RNA id: XM_007249823.3


Basic Information

Item Value
RNA id XM_007249823.3
length 1371
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC103035109
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 9588054 ~ 9601264 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACACTTCTCCCTACTATGAGTGTCTAGGGGAAGTGAGGAgggtgtagtgtgtatgtgtaagtggAACTGAAGCCCATCTGCTCCCTCTACAGGAAGTAGTAGTAACCTCAGGCACTGATGTCATTCAGCCCGGCTCTGAAAGTCGTATGATGCAGCCGCAGCGCTTCCGTCGCTTATGTTATGTTTAAATAGTGTACGCAAACACTTCAGACACTGGAGTAACGCAGAGAGCATTGGAGTGAGTCTATGGCACGTGGTGCATGTGTTTGAACAGGCCACAGTGTTTATATGTAGTGAGTAGCTACCTGTATGTATGAGCTTAGCCGGCTAGTTATCTCGGGTTCAGCGGGTTCAGCATCATCCGATCCAGATGAGTGTGTGGGGCTCCTAGCGCGTTCAGAGTTCCTGTAGTGTTAGTTAgttcagtgtgtcagtgtgtaataaactgagctttattcatcatgatgatgatgagagcTGGTTTACACGCAGTTAGAGCATTTCCTAGCTTTAGCCGCTCGCCTTCCGGTCACAGCGTTTCAGGCGTTTTACAGATTCAGGGATTTGGAACACAGTGGAAATCTCCCTCAGCCTTCCAGAGCCTTCGTCCATTCTCGAAAGTGTCCCTATGGCCATTTAACACCCAGCCCAAAGACTTCAGTGAGCCCAACGACTCATGGAGTCCAGAGATGCGAAAGATGTATGATAAGTATTTCGCACTGTGTGAAGTCGAGGctgaaggaggagagagagagactgaggggGGCGAGAAGAAGAGGGCTCCATGGCGGAAACTGCCCAGCTATAATCGTGCTCTGAAACATGCCACAGGGGGAGTGTACCttagtaaagtgatccagaccaAAGCTCGACTCTTCACAAGGAATATAGAGGAGGAGGGGGCAGCTTTTGAGTATGTAGTTTTCATGAACAAGCAGgagaagaggtgtgtgtgtatatttcagAGTGGACATCTACTGGAAGGACCACCTGGGCATGTACATGGAGGAGCAATTGCCACCATGATGGATTCTGTGACAGGCACTATGACTGGTTACCTGTCTGGGCCTGTTGTGACTGCCAATCTCAACATCAACTATCGCAGCCCGATTCCACTGGGTGCTGTAGTCCTGATTCACAGTGCTTTGGATCGTGTAGAGGGCAGAAAAACCTTTGCAACCTGTAAGGTGACCAGCATCGATGAATCCAAACTGCACACAGAAGCTACAGTGTTATTTTTATCAGTTAAGTTGGGCAGCTTTTTTGGAGCTTGAGGTGTATAAGCAGGTACATACCCATTGTAGGCATGTGCATGCCtgggtatatgtgtgtgtgtgtgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120432 lncRNA downstream 142 9594119 ~ 9596262 (-) True G89536
TU120433 lncRNA downstream 142 9594297 ~ 9596262 (-) False G89536
TU120416 lncRNA downstream 92228 9503965 ~ 9504176 (-) True G89531
TU120389 lncRNA downstream 142863 9445167 ~ 9453541 (-) True G89511
TU120388 lncRNA downstream 150527 9407838 ~ 9445877 (-) False G89511
TU120448 lncRNA upstream 2364 9603627 ~ 9608648 (-) True G89549
TU120449 lncRNA upstream 2364 9603627 ~ 9608648 (-) False G89549
TU120450 lncRNA upstream 2364 9603627 ~ 9608648 (-) False G89549
TU120440 lncRNA upstream 31313 9632576 ~ 9634126 (-) True G89543
TU120464 lncRNA upstream 53220 9654483 ~ 9656503 (-) True G89561
XM_022673490.1 mRNA downstream 3032 9588054 ~ 9593372 (-) True LOC103035109
XM_015605895.2 mRNA downstream 3045 9588054 ~ 9593359 (-) False LOC103035109
XM_007249824.3 mRNA downstream 14261 9544171 ~ 9582143 (-) True LOC103035430
XM_007249825.3 mRNA downstream 14273 9544171 ~ 9582131 (-) False LOC103035430
XM_022673486.1 mRNA downstream 30843 9544171 ~ 9565561 (-) False LOC103035430
XM_015605945.2 mRNA upstream 19529 9620792 ~ 9627079 (-) True LOC103033935
XM_022673353.1 mRNA upstream 66458 9667721 ~ 9681516 (-) True LOC103032975
XM_007249812.3 mRNA upstream 83966 9685229 ~ 9703502 (-) True LOC103031716
XM_007249814.3 mRNA upstream 83966 9685229 ~ 9703496 (-) False LOC103031716
XM_007249813.2 mRNA upstream 83966 9685229 ~ 9701152 (-) False LOC103031716
TU119448 other downstream 2353834 7241711 ~ 7242570 (-) True G88789
TU119427 other downstream 2478278 7117661 ~ 7118126 (-) True G88779
TU119041 other downstream 5001079 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 5030200 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 5904940 3606470 ~ 3691464 (-) False lyrm4
TU120441 other upstream 201508 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 293562 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 360019 9961282 ~ 9964606 (-) True G89708
TU120687 other upstream 438294 10039557 ~ 10042853 (-) False LOC103025178
TU120738 other upstream 622257 10223520 ~ 10224663 (-) True G89751

Expression Profile