LOC103035109


Basic Information

Item Value
gene id LOC103035109
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 9588054 ~ 9601264 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249823.3
ACACTTCTCCCTACTATGAGTGTCTAGGGGAAGTGAGGAgggtgtagtgtgtatgtgtaagtggAACTGAAGCCCATCTGCTCCCTCTACAGGAAGTAGTAGTAACCTCAGGCACTGATGTCATTCAGCCCGGCTCTGAAAGTCGTATGATGCAGCCGCAGCGCTTCCGTCGCTTATGTTATGTTTAAATAGTGTACGCAAACACTTCAGACACTGGAGTAACGCAGAGAGCATTGGAGTGAGTCTATGGCACGTGGTGCATGTGTTTGAACAGGCCACAGTGTTTATATGTAGTGAGTAGCTACCTGTATGTATGAGCTTAGCCGGCTAGTTATCTCGGGTTCAGCGGGTTCAGCATCATCCGATCCAGATGAGTGTGTGGGGCTCCTAGCGCGTTCAGAGTTCCTGTAGTGTTAGTTAgttcagtgtgtcagtgtgtaataaactgagctttattcatcatgatgatgatgagagcTGGTTTACACGCAGTTAGAGCATTTCCTAGCTTTAGCCGCTCGCCTTCCGGTCACAGCGTTTCAGGCGTTTTACAGATTCAGGGATTTGGAACACAGTGGAAATCTCCCTCAGCCTTCCAGAGCCTTCGTCCATTCTCGAAAGTGTCCCTATGGCCATTTAACACCCAGCCCAAAGACTTCAGTGAGCCCAACGACTCATGGAGTCCAGAGATGCGAAAGATGTATGATAAGTATTTCGCACTGTGTGAAGTCGAGGctgaaggaggagagagagagactgaggggGGCGAGAAGAAGAGGGCTCCATGGCGGAAACTGCCCAGCTATAATCGTGCTCTGAAACATGCCACAGGGGGAGTGTACCttagtaaagtgatccagaccaAAGCTCGACTCTTCACAAGGAATATAGAGGAGGAGGGGGCAGCTTTTGAGTATGTAGTTTTCATGAACAAGCAGgagaagaggtgtgtgtgtatatttcagAGTGGACATCTACTGGAAGGACCACCTGGGCATGTACATGGAGGAGCAATTGCCACCATGATGGATTCTGTGACAGGCACTATGACTGGTTACCTGTCTGGGCCTGTTGTGACTGCCAATCTCAACATCAACTATCGCAGCCCGATTCCACTGGGTGCTGTAGTCCTGATTCACAGTGCTTTGGATCGTGTAGAGGGCAGAAAAACCTTTGCAACCTGTAAGGTGACCAGCATCGATGAATCCAAACTGCACACAGAAGCTACAGTGTTATTTTTATCAGTTAAGTTGGGCAGCTTTTTTGGAGCTTGAGGTGTATAAGCAGGTACATACCCATTGTAGGCATGTGCATGCCtgggtatatgtgtgtgtgtgtgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>XM_015605895.2
atatttaaaattttgaatctaatttatatattttcagatttaaaaaatatcagatccttaaattttcagatttaaaaattCAGATTCGTAAATTTTCAGATTTAGAAATTTAGATTTGTACATTTTCAGATTAAAAAATTCAGATCTCTAAATGTTGtgtattaattaaacattaattaaacatgCCTGTCCACTTGAGCTGGAGGAAatgtatctagctagctagtttagctagatAACGCTAGAGAGCTAGTTACCACAGAGGGGGATTGaaagttttagattatttaatttgtctttttgtAACTTATCTCATGTCTAATTTGTTATAAAACACTTCTGATACTACAGTGACACACTACAGTTAggatttatgtatatttttgatagatagatagaataacTTTTACTTTAAGCCAGCTTAAAGTACTTTAACTTTAGCCAGCTAGttcattagctaacctagctccTAGCGTTCAGTAGTGTAGGTTAgttcagtgtgtcagtgtgtaataaactgagctttattCATCATGATTATGATGAGACTCGGTTTACAGGCACAGAGAGTGTTTCATAGCTTTAGCCGCTCGCTCTCCGGTCACAGCGTTTCAGGCGTTTTACAGATTCAGGGATTTGGAGCACTATGGAAATCTCCCTCAGCCTTCCAGAGCCTTCGTCCATTCTCGAAGATGTCACTGTGGCCTTCCAATATTCATCTGCAAGACTACAGTGAGCCCAATGAATCATGGAGCCCAGAGATGCGACAACTGTATGATCAGTATATTGCACTCTGTGAAGTGAGGACTGATGGAGGCGAGGTGAAGACGGGACCTTGGCAGAAGCTGCCCAGCTACAACCGTACTCTCAAACATGGCATAGTAGCAGCACAGCGTCCTAAAACAATCGACCCAAGAGCTCGTCTCTTCACAAGGAATGTAGAGGAGAAGGGGGCAGCGTTTGAGTATGTGGTTTTTATGAATGATCAggagaggaggtgtgtgtgtgtatttcagaGTGGACATCTACTGGAGGGACCACCTGGGTATGTGCATGCAGGAGCAGTAGCCACAATGTTTAGTACTGTGACGACCACTCTCTCTATGCTATTTGGGAGAGTTTTGACTGCCAATCTGAACCTCAACTTTCGCAGCCCAGTACCTCTAGGTAGCGTCAGCCTTATTCATAGTGCTGTGGATAAAGTGGAGGGGAGAAAGATCTTCGTAACCTGTAGGATGACCAGCATCGATGAATCTAAACTATACACAGATGCTACAGCGTTATTTTTGTCTGGTAAATTGGGCCATGTATTTGGGACAAAAAGTGTATAGCAGGCCAGACACTAATGTAGATGTGTGCACACCTGGGTGTGTGCCTGTGCGAAATGACCAGCTAGTGGTGCAAATATTTTACCACTACCAGCTGTCACAACCACACAGGACTTCCTGTGAAGTGCAGTGTTTAAACTTTCTCCAgaacaatttattttaaatattttatttgtagtatttttttaaaccaaatgaCTATTCGCTCATAAATTATATCACATTTATTTGgttctatttttattaaaattaattcttACATCTGTAGATACAGTACTCTGCAAAAGTCTTAGTCGTTCTTGAATGAAATTTGtgctaaattaaaaatgtgtatttaggCAGCATGCGTGTAGTGCCTcgaaaaataatacattactttACAATACATACACGTATACTAAAAAACAGGTTGTATTCTATTATAGAAGAATATAGTTAAAAGAACACAGGTTTtgtagctgtaaaaaaaaaatctgtcgaCATAAAttagtatattactgtatattactttCTCACGTGGACTAAGACACTTgacagtactgtatgtatttttttgaatGCTGCAATGGcttgttttgtaattttaggAACCATATTTCTCTTAATCTA
>XM_022673487.1
CACACTTCTCCCTACTATGAGTGTCTAGGGGAAGTGAGGAgggtgtagtgtgtatgtgtaagtggAACTGAAGCCCATCTGCTCCCTCTACAGGAAGTAGTAGTAACCTCAGGCACTGATGTCATTCAGCCCGGCTCTGAAAGTCGTATGATGCAGCCGCAGCGCTTCCGTCGCTTATGTTATGTTTAAATAGTGTACGCAAACACTTCAGACACTGGAGTAACGCAGAGAGCATTGGAGTGAGTCTATGGCACGTGGTGCATGTGTTTGAACAGGCCACAGTGTTTATATGTAGTGAGTAGCTACCTGTATGTATGAGCTTAGCCGGCTAGTTATCTCGGGTTCAGCGGGTTCAGCATCATCCGATCCAGATGAGTGTGTGGGGCTCCTAGCGCGTTCAGAGTTCCTGTAGTGTTAGTTAgttcagtgtgtcagtgtgtaataaactgagctttattcatcatgatgatgatgagagcTGGTTTACACGCAGTTAGAGCATTTCCTAGCTTTAGCCGCTCGCCTTCCGGTCACAGCGTTTCAGGCGTTTTACAGATTCAGGGATTTGGAACACAGTGGAAATCTCCCTCAGCCTTCCAGAGCCTTCGTCCATTCTCGAAAGTGTCCCTATGGCCATTTAACACCCAGCCCAAAGACTTCAGTGAGCCCAACGACTCATGGAGTCCAGAGATGCGAAAGATGTATGATAAGTATTTCGCACTGTGTGAAGTCGAGGctgaaggaggagagagagagactgaggggGGCGAGAAGAAGAGGGCTCCATGGCGGAAACTGCCCAGCTATAATCGTGCTCTGAAACATGCCACAGGGGGAGTGTACCttagtaaagtgatccagaccaAAGCTCGACTCTTCACAAGGAATATAGAGGAGGAGGGGGCAGCTTTTGAGTATGTAGTTTTCATGAACAAGCAGgagaagaggtgtgtgtgtatatttcagAGTGGACATCTACTGGAAGGACCACCTGGGCATGTACATGGAGGAGCAATTGCCACCATGATGGATTCTGTGACAGGCACTATGACTGGTTACCTGTCTGGGCCTGTTGTGACTGCCAATCTCAACATCAACTATCGCAGCCCGATTCCACTGGGTGCTGTAGTCCTGATTCACAGTGCTTTGGATCGTGTAGAGGGCAGAAAAACCTTTGCAACCTGTAAGGTGACCAGCATCGATGAATCCAAACTGCACACAGAAGCTACAGAAGATGTCACTGTGGCCTTCCAATATTCATCTGCAAGACTACAGTGAGCCCAATGAATCATGGAGCCCAGAGATGCGACAACTGTATGATCAGTATATTGCACTCTGTGAAGTGAGGACTGATGGAGGCGAGGTGAAGA
>XM_022673488.1
ACACTTCTCCCTACTATGAGTGTCTAGGGGAAGTGAGGAgggtgtagtgtgtatgtgtaagtggAACTGAAGCCCATCTGCTCCCTCTACAGGAAGTAGTAGTAACCTCAGGCACTGATGTCATTCAGCCCGGCTCTGAAAGTCGTATGATGCAGCCGCAGCGCTTCCGTCGCTTATGTTATGTTTAAATAGTGTACGCAAACACTTCAGACACTGGAGTAACGCAGAGAGCATTGGAGTGAGTCTATGGCACGTGGTGCATGTGTTTGAACAGGCCACAGTGTTTATATGTAGTGAGTAGCTACCTGTATGTATGAGCTTAGCCGGCTAGTTATCTCGGGTTCAGCGGGTTCAGCATCATCCGATCCAGATGAGTGTGTGGGGCTCCTAGCGCGTTCAGAGTTCCTGTAGTGTTAGTTAgttcagtgtgtcagtgtgtaataaactgagctttattcatcatgatgatgatgagagcTGGTTTACACGCAGTTAGAGCATTTCCTAGCTTTAGCCGCTCGCCTTCCGGTCACAGCGTTTCAGGCGTTTTACAGATTCAGGGATTTGGAACACAGTGGAAATCTCCCTCAGCCTTCCAGAGCCTTCGTCCATTCTCGAAAGTGTCCCTATGGCCATTTAACACCCAGCCCAAAGACTTCAGTGAGCCCAACGACTCATGGAGTCCAGAGATGCGAAAGATGTATGATAAGTATTTCGCACTGTGTGAAGTCGAGGctgaaggaggagagagagagactgaggggGGCGAGAAGAAGAGGGCTCCATGGCGGAAACTGCCCAGCTATAATCGTGCTCTGAAACATGCCACAGGGGGAGTGTACCttagtaaagtgatccagaccaAAGCTCGACTCTTCACAAGGAATATAGAGGAGGAGGGGGCAGCTTTTGAGTATGTAGTTTTCATGAACAAGCAGgagaagaggtgtgtgtgtatatttcagAGTGGACATCTACTGGAAGGACCACCTGGGCATGTACATGGAGGAGCAATTGCCACCATGATGGATTCTGTGACAGGCACTATGACTGGTTACCTGTCTGGGCCTGTTGTGACTGCCAATCTCAACATCAACTATCGCAGCCCGATTCCACTGGGTGCTGTAGTCCTGATTCACAGTGCTTTGGATCGTGTAGAGGGCAGAAAAACCTTTGCAACCTGTAAGGTGACCAGCATCGATGAATCCAAACTGCACACAGAAGCTACAGTGTTATTTTTATCAGTTAAGTTGGGCAGCTTTTTTGGAGCTTGAGGTGTATAAGCAGAAGATGTCACTGTGGCCTTCCAATATTCATCTGCAAGACTACAGTGAGCCCAATGAATCA
