reck (reck,LOC108441710,LOC106590283,LOC106579676,LOC107655684)


Basic Information

Item Value
gene id reck
gene name reck,LOC108441710,LOC106590283,LOC106579676,LOC107655684
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7557482 ~ 7636308 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233387.3
CTCTGCCCGCCCGGACCCCCTTCTCTCCTCAGTCTGCCACagccgcgcatgcgcagtgcgcTCGCTCCCTCAGCCCGGTGCGCTCCGCTGCTTTCCCCGTGTCCTGCCCGCGGcctgtgtgtggaggagaggCGGCGCAGCCCCGCGCTCATGCAGCCTGAGTTTCCCCCGGGGACGGTCGGTCTCATGGAGCGGGTCGGAGCCGCGCAGTCTCGTTTGGGTTTGGGTTCACCATGCGCCGCCGGACAGCACTAAGATGTGTGCGCGCTCTCAGATAGTCTTTTTGCTTCTCGCTTGCAACTTCTGCGCCTTGGTTTACGCTCAGGACCCCTCCTGCTGCCATCATGCTGCCGAGTTCCCTCAGTGTAGGGAAGCCTGCGATCAACTTGCAAAGATCAGAAGTGATTCCCATCTGAGGTTCCTTTACCAGCGTCTCTCAAGTTACTGTTCAGAGTCTATGACTGAGCTTTGGATCTGTATCAACTCTACGTTACCTGGAGCTTCAAGGAAGTCTTATGGATGGGTCGGGCTGGGCTGCTGTGAGCTGGCCATCTCAGCAGAGTGCCGCAGGGAATGCAAACAGGCATCTTCTAAGAACGATATcacaaaaatatgcaaaaaagaCACAGAGAAACCGCTCTACAGCTGTATCACCAAAAATGAAATGGGCTCAGTTTGCTGCAGCTATGCGGAGAAGCAAACGAACTGCCGCGAGTACTGCCAGGCCATCTTCCGCACGGACTCCTCACCCACCAGCTCCCAAATCAGTGCAGTCAAGCAGTACTGCCAGGGCACCAGCCCACAGCTCATTGGCTGTGTGGCTAACTACACCAAATCCTACCCAACCAGGAGTCCCATCGACAGTCTGTACTGTTGTGACCGTGCCGAGGAGGCGCACTGCCAGACAGCATGTAAACGCATCCTGCGCACCATGACCACGGAGCACGAGATCATGGAGGGTCTCATCAATGAGTGTGGCAGTCAGCCCCTCCCTCAGGACCCCCTGTGGCAGTGCTTCCTGGGTAGCGCTCACCCTCCTGCCAAAAGCGACCCAGAAACCGCGCCCACTGCCAAGATGGACTGCGCCAAGCTGCACTGCTGCTCCAAAGCTAATACCTCACTGTGCAGGAAAATGTGCCAAGAGATCAGCACCAACTGGGGCACTCAGACATGGCAGGAGTTTGACCAGCTGTGTGAGTACAACCCCGTGGAGACTGACCTCATTACCTGTCTGGCGGACGTGAGGGAACCGTGCCAGCTGGGCTGCAAGGATCTCACCTACTGCACAAATTTCAATAacagGCCCACAGAGCTCTTCCGGAGCTGCAACGTCCAGTCAGACCAGGGCGCCATGAATGACATCAAGCTGTGGTCTAATGGAACGATCCGGATGCCTGTGATGAACATTCCTGTTCTGGATATCAGAAAGTGTCAGCCTGAGATGTGGAAAGCTGTGGCCTgcgcactgcagatcaaacccTGCTACAGCAAATCAAGAGGCAGCGTCATCTGCAAGTCAGACTGTGTGGACATCCTGACGCACTGTGGGGACTTTACACGCTTCCCAGAAGGGCAGACCCCTGAGCGTATCTGTGATCTTCTGTCTCCTACTGATGACCCAGAGAGATGCATTCCTCTACACAGATACCTCACTCCGAGCCCCTTCGACAACATCATTGAGGAGGTGATCCACCCCTGTAACCCCAACCCGTGTCCCAGCAACCATCTGTGTGAAGTGAACAGGAAGGGCTGTCACGCAGGACAAGACTGCCTGCCATACTTCTGTGTGCCTGGCTGCAAACTGGGTGAGGCGTCGGAGTTCCTGGTGCATATGGAGGCGCGAATCCAAGTCCCTGTGCGCAGCGGTCAAGCAGGCTGTTACGAGGTGTGCACCTGCGGACAGAGTGGTCGTCTGGAGAACTGCGTTGAGATGCCTTGCATCGACACAACCCAGACCTGCGTCAGCGGAGaacagagaaaaaTTCATGGAGAATCTTTCAAGAAGGACTGTGACTCATGCTCCTGTTATGCTGGAGAGACAATCTGCTCTTCACGCAAGTGCCCCAGCCTAGAACACTCAGACGATGACCGCCACCTCTTCagagGCCTTCCATGTGGCTGCCCTGATCACTTTGTTCCAGTGTGTGCCCGGAATGGACGTACATACCCCAGTGCATGCGTGGCTCGCTGTGTGGGCTTCCAGGACAATCAGTTTGGGTATGGCTCCTGCAGGAGCTCAGAGCCCTGCTCCCCGAACCCCTGCCAGAAGAACCAGAGGTGCATCCCGAAGCGGCGAGTGTGTCTGACGGACATGACCGACTACCCGTGTCTGCAGTACGAGTGTGTGAACCGCCCTTCAGGCTGTGACCCGAACCAGCTGGATCCGGCCTGTGATACAGACAACCTGGAGCATGCTAACCTGTGCCTGCTCTACCAGCGGGGAAAGACCCTGGCCTACATGGGACACTGCCAGGATGCCTGCAGGGTGCGCCAAGAAGTGTGTGGACACAACGGTGAGACGTACAGCACGGTGTGTGAGGCGTTCTCAGACCGCGTGGCTGTGGATTATCATGGAGTGTGTCACGCTATGGGAGCAGTATCAGAGTTCATGACAGACTCCGGCTGTAATGCAGTGCCTTGCCCTCCTCTCTCCACACAGGGCTGCAACCCTGTCACCCCACCTGGTGCGTGCTGCCCCATCTGTGCTGGAATGCTGCAGATCCTCTGGAATAAAAAGCAGATGAACACCTTTGCCAAGttGAACCGGAATCAACCGATAACAGTACACAACATTCTGAGGATTCTTCGGCTGCATATTTCTGTTCCTCAGTGTGATATATTCGGCTACCTGAGCATCGACTCGGAAATCGTCATCCTCATCGTACCTGTCGACCAGCAGCCCACACCACTGCAgattgaagCCTGCAGCAAAGAGGCAGAGAAGATTGACTCTCTGATTAACTCGGGCAGCCCCACACTGGTCTCCCACGTGCCTCTGTCCGCCTTCCTCATGTCCGAGCTAAAGCTGTCCACCGTCAGCTCGGCTGCTCCTCCCAGCGcctcctcgctctctctcctcctcctctgtctcCTCCTCTCCATACTCATCCTGCCCTTCACAGGGAGGACCCCGTGAAACGCCTAGACACAAGTGCCACGCCGCCACGCTCCTTAACGTCTGTTGCCCAGCAACAGGACATCACCGGTGTCCTCTGAACTTCTGTGGGCAAATCATTGTGTTACTGGAAGCGGCTCTGGTCCGCAGTGCCTCGACaatcaaaaagagaaaaaagaaaaaaaacgcaAAGCAGATGAGAACAATCATTGTAAGTGTGATaaaagagcagcagcagagttcAGCAGAGACTGACGAGGAATCATTCATAAACTCATTAATATATCGCAGgctgttttattgaacacagcattgctttattttaaatgatataaTGCTAAGCTGCGTTTGAATTATCATGCTAATTCCTTTTATTTCACAGCACAGCATCATTTACAGTATGTGCAGATCTGAGCATCTGCTGGAAACAGTGAAAGATGGAAGCAGTGGAgtgaccaatcagagcagacTTCAGGCTATAGTATAGCTCTGCTCAGTTCCATTTTCCACTTCCATGGACTTCCACACACTCCtctactctgtgtttaatatcaGAGTCTTATACATTTCATATCAGAAATACGACAAcatcattaaaatagcactCAATGGAAGCAGTAGATAAAGCTAAGGCTCCACCCCCTAGCTAAAAAAACTCAGATTTATAAGGGATCAAATTATAGGgatcgctctctttctctctctctatctatctctttgtTCCTCCCTGtagataatgtaataaaaacctAATCAGAGGAAGGAGGAACTTACAGCCATGCTAATGAATATGACAATCAAATCGCTTACCCACAAGTGGGTAATCACAACCGTATGCCTTgcttatacagtttatatatatatatatatataaatataaatatatgtaaagatttttttttatatgaagcATTGCAGAAACTAAAAAATGATGTTGATAAAAAATGATGTTTTATTtagctaaatgttttatttgaaattgtTTAATCTGATCCGAAGATCAGAATCACAAtgtgccatttaaaaaaaaaaatcttattcttGCATGATGACAATTATGAAGTGTTTTTACAGAAAGCTTTGTATTACGTGTTCTGTCTGCGTGCCTACATGTCGTCTCTCTGCCTACGTCACACGAAGGGtctctggtgtttttttaacagtattatCGTGCGTAGGCAGCTTTTTGTAGCATTCCCAACCAATGGAGCTTTGTGCTGTCCTGtgtgtctgtttctgtgtttccaACTCAACCgatgtgtatttttataagataataataaaagtgttcATATTGCCAAATTACAGCTTGTGCCAATTCCATATTAAAcccaacatataatatgaa

Function

symbol description
reck Predicted to enable coreceptor activity involved in canonical Wnt signaling pathway and metalloendopeptidase inhibitor activity. Acts upstream of or within several processes, including dorsal root ganglion development; regulation of cell migration involved in sprouting angiogenesis; and sprouting angiogenesis. Located in plasma membrane. Is expressed in trunk and vasculature. Orthologous to human RECK (reversion inducing cysteine rich protein with kazal motifs).

NR:

description
PREDICTED: reversion-inducing cysteine-rich protein with Kazal motifs

GO: NA

KEGG:

id description
K17461 RECK, ST15; reversion-inducing-cysteine-rich protein with kazal motifs

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233387.3 True 4463 mRNA 0.51 21 7557482 7636308

Neighbor

gene id symbol gene type direction distance location
LOC103025816 NA coding downstream 7101 7535978 ~ 7550381 (-)
LOC103034175 tgfbr1,tgfbr1b,LOC108441711,LOC107757190,LOC105890151,LOC106590284 coding downstream 42894 7429999 ~ 7514588 (-)
lancl2 lancl2 coding downstream 158899 7336728 ~ 7398583 (-)
LOC103026452 NA coding downstream 456023 7099238 ~ 7101459 (-)
LOC103045308 LOC108431216,LOC108271758 coding downstream 1150460 6277116 ~ 6407022 (-)
LOC103025511 LOC108441709,LOC108271601 coding upstream 6748 7643056 ~ 7698012 (-)
kynu kynu,LOC107558516 coding upstream 69694 7706002 ~ 7735457 (-)
boll NA coding upstream 110566 7746874 ~ 7760984 (-)
iqcb1 NA coding upstream 225127 7861435 ~ 7873399 (-)
ccdc14 NA coding upstream 238618 7874926 ~ 7885865 (-)
G88833 NA non-coding downstream 141997 7415058 ~ 7415485 (-)
G88824 NA non-coding downstream 175385 7325465 ~ 7382097 (-)
G88781 NA non-coding downstream 379868 7175374 ~ 7177614 (-)
G88780 NA non-coding downstream 408513 7131763 ~ 7148969 (-)
G88749 NA non-coding downstream 516891 7040248 ~ 7040591 (-)
G89035 NA non-coding upstream 433096 8069404 ~ 8069620 (-)
G89029 NA non-coding upstream 439576 8075884 ~ 8079057 (-)
G89036 NA non-coding upstream 442756 8079064 ~ 8079780 (-)
G89038 NA non-coding upstream 445065 8081373 ~ 8081590 (-)
G89067 NA non-coding upstream 606042 8242350 ~ 8244544 (-)
G88789 NA other downstream 314912 7241711 ~ 7242570 (-)
LOC103026131 LOC108431006 other downstream 342243 7103571 ~ 7215239 (-)
G88779 NA other downstream 439356 7117661 ~ 7118126 (-)
vstm2a vstm2a other downstream 824818 6676275 ~ 6732664 (-)
G88465 NA other downstream 2962157 4595058 ~ 4595325 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 2148315 9784623 ~ 9854099 (-)
G89690 zyx,LOC108428910 other upstream 2258517 9894825 ~ 9901700 (-)
G89708 gapdh,LOC107550818 other upstream 2324974 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 2375509 10011817 ~ 10042853 (-)
G89751 NA other upstream 2587212 10223520 ~ 10224663 (-)

Expression


Co-expression Network