RNA id: TU120144


Basic Information

Item Value
RNA id TU120144
length 1507
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G89333
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 9154761 ~ 9156267 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttcatacataagatgtaGCTCAAAGTGCTTTTCAATATAAGATCAATATACAAGATAATTACCAGAGGTACATTACAACAAGGTAAACAAAATAATAGGAAAAGTGAATACCAAACAAGAAAAAgtagggagagagaaaaaaaaaaaatatatcagcaaaacatagaaacaataaatataaaatataatttataaagctAGTAGAAAACGAGGGTGTATAGATgtgttttaagctgttttttaaattgtgtaataTCTGGTGACTGTCGAATGTGTATCGGTAGAGAGTTCCAGATTTTTGGTGCATAAAAACAGAAGGCAGCTTCACCCGTCTTTTTATATTGCATTTTAGGAATATCTAATAAAGCAGCTCCTGATGATCTTAGAGCTCGATCTGGAACATATTCTGTCAATAGTTCAGAAATGTAATGAGGAGCTGATCCAGTCAGACATTTAAAAACCAGTAAGAGAATCTTAAAATCTATTCTAAATGGCACTGGCAGCCAGTGCAGTGAAGCTAGAACAGGTGTGATGTGTTCTCTCTTTTTAGCGCGAGTTAGAACTCTAGCTGCAGCGTTCTGAACCAGCTGTAATCTGTCAGTAGTAGATTTTGGGAGCCCAGTAAATAACGCATTACAGTAATCTAGTctagagaaaacaaaagcatggATTAATTTCTCAGCATCCATCTGTTTGAGGAAAGGTCTAACTCGTGTAATATTTCTTAAGTGATAGAAAGCTGTTCTTGTAACATTTCCAATATGAGGTTTAAAAGTTAAACTTGAGTCTAGAATTACACCCAGATTTCTAATTTCATCTTTAACTTGTGGAGCCAAATTTCCAAGTTGGCCTAAAACTATAGATTTTTCTGTTGTGTTGCCAATTATAAGAATTtcagttttttcttcatttaatttGAGGAAATTTCTATTCATCCAGTTAATGATGTTGGTCAAGCAGGACGTTAGTCTGTCTAGAGCTCTTGTATCATTTTGCtcaacagaaatataaagctgtgTGTCATCTGCATAACTGTGATAGctgactccatgtttttttataatatgtcCTAAAGGAAGCATATAaagagagaacagtagaggaCCTAGAACTGAACCCTGAGGGACAccataatttatattataatcaTTAGATCTATGCTCGGCTAGACTAACAAAGAACTTTCTGCCTTTAAGATATGATTTAAACCACTGTAGGACTGTTCCTGAGAGGCCAACCCAATTTTCAAGTCGATCTATTAAAATGTCAAGGTCTACAGTGTCAAAAGCTGCACTGAGATCTAAGAGAAGAAGGACAGAGACCTGGCGTCTGTCAGAATTTACTCTGAGATCATTTACTATTCTGACCagatatgaatatgaacgtgttttctttgcatcatttgaggtctaaaagctctgcatcttttttttagccatttctcgttttctgcaaataaatgctctaaatgacaatataatagcaaaatcagagaaactggttcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120142 lncRNA downstream 15893 9132183 ~ 9138868 (-) True G89331
TU120139 lncRNA downstream 24641 9091623 ~ 9130120 (-) True G89328
TU120130 lncRNA downstream 72655 9081282 ~ 9082106 (-) True G89322
TU120102 lncRNA downstream 136333 9008103 ~ 9018428 (-) True G89299
TU120087 lncRNA downstream 204473 8949968 ~ 8950288 (-) True G89288
TU120231 lncRNA upstream 165276 9321543 ~ 9321887 (-) True G89399
TU120232 lncRNA upstream 187884 9344151 ~ 9344367 (-) True G89400
TU120242 lncRNA upstream 197469 9353736 ~ 9354562 (-) True G89405
TU120243 lncRNA upstream 197469 9353736 ~ 9359273 (-) False G89405
TU120248 lncRNA upstream 221222 9377489 ~ 9377998 (-) True G89410
XM_022673476.1 mRNA downstream 142 9148617 ~ 9154619 (-) True mrs2
XM_022673477.1 mRNA downstream 145 9148617 ~ 9154616 (-) False mrs2
XM_007250443.3 mRNA downstream 10598 9108763 ~ 9144163 (-) True LOC103040550
XM_022673350.1 mRNA downstream 54296 9080413 ~ 9100465 (-) True LOC103038042
XM_022673340.1 mRNA downstream 139054 9012446 ~ 9015707 (-) False LOC103031295
XM_007250436.3 mRNA upstream 15293 9171560 ~ 9195276 (-) False cep192
XM_007250435.3 mRNA upstream 15293 9171560 ~ 9195276 (-) True cep192
XM_007250444.2 mRNA upstream 42119 9198386 ~ 9199959 (-) True LOC103040854
XM_007250455.3 mRNA upstream 333299 9489566 ~ 9496969 (-) True LOC103044039
XM_022673485.1 mRNA upstream 350175 9506442 ~ 9529903 (-) True LOC103044521
TU119448 other downstream 1912191 7241711 ~ 7242570 (-) True G88789
TU119427 other downstream 2036635 7117661 ~ 7118126 (-) True G88779
TU119041 other downstream 4559436 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 4588557 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 5463297 3606470 ~ 3691464 (-) False lyrm4
TU120441 other upstream 646504 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 738558 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 805015 9961282 ~ 9964606 (-) True G89708
TU120687 other upstream 883290 10039557 ~ 10042853 (-) False LOC103025178
TU120738 other upstream 1067253 10223520 ~ 10224663 (-) True G89751

Expression Profile