LOC103045042 (LOC108242159)


Basic Information

Item Value
gene id LOC103045042
gene name LOC108242159
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8812404 ~ 8895438 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605714.2
CCCTCCCACCGACCACAGCCACCAAACAACCGGAAGAAGCACCCGCATCAGCGCGAGAGCGGTGAGCTGGTGAGCTACGACGGCTGAGGAGAACTGAAAGTTCGCGGAGGAGCAGGAATAACAGTTGGAACGTCATATGTAAtccattgtgtgtgtttttttatctgtatggAAAAACGAACGCGGAGCAAGGAGAGACGAGCTAACCGGGACTGACCGTCAGCAAGGCTCGGCCATGCCCCCCGTGTGACAGTAGGCTAGCTGGTCCGGCTGCAGGAGCAGGATGTCAATATGGCTGCAACGCTGCTTGTTCCTCCCGGACCTGACAGCTTCCGGCGCTTCGTTCCTGAATCCCTTGCTGCCATCGAGCGGTGCATCGCAGAGGAGGCGGCCCGTCGTCCAAAAGGAGAGAGACGCAGCGACGACGATGATGAGAATGGGCCCAAGCCCAACAGCGACCTGGAGGCGGGGAAATCCTTGCCTTTCATCTATGGGGACATCCCGCCAGGCCTGGTGTCCGTCCCTCTGGAGGACCTGGACCCCTATTACCAGAACCAGACGACCTTTATAGTATTGAATCGTGGGAAGGCGATATTCCGCTTTAACGCCACGCCTGCCCTCTACTTCCTCAGCGCCTTCAACCCTCTGAGGAGAGTCGCCATTAAAGTGCTGGTGCATTCGATGTTCAGTTTTGTGATCATGTGCACCATTTTGACCAACTGCGCCTTCATGACGCTCAGCAACCCCCCAGAATGGGCTAAGAATGTGGAGTACACATTCACAGGGATTTACACGTTTGAGTCTCTGATTAAGATCCTAGCCCGGGGATTCTGTGTGGGGCACTTCACGTTCCTGCGAGACCCGTGGAACTGGCTGGACTTCAGTGTCATCGTCATGGCGTATGTAACTGAGTTTGTAAACCTAGGCAATGTGTCAGCTCTCCGCACTTTCAGAGTGCTCAGAGCGTTGAAAACAATCTCAGTTATCCCAGGCCTGAAGACGATTGTGGGCGCTCTCATCCAGTCGGTGAAGAAGCTGTCGGATGTGATGATCCTGACTGTCTTCTGCCTCAGTGTGTTTGCACTAATTGGCCTGCAGCTGTTTATGGGGAACCTGCGGCAGAAGTGTGTTAGGTGGCCGCAGTCCAATGGTACACAGAACTACAGCATGGAGCTGAATCTGTATAATAGTACCTTTAACTGGACCGAGTACATCCTCGATGACCGTAATTATTATTACCTCCCCAACCGCAGGGATGCTTTGCTGTGTGGGAACGCCAGTGATGCAGGGCAGTGTCCCGAAGGCTATACGTGCATAAAGGCCGGACGGAACCCTGACTACGGCTACACAAGCTTTGACACCTTCAGCTGGGCCTTCCTCTCCCTCTTCCGCCTCATGACGCAGGACTTCTGGGAGAATCTCTACCAGCAGACCCTGCGAGCTGCTGGGAAGCCCTACATGGTGTTCTTCGTGCTGGTGATTTTCCTAGGCTCTTTCTACCTTGTGAATCTGATTCTGGCTGTGGTGGCCATGGCTTACGATGAGCAGAACCAAGCTACCATTGAGGAGGCGCAACAGAAAGAGGAGGAGTTCCAGGCCATGCTGGAGCAGCTCAAACGGCAGCAGGAGGAGGCACAGGTTGCTGCGGCAGCGGCGACAGAGAGCGGCGAGTACAGCGGGAGGGGTGGGCTGTCGGAGGAGAGTTCCTCAGGGGGGTCCAGACTCAGCTCCAAGAGTGCCAAGGAGCGGCGGAATAGGcggaagaaaagaaaacagagggaggaggaggaggaagaagagaagGCCGACCAGGAAAAGTTCCACAAGTCAGAGTCGGAGGACAGCATCCGCCGGACCGGGTTCCGTTTCTCCATCGACGCCAACAGGCTGTCCTATGAGAAGAAGTGTTCCACCCCAAATCAGTCTCTTCTCAGTATCCGGGGCTCTCTGTTTTCTCCGAGGAGGAACAGTCGCGCGAGTTTGTTCAGCTTTCGCGGTAGAGCGCGAGACTTCGGCTCTGAAAACGACTTTGCAGATGATGAGCACAGTACGTTTGAGGACAGTGACAGTCGGCGAGGGTCGCTCTTCGTGCCACGACGCATCGAAAGGAGGAACTCGACCGTCAGTCAGTGCAGCCTTGCCGCCCCCAGAATCATGCTGCCAGCCAATGGGAAGATGCACTGCACAGTGGACTGCAATGGAGTGGTTTCGTTGGTGGGCGGGACCTCTGTGCCTACATCACCAATTGGCCGATTGCTTCCCGAGGGCACAACTACAGAGTCTGAAGCTCGGAAGAAGCGGTCAGGGTCACATCAGACCTCAGACTACTTGGATGAAACAGTGGCAAGAAAGAGAGCTATGAGTGTGGCCAGTATTCTCACAAACACCATGGAGGAGCTAGAGGAGTCCAGACAGAAGTGTCCACCCTGCTGGTACAAATTCGCAAATAGCTTCCTAATCTGGAACTGCTGTCCGATGTGGCTGAAGGTGAAGACCATTGTGAAAATGATTGTGATGGACCCGTTTGTAGACCTGGCCATCACCATCTGCATCGTCCTCAACACGCTCTTCATGGCCATGGAGCACTACCCCATGACCAAAGTCAACGACGTGCTCTCTGTTGGAAACCTGGTGTTCACAGGGATCTTCACAGCTGAGATGTGCCTGAAGGTCATTGCGCTGGACCCATACTACTATTTTCAGGAGGGCTGGAACATCTTTGATGGCATCATTGTGAGCTTAAGCTTGATGGAGCTGGGCCTGGCCAATGTGGAGGGTCTCTCTGTGCTCAGGTCCTTCCGATTGCTGAGAGTGTTTAAGCTGGCCAAGTCGTGGCCCACTCTGAACATGCTGATCAAGATCATCGGAAACTCAGTGGGTGCCCTGGGTAACCTGACCCTGGTCCTGGCCATCATCGTCTTCATCTTCGCAGTGGTGGGCATGCAGTTGTTTGGGAAGAGCTatcgtgagtgtgtgtgtaagatcgCAGAGGACTGTGAGCTGCCGCGCTGGCACATGGTGGACTTCTTCCACTCCTTCCTGATCGTGTTCCGTGTGCTGTGTGGAGAGTGGATCGAGACCATGTGGGACTGCATGGAGGTGGCCGGACAGACCATGTGCCTCATCGTCTTCATGCTGGTCATGGTGATCGGGAACCTGGTGGTGCTGAACCTCTTCCTGGCCTTGCTGCTGAGCTCTTTCAGCGCCGACAACTTGGCAGCCACCGACGACGACAGCGAGATGAACAATCTGCAGATCGCCGTGGGCCGCATCCAGAAAGGCATCGCCATGATCAAGTCAGCCGTGCGGCAGTTCCTCCAGAGCATCTTCCTGGCAGGCCGCAAACCAGGGGCTCTGGATGAGGAGAAGCCGCTGGACGACCTCCACAGCGACGGCAAAGAGAACTGCCTGACCAATCACGCACCGGTGGTTGTCGACCTGGGCAAGGACTATCTTAAGGAGGACTGTGTCTCCCCTGGAAACGGGGTGGAAGGGCACGTAAAGTACGGCATCGAGGAGGGGGACTACATGTCGTTCATCCACAACCCCAGCCTCACGGTCACCGTGCCCATCGCGGTGGGAGAGTCGGACTTTGAGAATCTGAACACAGAAGATTTTAGCAGCGACTCGTCTGACGTGGAGGGGAGCAAAGAGaaactTCCTGAGGACAATGTACTCAGCTCATCTGAAGGGAGCACGGTGGACATCCGACCTCCTGGAGAGGGGGCTGAATCTGTTGAGCTAGAACCAGAAGAGTCACTGGACCCGGAGGACTGCTTTACTGaagGCTGTGTGATGAGGTTTCAGTGTTGCCAGGTGGACATAGAGAAGGGAAAATGGAAGAGCTGGTGGACTCTGAGGAAGACGTGCTTCATCATCGTCGAGCACAACTGGTTTGAGTCCTTCATCATCTTCATGATCCTCCTGAGCAGTGGCGCTCTGgCATTTGAGGATATCTACATAGAGCAGCGGAAGACGATAAAGACTGTTCTGGAATATGCTGATAAAGTCTTCACCTACATCTTCATCCTGGAGATGTTGCTGAAATGGGTGGCATATGGCTTCGTCAAATACTTCACCAATGCCTGGTGCTGGCTCGACTTCCTCATTGTAGATgtgtCTTTGGTCAGTCTGGTTGCAACTGCTTTAGGTTACTCTGAGCTAAGTGCCATTAAATCACTGAGGACCCTGCGTGCTCTGAGACCATTAAGAGCGCTGTCACGTTTTGAGGGCATGAGGGTTGTGGTAAATGCTCTGCTTGGCGCCATTCCCTCCATTATGAACGTGCTGTTGGTGTGCCTGATCTTCTGGCTCATCTTCAGCATCATGGGCGTCAACCTGTTCGCCGGCAAGTACTACCACTGTGTCAACAGCACCACAGACGAGATGTTTCCCATTAGTGAAGTCAACAACAAATCGGAGTGCTTGGCCCTCAACGAGAGCGCTCGCTGGAAAAACGTCAAGATCAACTTCGACAATGTGGGAGCTGGATACCTGGCCCTGCTGCAAGTGGCTACATTTAAAGGCTGGATGGACATCATGTATGCAGCAGTGGACTCTCGGAATGTAGAGGATCAGCCAGACTATGAAGTGAACCTCTACATGTATCTGTATTTCGTGATCTTCATCATCTTTGGCTCCTTTTTCACACTCAACCTCTTCATTGGTGTGATCATCGATAACTTCAACCAGCAGAAGAAAAAGTTTGGAGGTCAGGATATCTTCATGACAGAAGAGCAGAAGAAGTATTACAATGCCATGAAGAAGCTAGGCTCAAAGAAACCGCAGAAACCCATCCCCAGACCTAcgAATAAGTTCCAAGGCCTTATTTTTGATTTGATCACCAAGCAAGCCTTTGACATTATCATCATGATCCTGATCTGCCTAAACATGGTGACAATGATGGTGGAGACAGATGACCAGACGAAAGAGATGGACAATATCCTGTACTGGATTAACCTGGTCTTCATCGTTCTCTTCACTGGCGAATGTGTGCTCAAAATGGTTTCCCTGCGACACTACTTCTTCACTGTTGGCTGGAACGTGTTTGACTTTGTGGTTGTGATTTTGTCAATTGTTGGTATGTTCCTCTCGGAGGTGATTGAGAAGTACTTTGTATCACCCACCTTGTTCCGAGTCATCCGTCTGGCTAGGATCGGCCGCATTCTCCGTCTCATCAAGGGGGCCAAGGGCATCCGTACCCTCTTGTTCGCCTTAATGATGTCCCTTCCTGCTCTTTTCAACATTGGTCTCCTACTCTTCCTGGTCATGTTCATCTATGCCATCTTCGGCATGTCCAACTTTGCCTTTGTGAAGCACGAGGCCGGCATCGACGACATGTTCAACTTCGAGACGTTCGGCAACTCCATGCTGTGCCTCTTCCAGATCACTACGTCGGCCGGCTGGGACGGTCTGCTGGCGCCTATCCTGAACAAGCGTGAGCCTGACTGCGACAGCGAGACAGAGCACCCAGGCAACTCGTATCGCGGCGACTGCGGCAACCCCTCGGTGGGCATCTTCTTCTTTGTTAGCTATATCATCATCTGCTTTCTGATTGTTGTCAACATGTACATCGCAGTCATCCTGGAGAACTTCAGCGTCGCCACTGAGGAGAGTGCAGAACCACTGAGTGAAGATGACTTTGAGATGTTCTATGAGGTATGGGAGCGATTTGATCCCAACGCCACGCAGTTTGTGGAGTATGACAAGCTGTCTGACTTTGCCGACTCTCTAGACCCTCCGCTGCGCATACCCAAGCCTAACAAGATCCAGCTGATCGCCATGGACTTGCCCATGGTCAGCGGTGACCGCATCCACTGCCTGGACATCCTGTTTGCCTTTACCCTTCGGGTCCTCGGGGAGGAGGGCGAGATGGATGCGCTGCGTGGCCAGATGGAGGAGCGCTTCATGGCCTCCAATCCCTCTAAGGTGTCGTATGAGCCCATCACCACCACGTTGCGCCGCAAGCAGGAGGAAATGTCGGCCATCATCATACAGAGAGCCTTTCGCCACTACCGAATCCGGTTAACCGTAAAGAAAGCTTCGGACATGTACCGGCAGAGGCTGAAGGACGGTGGCGAACAGCCGGCCGAGAAAGAGGTGCTCGTGATCTGCAAATTCCACGAAAATTCTGCGTCGGACAAGACTGACATGACCCCATCCTCTGCCTCGCCGCCCTCCTACAACAGCGTGGCAAAGTCAGAGAAGGACAAGTATGAGAAGGAGAGGCGTGAGAAGGAGGACAATGCGAAAGACAATGCACGTGGAAAGAAGAAATGAAGACTTCAAAAGGTCCGCATTTGAGCAGAAGAAAGAAACGAAAGGAAGGACCAAATAGGGACACTTCGCTGTTTCAATGAGACACTGTTTACAGATCCATCGGAGACATGGTGTGTGGACTTCCTTACAAGGTTTTGGTGGGACCATGCCAAACAGAGCGTGTgcttggatgtgtgtgtgtgtgtacgtataCGTATTGCTGTGTGTGGTGGAGGATGTGTGGGTGCACAGGGACGGACTGATCCCCAAGTCTGTGTTAGGAAGGTAGAGCACAACACATTCACAACACAAGGACTTCAACACTTAACATTTCGATCACACACATGCTctcacgtgcacacacacacacgctgtttcccacgcacacacacgtgGACGTGCACACTGACGAGTGTGACTGTGACTGTTAAGAAGGACAGGACTTATAGGGAATGGCTTGGCTTGTGCAGAGCGTGTGGGTTTGTCTTTTCATTTCGAGTGTTGTGAAACAATCCTGAGGACTGTAGGGAACTGTTACGCGGTCATCAGTAGCTAGTACTGCCACTACCACTGGTGTCCTTCTTCTTTCTGAATAgcgtattattatatatacctgcacatttttgttacattagctcgtttttttaaacatgacaCCATGTCAAATTTTCTAGTCATGAGTTTGATTGTGTGCACTGTTTCATTACAAAGGGCAAGTCCGTGAAAAGGGATATGGGAAACGGAAGCTAAAGAAGGCATCTGATGGTCCATCTTTAACAGATCACACATGAATGACATCTGTTAACATGTGGAACACAAAAATTTCAATTACAGGAtcgtgtgtctgtgtctctgaaTCACTCTTGAGGTTGAATGGCCTCCTTGTTGTGAGCACAAGGCTTTTTTTGAGGTTCGGGTGTTTTGCTGCCTCTGGGATAGCGGGAATGTTTTACATAATCATAGCTAGAGATGTATTGCTGCGCTGCCttatttaacacaaaaaaaacaaacaagaaaagacaaaaaacaaaaagtgtaaCAAGCAGTCGATTCTAGAGTAAGCGAGGGAAGCTCAAATCTCACGTATTTTCACCAAGTGAGTCAGCAAGGTAAATATGTCTCACTATGGTGGTTGAGACTCCTCAAAGAACAACCTTTTACGTATGGGAAATAATTCTGAGTTGATTAGGAGTAAAACACCACATGCTCTCCCCCTCCTGGTTAACATAAGTTTGGCAGACTCACCTAATGAACTCACGCCTGAATGTCCACTCCTGTGAAACGCCGAACAAAATCCCTGGGCAGAGTTCCCCAAAGATCATCGTAACAAAGATCATCAGAACGGCTACAAAGAGGGTGTTCAAATGGTACTAATTCTCTCTACCGTCCTTAATGTGATCTGCGTACTGTGCTGCATCGCTTCTGGGAACCCAAAGTCCACAACAGTAATGTAACCTTATTGAATGTCTTTCTTCTCAAACCTCTCTCTTAGACTCTTTGTTTTTTATCAgatcaaaaaagaaagaaagaaagagaaaatagcTTCCAAAAACGAGCATTCCATGCAGGTCAACtactagggctgtgtattggcaggAACTAGATGATACAACATGTATCACGATATAGGGGATACGATTcaatgtattgcaatatatggCGATACTGTAAGAAACGCGATATATTGCGAATGTTTAAtcacattttagaaaaaaaagaactgtcatagtataaaatcatgtttataaaatctaagtaaaagaaaagtatCTATTTATGCAACTATAACAGAGGCATCTAACAACAGATTACAACGCTGTCCTCTAGTGCTCCGGGTTTGAACACAAAATAAAGCACCAATCTTTacacataaacaaataattcaaaatcaatactgtgttttaaaatcGATACAGTATTGCGAAACTCAATATTGCGATACTTTGATGTATCGCtcttttcttacacccctatcAGCTAGTGGGAAAACTTGCAGCTCAAAGAACAACCGATCTCGTTGTTTCGAAACTCATGGAaaaagcagagcagagcagtatCGGCTGGTTTTAAACATTGCAGTGATGATATCAGCTCTTCTGTTTGAACTTGTGACCCGGTGGTGAATCTGTATGTACATATTGGCACTCTGTATCTCACCTCTGTACTCAACACTGTAGAGGAGCACTTTTACATGCCACTAAAACTGCCATCTGGATGCATATTATCCAtattatgtgagtgtgtgtgtgtgtgagggtgtgtgtgagtgtatgcacagagagagacagagagatatatagtatatatgtgtgtgagacagagagctAGTATATATGTGACTGTACTGGGACCAGCATTGATGTGCTTTATTCCCATTCTCTTGTTCAatgtttatattgtaaataGTAGTTTAAAgctcatgtttttattttctttttctttattttttatttattaaccgattttgtttacattttttgcacAGTGCTACAGTATGTGTGAGGGTCAGGTCCcggttttaaatgtaaatatgaaattTATGAAGCAATCAGTGGTGGTCATATTTCATTCGTAGTGTTGTAGTAAACTGCATGCACTATACTAACCAACTACATGgtgacattattttaaaaagccaaAAGAATAAAGATCATATTTTTTGTACCAAAGTATACTTAATTTCCTCATCACTATCTGTCACACAATATTCTATCACTGATCCCCAAAATGTACCGAAAGATTTTTATCTCTATCTCTGAGAAATGcatactttgtttttgttacatCGAAATGTATTCTGAGTTGAATATCTGTGACCTTATTTTTGGGTtcgtttggttttgttttgttttttcaaaatgtgcaaaatgctttttttttctttgaatcaGAGAAAAGAGGTTTCAGACGTACACTGTAGTTTTCCAAAATAAAGCATATTTTGGGAAGCCAT

