G89333


Basic Information

Item Value
gene id G89333
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 9154761 ~ 9156267 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU120144
tttcatacataagatgtaGCTCAAAGTGCTTTTCAATATAAGATCAATATACAAGATAATTACCAGAGGTACATTACAACAAGGTAAACAAAATAATAGGAAAAGTGAATACCAAACAAGAAAAAgtagggagagagaaaaaaaaaaaatatatcagcaaaacatagaaacaataaatataaaatataatttataaagctAGTAGAAAACGAGGGTGTATAGATgtgttttaagctgttttttaaattgtgtaataTCTGGTGACTGTCGAATGTGTATCGGTAGAGAGTTCCAGATTTTTGGTGCATAAAAACAGAAGGCAGCTTCACCCGTCTTTTTATATTGCATTTTAGGAATATCTAATAAAGCAGCTCCTGATGATCTTAGAGCTCGATCTGGAACATATTCTGTCAATAGTTCAGAAATGTAATGAGGAGCTGATCCAGTCAGACATTTAAAAACCAGTAAGAGAATCTTAAAATCTATTCTAAATGGCACTGGCAGCCAGTGCAGTGAAGCTAGAACAGGTGTGATGTGTTCTCTCTTTTTAGCGCGAGTTAGAACTCTAGCTGCAGCGTTCTGAACCAGCTGTAATCTGTCAGTAGTAGATTTTGGGAGCCCAGTAAATAACGCATTACAGTAATCTAGTctagagaaaacaaaagcatggATTAATTTCTCAGCATCCATCTGTTTGAGGAAAGGTCTAACTCGTGTAATATTTCTTAAGTGATAGAAAGCTGTTCTTGTAACATTTCCAATATGAGGTTTAAAAGTTAAACTTGAGTCTAGAATTACACCCAGATTTCTAATTTCATCTTTAACTTGTGGAGCCAAATTTCCAAGTTGGCCTAAAACTATAGATTTTTCTGTTGTGTTGCCAATTATAAGAATTtcagttttttcttcatttaatttGAGGAAATTTCTATTCATCCAGTTAATGATGTTGGTCAAGCAGGACGTTAGTCTGTCTAGAGCTCTTGTATCATTTTGCtcaacagaaatataaagctgtgTGTCATCTGCATAACTGTGATAGctgactccatgtttttttataatatgtcCTAAAGGAAGCATATAaagagagaacagtagaggaCCTAGAACTGAACCCTGAGGGACAccataatttatattataatcaTTAGATCTATGCTCGGCTAGACTAACAAAGAACTTTCTGCCTTTAAGATATGATTTAAACCACTGTAGGACTGTTCCTGAGAGGCCAACCCAATTTTCAAGTCGATCTATTAAAATGTCAAGGTCTACAGTGTCAAAAGCTGCACTGAGATCTAAGAGAAGAAGGACAGAGACCTGGCGTCTGTCAGAATTTACTCTGAGATCATTTACTATTCTGACCagatatgaatatgaacgtgttttctttgcatcatttgaggtctaaaagctctgcatcttttttttagccatttctcgttttctgcaaataaatgctctaaatgacaatataatagcaaaatcagagaaactggttcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120144 True 1507 lncRNA 0.35 1 9154761 9156267

Neighbor

gene id symbol gene type direction distance location
mrs2 mrs2,LOC107686945,LOC107596696,LOC107748556,LOC106606027,LOC106595277 coding downstream 142 9148617 ~ 9154619 (-)
LOC103040550 NA coding downstream 10598 9108763 ~ 9144163 (-)
LOC103038042 cpq,pgcp coding downstream 54296 9080413 ~ 9100465 (-)
LOC103031295 NA coding downstream 139054 9012446 ~ 9015707 (-)
LOC103045042 LOC108242159 coding downstream 259323 8812404 ~ 8895438 (-)
cep192 NA coding upstream 15293 9171560 ~ 9195276 (-)
LOC103040854 LOC103040854 coding upstream 42119 9198386 ~ 9199959 (-)
LOC103044039 zgc:92912,vamp1,LOC103044039,LOC108268517,LOC108429010,LOC106529171 coding upstream 333299 9489566 ~ 9496969 (-)
LOC103044521 LOC108429011,LOC108268485,LOC107684166,LOC107596688 coding upstream 350175 9506442 ~ 9529903 (-)
ecm1 NA coding upstream 374915 9531182 ~ 9539373 (-)
G89331 NA non-coding downstream 15893 9132183 ~ 9138868 (-)
G89328 NA non-coding downstream 24641 9091623 ~ 9130120 (-)
G89322 NA non-coding downstream 72655 9081282 ~ 9082106 (-)
G89299 NA non-coding downstream 136333 9008103 ~ 9018428 (-)
G89288 NA non-coding downstream 204473 8949968 ~ 8950288 (-)
G89399 NA non-coding upstream 165276 9321543 ~ 9321887 (-)
G89400 NA non-coding upstream 187884 9344151 ~ 9344367 (-)
G89405 NA non-coding upstream 197469 9353736 ~ 9359273 (-)
G89410 NA non-coding upstream 221222 9377489 ~ 9377998 (-)
G89511 ncald,ncalda,LOC103042493,LOC106594940,LOC106931336,LOC108268956,LOC100692199,LOC105901278 non-coding upstream 251571 9407838 ~ 9453541 (-)
G88789 NA other downstream 1912191 7241711 ~ 7242570 (-)
LOC103026131 LOC108431006 other downstream 1939522 7103571 ~ 7215239 (-)
G88779 NA other downstream 2036635 7117661 ~ 7118126 (-)
vstm2a vstm2a other downstream 2422097 6676275 ~ 6732664 (-)
G88465 NA other downstream 4559436 4595058 ~ 4595325 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 628356 9784623 ~ 9854099 (-)
G89690 zyx,LOC108428910 other upstream 738558 9894825 ~ 9901700 (-)
G89708 gapdh,LOC107550818 other upstream 805015 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 855550 10011817 ~ 10042853 (-)
G89751 NA other upstream 1067253 10223520 ~ 10224663 (-)

Expression


Co-expression Network