>XM_022673490.1
ACATCAGAtccatatatttaaaattttgaatctaatttatatattttcagatttaaaaaatatcagatccttaaattttcagatttaaaaattCAGATTCGTAAATTTTCAGATTTAGAAATTTAGATTTGTACATTTTCAGATTAAAAAATTCAGATCTCTAAATGTTGtgtattaattaaacattaattaaacatgCCTGTCCACTTGAGCTGGAGGAAatgtatctagctagctagtttagctagatAACGCTAGAGAGCTAGTTACCACAGAGGGGGATTGaaagttttagattatttaatttgtctttttgtAACTTATCTCATGTCTAATTTGTTATAAAACACTTCTGATACTACAGTGACACACTACAGTTAggatttatgtatatttttgatagatagatagaataacTTTTACTTTAAGCCAGCTTAAAGTACTTTAACTTTAGCCAGCTAGttcattagctaacctagctccTAGCGTTCAGTAGTGTAGGTTAgttcagtgtgtcagtgtgtaataaactgagctttattCATCATGATTATGATGAGACTCGGTTTACAGGCACAGAGAGTGTTTCATAGCTTTAGCCGCTCGCTCTCCGGTCACAGCGTTTCAGGCGTTTTACAGATTCAGGGATTTGGAGCACTATGGAAATCTCCCTCAGCCTTCCAGAGCCTTCGTCCATTCTCGATGTCACTGTGGCCTTCCAATATTCATCTGCAAGACTACAGTGAGCCCAATGAATCATGGAGCCCAGAGATGCGACAACTGTATGATCAGTATATTGCACTCTGTGAAGTGAGGACTGATGGAGGCGAGGTGAAGACGGGACCTTGGCAGAAGCTGCCCAGCTACAACCGTACTCTCAAACATGGCATAGTAGCAGCACAGCGTCCTAAAACAATCGACCCAAGAGCTCGTCTCTTCACAAGGAATGTAGAGGAGAAGGGGGCAGCGTTTGAGTATGTGGTTTTTATGAATGATCAggagaggaggtgtgtgtgtgtatttcagaGTGGACATCTACTGGAGGGACCACCTGGGTATGTGCATGCAGGAGCAGTAGCCACAATGTTTAGTACTGTGACGACCACTCTCTCTATGCTATTTGGGAGAGTTTTGACTGCCAATCTGAACCTCAACTTTCGCAGCCCAGTACCTCTAGGTAGCGTCAGCCTTATTCATAGTGCTGTGGATAAAGTGGAGGGGAGAAAGATCTTCGTAACCTGTAGGATGACCAGCATCGATGAATCTAAACTATACACAGATGCTACAGCGTTATTTTTGTCTGGTAAATTGGGCCATGTATTTGGGACAAAAAGTGTATAGCAGGCCAGACACTAATGTAGATGTGTGCACACCTGGGTGTGTGCCTGTGCGAAATGACCAGCTAGTGGTGCAAATATTTTACCACTACCAGCTGTCACAACCACACAGGACTTCCTGTGAAGTGCAGTGTTTAAACTTTCTCCAgaacaatttattttaaatattttatttgtagtatttttttaaaccaaatgaCTATTCGCTCATAAATTATATCACATTTATTTGgttctatttttattaaaattaattcttACATCTGTAGATACAGTACTCTGCAAAAGTCTTAGTCGTTCTTGAATGAAATTTGtgctaaattaaaaatgtgtatttaggCAGCATGCGTGTAGTGCCTcgaaaaataatacattactttACAATACATACACGTATACTAAAAAACAGGTTGTATTCTATTATAGAAGAATATAGTTAAAAGAACACAGGTTTtgtagctgtaaaaaaaaaatctgtcgaCATAAAttagtatattactgtatattactttCTCACGTGGACTAAGACACTTgacagtactgtatgtatttttttgaatGCTGCAATGGcttgttttgtaattttaggAACCATATTTCTCTTAATCTA