Function

NR:

description
PREDICTED: sodium channel protein type 2 subunit alpha-like isoform X2

GO: NA

KEGG:

id description
K04834 SCN2A, NAV1.2; voltage-gated sodium channel type II alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605714.2 True 9211 mRNA 0.49 28 8812404 8895438

Neighbor

gene id symbol gene type direction distance location
LOC103046449 NA coding downstream 18579 8738885 ~ 8793825 (-)
LOC103046152 LOC103046152,LOC108430057,LOC108272427,LOC107584782,LOC107705557,LOC107660037 coding downstream 78517 8695370 ~ 8733887 (-)
nudt15 LOC107705561,LOC107584789 coding downstream 267799 8541475 ~ 8544605 (-)
LOC103046974 itm2b,LOC108430053 coding downstream 275547 8524435 ~ 8536857 (-)
LOC103032246 NA coding downstream 333833 8460998 ~ 8478571 (-)
LOC103031295 NA coding upstream 117008 9012446 ~ 9015707 (-)
LOC103038042 cpq,pgcp coding upstream 184975 9080413 ~ 9100465 (-)
LOC103040550 NA coding upstream 213325 9108763 ~ 9144163 (-)
mrs2 mrs2,LOC107686945,LOC107596696,LOC107748556,LOC106606027,LOC106595277 coding upstream 253179 9148617 ~ 9154619 (-)
cep192 NA coding upstream 276122 9171560 ~ 9195276 (-)
G89179 NA non-coding downstream 273881 8537835 ~ 8538523 (-)
G89176 abi2 non-coding downstream 298565 8508887 ~ 8513839 (-)
G89169 NA non-coding downstream 338664 8472574 ~ 8473740 (-)
G89141 NA non-coding downstream 389613 8419677 ~ 8422791 (-)
G89134 als2 non-coding downstream 408025 8397540 ~ 8404379 (-)
G89288 NA non-coding upstream 54530 8949968 ~ 8950288 (-)
G89299 NA non-coding upstream 112665 9008103 ~ 9018428 (-)
G89322 NA non-coding upstream 185844 9081282 ~ 9082106 (-)
G89328 NA non-coding upstream 196185 9091623 ~ 9130120 (-)
G89331 NA non-coding upstream 236745 9132183 ~ 9138868 (-)
G88789 NA other downstream 1569834 7241711 ~ 7242570 (-)
LOC103026131 LOC108431006 other downstream 1597165 7103571 ~ 7215239 (-)
G88779 NA other downstream 1694278 7117661 ~ 7118126 (-)
vstm2a vstm2a other downstream 2079740 6676275 ~ 6732664 (-)
G88465 NA other downstream 4217079 4595058 ~ 4595325 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 889185 9784623 ~ 9854099 (-)
G89690 zyx,LOC108428910 other upstream 999387 9894825 ~ 9901700 (-)
G89708 gapdh,LOC107550818 other upstream 1065844 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 1116379 10011817 ~ 10042853 (-)
G89751 NA other upstream 1328082 10223520 ~ 10224663 (-)

Expression


Co-expression Network