LOC103040550


Basic Information

Item Value
gene id LOC103040550
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 9108763 ~ 9144163 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250443.3
tccccaaACTGCCCCTgcctcactctcgctctctctttctctgtgtgtgtttctgtcatcCTGTGGCGAGCTGCGGATCTACCGTGTCGAGGCAGCAGCGCTtcactcagcctcagctccagctccagttcGGTAAAGTTGTGTGAGGAGGAGAAGCCGGTCGTCGTCGAGGTTTCAGGCGGTTTTTAAGAGAAAGCTGACCACACTGCTGGAGTAAATCTCAACacaggagagaaagaaggagggaGAGCAGCGAAACAGAGcgaaaacacactcaaacacacaccgcGGACTGACTGAAGAGCGTCTCTTTCCCAGAGCTgagtctgctgctgctgagagaCGTGTGAGGAGGAATAATGAGGAACGTGTGGATGTTGATAACTCTCTGGGCTCTTTGCTTCTGGGGTGAAGGGGTGCTGGTGTCGGGTCAACCTTCCACAGCTGATGACATCTACCTGGAGGAACAGCATTCAGGTGATTATCctgttgatgatgatgactaCAACTCTGGCTCAGGATCAGGTTTCAGTGAAGATGATGAGGATAGAGTGTCAGTGAGAAAGGAGAACATGAATCCTGTGGAAACGTTCACTCAGACCAGCAGCCCCAGCCTGGAGACGTCCTCATATATTGATTATAGCTCAGCTGTGGACACCACAGAGGACTACCAGACTGACACAGAGGTGTTTGATTATCAAACTGAGGGGACACAGGGCATCGATGTAcccaccagcaccagcagttcccCTAGTCTGTCACAGGAATCTGAAAAGCACCACGAGGGGAAGAAAACCTCAGAAACCCTCTTCCAGAGGACAGAGGTGCTGGCAGCTGTTATAGCTGGTGGTGTGATCGGCTTCCTGTTTGCTatcttcctcatcctcatctTGGTGTACCGCATGAGGAAGAAGGACGAGGGCAGCTACGACCTGGGGGAGCGTAAACCACCCAGCACAGCCTACCAGAAAGCCCCAACCAAGGAGTTCTATGCCTAAATGACCATTTACTCTTTAACATCAACATCAGTCTACATGACAACCAGTTCCTCAGTCTTTTAAAAGAAAGCTGGAATGATGAAAGCCTGAGGAGGGTTATATTGGGAACCTTATTTAATAGCAAAGATGTTTTGCTTTATAAAGCCAATCAGGCCTTGTGTTTTCATTTTAGAttacaatttgtttattttgtggattttaaaaatgttggagaaaataatgtgtaatataaacCAGTGGATCATTTCTTAAAATTCATCCATTGACTACTTTGTAACTGTAGAGGTacatgtttgtattttttaaaaagcagataAGAGGTTAATATGTGGAATATAAATGTACTTCATCTTTTTCATTTAAATCATTGCCCTGATAGCTAGTTTCTTAATTTAGGTATCACaggaattttttatattgtaaagaTTTATTGTCCTTTGGGCTTGTTGTGCCATTTCTAGTTATGTCAACataaatttgtatatttttgttgatTAGAAGGACCAACCATTTCACAAAAGCTCTTCATGCCATATTTTGTCGTATTCCATATTTAGGTTGGAATTGCTTCAGACCCAAAATCCATATGttcaattttccttttttaatgaaGCCAAGAACAAATTCTAACATGCTTCAgcactctctgtctctgtcactttgtctgt

Function

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0004104 cholinesterase activity molecular_function

KEGG:

id description
ko00350 Tyrosine metabolism
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250443.3 True 1666 mRNA 0.44 5 9108763 9144163

Neighbor

gene id symbol gene type direction distance location
LOC103038042 cpq,pgcp coding downstream 8298 9080413 ~ 9100465 (-)
LOC103031295 NA coding downstream 93056 9012446 ~ 9015707 (-)
LOC103045042 LOC108242159 coding downstream 213325 8812404 ~ 8895438 (-)
LOC103046449 NA coding downstream 314938 8738885 ~ 8793825 (-)
LOC103046152 LOC103046152,LOC108430057,LOC108272427,LOC107584782,LOC107705557,LOC107660037 coding downstream 374876 8695370 ~ 8733887 (-)
mrs2 mrs2,LOC107686945,LOC107596696,LOC107748556,LOC106606027,LOC106595277 coding upstream 4454 9148617 ~ 9154619 (-)
cep192 NA coding upstream 27397 9171560 ~ 9195276 (-)
LOC103040854 LOC103040854 coding upstream 54223 9198386 ~ 9199959 (-)
LOC103044039 zgc:92912,vamp1,LOC103044039,LOC108268517,LOC108429010,LOC106529171 coding upstream 345403 9489566 ~ 9496969 (-)
LOC103044521 LOC108429011,LOC108268485,LOC107684166,LOC107596688 coding upstream 362279 9506442 ~ 9529903 (-)
G89322 NA non-coding downstream 26657 9081282 ~ 9082106 (-)
G89299 NA non-coding downstream 90335 9008103 ~ 9018428 (-)
G89288 NA non-coding downstream 158475 8949968 ~ 8950288 (-)
G89179 NA non-coding downstream 570240 8537835 ~ 8538523 (-)
G89176 abi2 non-coding downstream 594924 8508887 ~ 8513839 (-)
G89333 NA non-coding upstream 10598 9154761 ~ 9156267 (-)
G89399 NA non-coding upstream 177380 9321543 ~ 9321887 (-)
G89400 NA non-coding upstream 199988 9344151 ~ 9344367 (-)
G89405 NA non-coding upstream 209573 9353736 ~ 9359273 (-)
G89410 NA non-coding upstream 233326 9377489 ~ 9377998 (-)
G88789 NA other downstream 1866193 7241711 ~ 7242570 (-)
LOC103026131 LOC108431006 other downstream 1893524 7103571 ~ 7215239 (-)
G88779 NA other downstream 1990637 7117661 ~ 7118126 (-)
vstm2a vstm2a other downstream 2376099 6676275 ~ 6732664 (-)
G88465 NA other downstream 4513438 4595058 ~ 4595325 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 640460 9784623 ~ 9854099 (-)
G89690 zyx,LOC108428910 other upstream 750662 9894825 ~ 9901700 (-)
G89708 gapdh,LOC107550818 other upstream 817119 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 867654 10011817 ~ 10042853 (-)
G89751 NA other upstream 1079357 10223520 ~ 10224663 (-)

Expression


Co-expression Network