LOC103040854 (LOC103040854)


Basic Information

Item Value
gene id LOC103040854
gene name LOC103040854
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 9198386 ~ 9199959 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250444.2
ATGACAATCCCACGAGTCGCACAGCACGCATGATTGGGTGCAGCGTGTGTAGGAAATCCACATAAGGTAAAGCGGCAGTGAGCGTAGAGCAGCACTGCATCTCCCGCCTGTTTACAACCAGACCGCGGTAAACATGAGCGGGTTCAGCTCGGTTCTGGTTGTGGTGCTGCTGGTTGCCCTGTCTTGCTCAGGACAAACTCTTGAGTGCTTTCGGTGTGATCTTGGGTTCTGGGATGTGTGCTACACTACCAAAACCAACTGCAGTTATGAGGAGCAATGTTTTGTTGGAATTGGTAAGGCAGCCTCTGTCCTAGATATAAAGGTGATGGGCTGCCTTCCAGTAAAAGACTGCAACAAGACTACCACTATAGAGTTCAGTTCAAATAAAACCCTGTACACCATGACCAAGAACTGCTGTGAAGAAGACTACTGTAATGGAAGCCCTGGTGCGCTTATGGCATCTGTTACACTGACTATATTAACTGTTGCCCATACAATTATTTCTCAAACAGGTGTATATTAAGGGTTTAAAGGGATTGTACTGATGTAGTTAAAGTCTTCAAAATGTTTGTGTCCTATGCACTTGGGTTatctttgtgtttttgccaagtttagATTTTACAGTGAAGGGCAACATTGAATTTGACTAtagaaagtgttttaaatgttggtGAAACAATTGTAACAGTTTAAAATTCTTAAGTGTGTTgaataaatgtcttttttgaATAAAAGGTTTTATCCTTTGTTTTGTATTAAGCCTAAA

Function

NR:

description
sperm acrosome membrane-associated protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250444.2 True 766 mRNA 0.42 3 9198386 9199959

Neighbor

gene id symbol gene type direction distance location
cep192 NA coding downstream 3110 9171560 ~ 9195276 (-)
mrs2 mrs2,LOC107686945,LOC107596696,LOC107748556,LOC106606027,LOC106595277 coding downstream 43767 9148617 ~ 9154619 (-)
LOC103040550 NA coding downstream 54223 9108763 ~ 9144163 (-)
LOC103038042 cpq,pgcp coding downstream 97921 9080413 ~ 9100465 (-)
LOC103031295 NA coding downstream 182679 9012446 ~ 9015707 (-)
LOC103044039 zgc:92912,vamp1,LOC103044039,LOC108268517,LOC108429010,LOC106529171 coding upstream 289607 9489566 ~ 9496969 (-)
LOC103044521 LOC108429011,LOC108268485,LOC107684166,LOC107596688 coding upstream 306483 9506442 ~ 9529903 (-)
ecm1 NA coding upstream 331223 9531182 ~ 9539373 (-)
LOC103035430 LOC108429015,LOC108273951,LOC107741974,LOC107596682,LOC107684164,LOC107656700 coding upstream 344212 9544171 ~ 9582143 (-)
LOC103035109 NA coding upstream 388095 9588054 ~ 9601264 (-)
G89333 NA non-coding downstream 42119 9154761 ~ 9156267 (-)
G89331 NA non-coding downstream 59518 9132183 ~ 9138868 (-)
G89328 NA non-coding downstream 68266 9091623 ~ 9130120 (-)
G89322 NA non-coding downstream 116280 9081282 ~ 9082106 (-)
G89299 NA non-coding downstream 179958 9008103 ~ 9018428 (-)
G89399 NA non-coding upstream 121584 9321543 ~ 9321887 (-)
G89400 NA non-coding upstream 144192 9344151 ~ 9344367 (-)
G89405 NA non-coding upstream 153777 9353736 ~ 9359273 (-)
G89410 NA non-coding upstream 177530 9377489 ~ 9377998 (-)
G89511 ncald,ncalda,LOC103042493,LOC106594940,LOC106931336,LOC108268956,LOC100692199,LOC105901278 non-coding upstream 207879 9407838 ~ 9453541 (-)
G88789 NA other downstream 1955816 7241711 ~ 7242570 (-)
LOC103026131 LOC108431006 other downstream 1983147 7103571 ~ 7215239 (-)
G88779 NA other downstream 2080260 7117661 ~ 7118126 (-)
vstm2a vstm2a other downstream 2465722 6676275 ~ 6732664 (-)
G88465 NA other downstream 4603061 4595058 ~ 4595325 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 584664 9784623 ~ 9854099 (-)
G89690 zyx,LOC108428910 other upstream 694866 9894825 ~ 9901700 (-)
G89708 gapdh,LOC107550818 other upstream 761323 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 811858 10011817 ~ 10042853 (-)
G89751 NA other upstream 1023561 10223520 ~ 10224663 (-)

Expression


Co-expression Network