTCTACAGATCCTCCACAAACACTACAAAGGGTTGGATGATTTGTTGAGGAAGGACTGGCAGGGTAAGGGCTTTGATGCAGTGTTGGAGCAGCTCATTAATCATCTACAGTCAGAAGTTCCAGAAAGAAGCATTAAGGTTCAGCGCTCATCTGAGGAGAAAATTCGAGCAGCATGTGTGATCCAGGCAGCCTGGAGAGCCCATCAGACCAGAAACAGAATGAGGAAACTTCCCAAAGCCGTCAGTGCGCTACAGCGGAGCTTCAGagagagaagaagacgTCAGCAAGAGGAGACCGACAAACGTCGTGCAGAGGAGGAGTTACGCCATCAAGTGCTTCTGCGCAGACAGCGGGCCACTCGCCAGTTCCGCCAACGCCAGCTCCACCTGATGGAGATCCTGCCTGCTGACCAGGTGGCACGATACCTGGGTGAGTTGGAGAACAGAGCGGCTCTGCTGATCCAGAGAGTATGGAGAGGACACCGAGAGAGACAGTGCTTTCAGAAAACTAAATACCAGCTCAGACAGCACAAAGCTGCAGTGACCCTGCAGAGAGCTattttGAGGTTCCTAAAGCGACGAAGATCTCAGAGGATGATTCTGTCACCGTGGAAAGGCCCCAAAGGCCTGACTGATAACAGGAGAGCAGAACTCAGGAGACAGATAGAGGAGCACATCTCCCTCCATTCTTCCTCGGTGGTGTCAGTAGAGGGTACTCAAGAGCTCCATGAGAAAGCCCAGAGTATGCTGCAGCAGCACCTTATGACCAGAGCTCATGATCGGGCCCAGGAGCAGCACAGGCAGGCTCTGCTGGCGCAGATCAACACAGACATAGAGCTTCTTCTGAATGCTCCCTCTCTAATAGATGCTGTTGAGGACAAGTCCAGCCCTTTCCTGAGCCGATCCGCAGCAGTTGCCATGCGCGCCCGGCAATCCCACAATGTAATGCTACAGAGCATGCGACTGCCCTGGTGGAGAAAGCTGGGAGATGAGTTTTCCGATCCAGAGACGCTGCCTCGTGAAGACCTTCTCTTTGACTCTTTGTATCTAGGTGGGAACTTGTAGCTTCATAATGTGATTCATGATAtcagttgtgtttttgtcagacaaagagttattttattattgatttttttgtacAAGACCTGTCTGGTTTGCGTCATGCACTGACATTGAAAGAATGAGAGTAATTTTCTATTGGCTTTGAATTAGTAGcttataaataaagcttataaaaatgaaatccattATCTGCCAATAACAGATTTGTGAAAATCTGCAAGCTTTTCAATGAGTATTCCCAGGGTCAGATGGTTTGTCTGACTCTAAAATGGTAGTAAGTGGAAGCTAATAGCCTGTCCCTATCTGTCTACTAGCAAAAATTCTAGTTATACAAGGTATATAAGATTATAAAGCAATGATTTTTACACAGATAGATTAAGAAGATTTTGTGTCCCTTTTTACCCACTTTTATATTGATGAGACCAGTCACTGAtttatataaaagtattttactgCCCATGGCCCCTTTTTCTTTGGAAAAGGGGATCTTTATTCCTTCAAAGAAATGAGGCTTTTAGCAAACCTCAATAAAAAAACCACtaatttattactttt
>XM_022673452.1
CGTTGCTTTAGAAACCGGGTACGCTGTGTTAGCTGTACTGTGAGGATAAGCTAGCAGCAAATTCTGCTCCCggacattaaaacacacagcgATACAGCGCCCGTTTAAACTCGCAGCTGAACATGCTGGTATCAGTTAGTTAAACTAACATACAGCTCGAATGGGGTCTtcaggagaagaggaggaggatatAATCTCAGTCCTCAAAACTCTCAGCGCTGAAAAATCTgaacacagttttaaacacGTCTTATCAAAGACTAAAGAGCTTCTCAGCAGAAAATCTGTGGGAGATCTGCGGGATCTGGAAAGATGTAAACAAGACCTTTATCAGCATGGCGTACTGGCCTACTGCTCTGCTGCCCTAAGGTTCAACCCTGTAAAAACCGAAGGGAGTTATGCCTCTATTACACAGATGGTAGATGTTATCAGCACATGCTGTGTAGGTATCGGTTCTGTGAGAAACAGAGAAGTCTTTCTTCACCAGTTTCTTCCTTCAGTGACAGAAAACCTGCTGTTCTTTGCTCACCGTCTTATGAACAGAGTGGAAAAGGGACAAACTGAGATGTTCCGTCTCTTTAGGAAAGTCTTTGATTCGCTCAGCTGGATTCTGAGGGCTTACACTCATTTAATTTCCTGTGTGCTCAAATCCAAACATTATGAGAGCGTGCAGATGAGTGAGGATGATGAAGTGTCTGCAGTTGTACTAATGATGTGGTACAATCTGTTCAGGGTAAACAGTGAGATTATATCTGAGATGGGTAGAAAAGCACTGGGCAGCGTTGTGGATGACGTTGTGTATAAAAGTTCCAACAGCACCAATCCTGTGATCGGCAGCTCCGCCACCAAAATTCTGCTGCTAATTATAGATCAGCACAGCCAGTCTCTACAGATCCTCCACAAACACTACAAAGGGTTGGATGATTTGTTGAGGAAGGACTGGCAGGGTAAGGGCTTTGATGCAGTGTTGGAGCAGCTCATTAATCATCTACAGTCAGAAGTTCCAGAAAGAAGCATTAAGGTTCAGCGCTCATCTGAGGAGAAAATTCGAGCAGCATGTGTGATCCAGGCAGCCTGGAGAGCCCATCAGACCAGAAACAGAATGAGGAAACTTCCCAAAGCCGTCAGTGCGCTACAGCGGAGCTTCAGagagagaagaagacgTCAGCAAGAGGAGACCGACAAACGTCGTGCAGAGGAGGAGTTACGCCATCAAGTGCTTCTGCGCAGACAGCGGGCCACTCGCCAGTTCCGCCAACGCCAGCTCCACCTGATGGAGATCCTGCCTGCTGACCAGGTGGCACGATACCTGGGTGAGTTGGAGAACAGAGCGGCTCTGCTGATCCAGAGAGTATGGAGAGGACACCGAGAGAGACAGTGCTTTCAGAAAACTAAATACCAGCTCAGACAGCACAAAGCTGCAGTGACCCTGCAGAGAGCTattttGAGGTTCCTAAAGCGACGAAGATCTCAGAGGATGATTCTGTCACCGTGGAAAGGCCCCAAAGGCCTGACTGATAACAGGAGAGCAGAACTCAGGAGACAGATAGAGGAGCACATCTCCCTCCATTCTTCCTCGGTGGTGTCAGTAGAGGGTACTCAAGAGCTCCATGAGAAAGCCCAGAGTATGCTGCAGCAGCACCTTATGACCAGAGCTCATGATCGGGCCCAGGAGCAGCACAGGCAGGCTCTGCTGGCGCAGATCAACACAGACATAGAGCTTCTTCTGAATGCTCCCTCTCTAATAGATGCTGTTGAGGACAAGTCCAGCCCTTTCCTGAGCCGATCCGCAGCAGTTGCCATGCGCGCCCGGCAATCCCACAATGTAATGCTACAGAGCATGCGACTGCCCTGGTGGAGAAAGCTGGGAGATGAGTTTTCCGATCCAGAGACGCTGCCTCGTGAAGACCTTCTCTTTGACTCTTTGTATCTAGGTGGGAACTTGTAGCTTCATAATGTGATTCATGATAtcagttgtgtttttgtcagacaaagagttattttattattgatttttttgtacAAGACCTGTCTGGTTTGCGTCATGCACTGACATTGAAAGAATGAGAGTAATTTTCTATTGGCTTTGAATTAGTAGcttataaataaagcttataaaaatgaaatccattATCTGCCAATAACAGATTTGTGAAAATCTGCAAGCTTTTCAATGAGTATTCCCAGGGTCAGATGGTTTGTCTGACTCTAAAATGGTAGTAAGTGGAAGCTAATAGCCTGTCCCTATCTGTCTACTAGCAAAAATTCTAGTTATACAAGGTATATAAGATTATAAAGCAATGATTTTTACACAGATAGATTAAGAAGATTTTGTGTCCCTTTTTACCCACTTTTATATTGATGAGACCAGTCACTGAtttatataaaagtattttactgCCCATGGCCCCTTTTTCTTTGGAAAAGGGGATCTTTATTCCTTCAAAGAAATGAGGCTTTTAGCAAACCTCAATAAAAAAACCACtaatttattactttt

