LOC103025816


Basic Information

Item Value
gene id LOC103025816
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7535978 ~ 7550381 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233444.3
ATACCGCTCACACTGCCATGATGACGACCCTACGCCTTCTGCTCCTTTCCttcatcattattatttcaGATGCTGACAAAATCACCACAATCAAGGAAGTTTCTGTACGAGAAGGACAGTCCATTATAATTCCTTGTTTATATGATCCAATATATGAGtcccatttaaaatacttatgttCTGGATATATGTGGGCGTTCTGTAAACCTAAGGTGTACTCTAAACCTCAAGAAACAAACAGCAAAATGTCCATCACAGATGACAGAGAGCGGAGAACCATCAATGTGACTATGAACGCCCTATCCAGTTCTGAAGCTGGTCATTACTGGTGTTGTATTGAAATAGACAAAGCGTCTGATGAAGGAAGTTGGTTTAAGTTACAGGTCACAAAAGATCCTGAACTTTACGTGGAGAATCAGACGGTAACTGGTGACGTGGGCCAGACTGTGTCAATTGTCTgccatcatcctcatcatcacaGTTCGAATGAAGAAATGAAGTGGTGTAAGCTTGACGGGAACTGCGTGAAGAACACAGGAACCTTAGATAGAGCTTCAGTTCAACtcataaaaacagataaattcCTCAAGATTGAAATGAGTAACCTGATGATGAAGCACACTGGATGGTACTACTGTTCGGTGGGACATTTACAGATGCCTGTTCATGTGTCTGTGACAAACATCTCAAAGACCTTAAGACTAAGGACCATGAAACAAGCACCCAACAATCCAGCACCCAACAATACAGCACCCAACAATACAGCACCCAACAACACAGCAGCCTCTGGCAGCCCCTTAATCCCTAATGGAAACCTGTTTGTGTTGACTGTATGTTTGGGAGTGATGGTTCCATTCGTCTGTGCTGCAGTGACTCTGATAATGCTGCTGAAAAAAAaaAACAAACGGAAATCATTTAAAGGGCATGACCATGCTGAAAATATTTATGTCAGCATGCGCCTTAAACCACAGTCAGAAAAGCCAAAacaatgtgaagaaaaaaagggTGAAGAAGACGAAACCTATGTAACGATGTCAGGAGTGCAGAAATCCCTACAGGTGGGATCTTGATTTGGCCTCTGTGCTGCACTTTTCTGCCTGGCCAGATGGAGGCAGCGTAACAAATGGAGTACAGGCTGTTCTGACCCTCCTGCACCAGCTGAGTGGACTTCACATTTGCCTTTGTCTTATTAGAcgactaaactaaacaaatgttaaaaaaattcaaTGGCTTCTTTTAATACATTGTATGACGTTTTAGTTGTTGATTTAGTTTGGATTGCTCTTTTGCAGTGTATGCTGTAGACTGCTTATATTAACAATGCTTTCCAACTTCAATTTCAATATCTGCATGTACAGCTCCggaaacaaattaagagaccacttcaaaatgattgTTTTCTTAAGTATCATGATGATTTGTAACCCTGTCATGGCCAGCCCTATCTCCAAACCCAAATTAAAATCTCTGGAATCTgaaaccaggagtggcataaggtcacccaaaagcagtgtgtaagactggtggaggagaacatgccaagacgcattaAAGCCATGaataaaatcagggttattgagccaaatactgatttttgaactcttccTTAATAGTATTGTTATCCTGTTCATAAATACTGTTTAGaaatataattacatgaattatatgaattct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233444.3 True 1674 mRNA 0.40 7 7535978 7550381

Neighbor

gene id symbol gene type direction distance location
LOC103034175 tgfbr1,tgfbr1b,LOC108441711,LOC107757190,LOC105890151,LOC106590284 coding downstream 21390 7429999 ~ 7514588 (-)
lancl2 lancl2 coding downstream 137395 7336728 ~ 7398583 (-)
LOC103026452 NA coding downstream 434519 7099238 ~ 7101459 (-)
LOC103045308 LOC108431216,LOC108271758 coding downstream 1128956 6277116 ~ 6407022 (-)
stk17a stk17a coding downstream 1260668 6227605 ~ 6275310 (-)
reck reck,LOC108441710,LOC106590283,LOC106579676,LOC107655684 coding upstream 7101 7557482 ~ 7636308 (-)
LOC103025511 LOC108441709,LOC108271601 coding upstream 92675 7643056 ~ 7698012 (-)
kynu kynu,LOC107558516 coding upstream 155621 7706002 ~ 7735457 (-)
boll NA coding upstream 196493 7746874 ~ 7760984 (-)
iqcb1 NA coding upstream 311054 7861435 ~ 7873399 (-)
G88833 NA non-coding downstream 120493 7415058 ~ 7415485 (-)
G88824 NA non-coding downstream 153881 7325465 ~ 7382097 (-)
G88781 NA non-coding downstream 358364 7175374 ~ 7177614 (-)
G88780 NA non-coding downstream 387009 7131763 ~ 7148969 (-)
G88749 NA non-coding downstream 495387 7040248 ~ 7040591 (-)
G88923 NA non-coding upstream 48421 7598802 ~ 7642778 (-)
G89035 NA non-coding upstream 519023 8069404 ~ 8069620 (-)
G89029 NA non-coding upstream 525503 8075884 ~ 8079057 (-)
G89036 NA non-coding upstream 528683 8079064 ~ 8079780 (-)
G89038 NA non-coding upstream 530992 8081373 ~ 8081590 (-)
G88789 NA other downstream 293408 7241711 ~ 7242570 (-)
LOC103026131 LOC108431006 other downstream 320739 7103571 ~ 7215239 (-)
G88779 NA other downstream 417852 7117661 ~ 7118126 (-)
vstm2a vstm2a other downstream 803314 6676275 ~ 6732664 (-)
G88465 NA other downstream 2940653 4595058 ~ 4595325 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 2234242 9784623 ~ 9854099 (-)
G89690 zyx,LOC108428910 other upstream 2344444 9894825 ~ 9901700 (-)
G89708 gapdh,LOC107550818 other upstream 2410901 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 2461436 10011817 ~ 10042853 (-)
G89751 NA other upstream 2673139 10223520 ~ 10224663 (-)

Expression


Co-expression Network