Function

GO: NA

KEGG:

id description
K16339 THEM4, CTMP; acyl-coenzyme A thioesterase THEM4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249823.3 False 1371 mRNA 0.48 6 9596404 9601263
XM_015605895.2 False 1937 mRNA 0.37 6 9588054 9593359
XM_022673487.1 False 1370 mRNA 0.49 6 9591707 9601264
XM_022673488.1 False 1347 mRNA 0.48 7 9591786 9601263
XM_022673490.1 True 1947 mRNA 0.37 6 9588054 9593372

Neighbor

gene id symbol gene type direction distance location
LOC103035430 LOC108429015,LOC108273951,LOC107741974,LOC107596682,LOC107684164,LOC107656700 coding downstream 5911 9544171 ~ 9582143 (-)
ecm1 NA coding downstream 48681 9531182 ~ 9539373 (-)
LOC103044521 LOC108429011,LOC108268485,LOC107684166,LOC107596688 coding downstream 58151 9506442 ~ 9529903 (-)
LOC103044039 zgc:92912,vamp1,LOC103044039,LOC108268517,LOC108429010,LOC106529171 coding downstream 91085 9489566 ~ 9496969 (-)
LOC103040854 LOC103040854 coding downstream 388095 9198386 ~ 9199959 (-)
LOC103033935 NA coding upstream 19528 9620792 ~ 9627079 (-)
LOC103032975 NA coding upstream 66457 9667721 ~ 9681516 (-)
LOC103031716 LOC107748790,LOC107685510,LOC107596678 coding upstream 83965 9685229 ~ 9703502 (-)
gtf3c6 gtf3c6 coding upstream 318458 9919722 ~ 9921779 (-)
LOC103024539 NA coding upstream 470371 10071635 ~ 10076554 (-)
G89531 NA non-coding downstream 83878 9503965 ~ 9504176 (-)
G89511 ncald,ncalda,LOC103042493,LOC106594940,LOC106931336,LOC108268956,LOC100692199,LOC105901278 non-coding downstream 134513 9407838 ~ 9453541 (-)
G89410 NA non-coding downstream 210056 9377489 ~ 9377998 (-)
G89405 NA non-coding downstream 228781 9353736 ~ 9359273 (-)
G89400 NA non-coding downstream 243687 9344151 ~ 9344367 (-)
G89549 NA non-coding upstream 2363 9603627 ~ 9608648 (-)
G89543 NA non-coding upstream 31312 9632576 ~ 9634126 (-)
G89561 LOC108429016,LOC108268427,LOC107748717,LOC107596738,LOC106576890 non-coding upstream 53219 9654483 ~ 9656503 (-)
G89580 NA non-coding upstream 120720 9721984 ~ 9735423 (-)
G89689 NA non-coding upstream 267699 9868963 ~ 9890217 (-)
G88789 NA other downstream 2345484 7241711 ~ 7242570 (-)
LOC103026131 LOC108431006 other downstream 2372815 7103571 ~ 7215239 (-)
G88779 NA other downstream 2469928 7117661 ~ 7118126 (-)
vstm2a vstm2a other downstream 2855390 6676275 ~ 6732664 (-)
G88465 NA other downstream 4992729 4595058 ~ 4595325 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 183359 9784623 ~ 9854099 (-)
G89690 zyx,LOC108428910 other upstream 293561 9894825 ~ 9901700 (-)
G89708 gapdh,LOC107550818 other upstream 360018 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 410553 10011817 ~ 10042853 (-)
G89751 NA other upstream 622256 10223520 ~ 10224663 (-)

Expression


Co-expression Network