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0036372 opsin transport biological_process

KEGG:

id description
K16774 IQCB1, NPHP5; IQ calmodulin-binding motif-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673450.1 True 2557 mRNA 0.45 13 7861435 7873399
XM_022673452.1 False 2500 mRNA 0.45 14 7861435 7873399

Neighbor

gene id symbol gene type direction distance location
boll NA coding downstream 100451 7746874 ~ 7760984 (-)
kynu kynu,LOC107558516 coding downstream 125978 7706002 ~ 7735457 (-)
LOC103025511 LOC108441709,LOC108271601 coding downstream 163423 7643056 ~ 7698012 (-)
reck reck,LOC108441710,LOC106590283,LOC106579676,LOC107655684 coding downstream 225127 7557482 ~ 7636308 (-)
LOC103025816 NA coding downstream 311054 7535978 ~ 7550381 (-)
ccdc14 NA coding upstream 1527 7874926 ~ 7885865 (-)
LOC103027002 LOC108430032,LOC107705485,LOC107706665 coding upstream 212170 8085569 ~ 8115611 (-)
map3k2 map3k2,LOC107660022,LOC107677576,LOC107581346,LOC107584801 coding upstream 252147 8125546 ~ 8144999 (-)
LOC103026207 cyp27c1,LOC108430031,LOC108272716,LOC107677575,LOC107706664 coding upstream 276070 8149469 ~ 8158442 (-)
ercc3 ercc3 coding upstream 293530 8166929 ~ 8199090 (-)
G88923 NA non-coding downstream 218657 7598802 ~ 7642778 (-)
G88833 NA non-coding downstream 445950 7415058 ~ 7415485 (-)
G88824 NA non-coding downstream 479338 7325465 ~ 7382097 (-)
G88781 NA non-coding downstream 683821 7175374 ~ 7177614 (-)
G88780 NA non-coding downstream 712466 7131763 ~ 7148969 (-)
G89035 NA non-coding upstream 196005 8069404 ~ 8069620 (-)
G89029 NA non-coding upstream 202485 8075884 ~ 8079057 (-)
G89036 NA non-coding upstream 205665 8079064 ~ 8079780 (-)
G89038 NA non-coding upstream 207974 8081373 ~ 8081590 (-)
G89067 NA non-coding upstream 368951 8242350 ~ 8244544 (-)
G88789 NA other downstream 618865 7241711 ~ 7242570 (-)
LOC103026131 LOC108431006 other downstream 646196 7103571 ~ 7215239 (-)
G88779 NA other downstream 743309 7117661 ~ 7118126 (-)
vstm2a vstm2a other downstream 1128771 6676275 ~ 6732664 (-)
G88465 NA other downstream 3266110 4595058 ~ 4595325 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 1911224 9784623 ~ 9854099 (-)
G89690 zyx,LOC108428910 other upstream 2021426 9894825 ~ 9901700 (-)
G89708 gapdh,LOC107550818 other upstream 2087883 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 2138418 10011817 ~ 10042853 (-)
G89751 NA other upstream 2350121 10223520 ~ 10224663 (-)

Expression


Co-expression Network