LOC103032246


Basic Information

Item Value
gene id LOC103032246
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8460998 ~ 8478571 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248899.2
ATTGTGCCTAAATTGACAGGTGGGGCTGTTGTTAAGTGACTCATGAGAGTCTCTTTAAATGTGCTCTGTTAGGGTTGGTGTAAAGCTTTGTTTAACTAGGTTAAAGACAGTTAGACAGTAGAAGATGTTGAATGTTgttataataacattatttaGCTCGTTTGTTGCTTTCTGTAGAGCTCAGGAGCAGAAGGACCCGTGGCAGATGGCCAGAGGTAACAGTTTACCCAGTTTTCCACAGCAGCTCCGACAGGACACGATACAGCCCGGCGGCTACCCGCTCCTCCAGTCCTCCCCGAACAGCGTGTATTATCAGCCCCCAGCCCAGCAGCAGCTCCCAGACCGCGGGGACCCGCAGCGCTGTGCGGTGGAGGACTCCTCCCGGGTGGAGTGCGGGGAGCCCGGGATCAGCCCGGCTGACTGCGAGGCCCTGGAGTGCTGTTACGATACTCGACAGTATATTCGAGCTCCTGATGGACCCCTGTGCTACTATGGAAAAACGGTCACTGTACAGTGCACCAAAGACGGGCAGTTTGTGGTGGTTGTGGCCAGAGACACCACCGTACCTCGGATCAGCCTGGACAACATCAGCCTGCTGGAGGCCGGTGGAGAACTTTGCACTGCCATCGACAGTAATATTGACTTCGCCATCTACCAGTTTCCAGTGACGACCTGTGGGACAAGGGCGAAGGTTGATGGTGATTATGTTGTTTATGAGAACATGATGGCGTCCTCATATGAAGTTGGATTCGGTCAACATGGTGCCATCACAAGGGACAGCTCGTTTGAGCTAACTTTCCAGTGTAGATATCTGGCTACAGCAGTGGAGGCTTTAAGGGTGGATGTGAACACTGTTCCTGCACCAGCTCCAGTGTTTCAGCAGGGTCCCCTACGAGTGGACCTCAGGCTTGCTAATGGCATCTGTGTCACTAAAGGATGTTCTGATGTGGACATATACAGCTCCTACTACACTGAGGCAGATTACCCTGTCACCAAGGCACTGAGGGAACCAGTGTATGTGGAGGTGCGCATGCTGGAGAGAACAGACCCGAGCATCGCCCTGGTGCTGAGCCACTGCTGGGCCACTTCCACCCCAAATCCATTAAGCCTGACTCAGTGGGACCTGCTGGTTAATGGGTGCCCGTATGAAGATGACCGTTATCAGACCACTGTGATTCCAGTTGGCCCCTCTTCTGGCCTGCAGTACCCAACCCACTACAAGCGCTTTGTTGTGGAGATGTTTGCCTTCGTGGACCAAACATCCCTCATTCCACAACAGGAACAGATCTTCATCCACTGTACCACAGCAGTGTGTCAAGTCTCTGCTCTGGACACCTGTGAACCAAGTTGTGGCAGAACAAAGAGAGCAGTTTCAACAACACAAGATCTAGAGAAGGTCCTAGTGTCCAGTGAGGAGGTCATCCTTCTTTCTGACCTGCCAGTTTCAGCTAAAAGCCGAGGGGACAGTAATGAAGGGTCTTGGGATTCAAGCTTTGGTCTGGTTGGAGTAGCTGCACTGGCTGTGTTGAGCATCTGTGGACTGCTTactgctgctctctgctggagaCGGCGGTTAAAACCTCGTCCTCTTCAGACAACAAGACTATGATGAATAAAGTTGTCTTGTGTCAAT

Function

GO: NA

KEGG:

id description
K19926 ZP1; zona pellucida sperm-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248899.2 True 1633 mRNA 0.52 9 8460998 8478571

Neighbor

gene id symbol gene type direction distance location
cdk15 cdk15,LOC107706659,LOC107677597 coding downstream 105321 8301794 ~ 8355677 (-)
LOC103024641 fzd7,fzd7b,LOC108430030,LOC107660027,LOC107581350,LOC107706658 coding downstream 193655 8262184 ~ 8267343 (-)
nop58 nop58,LOC107705548,LOC107660025 coding downstream 221870 8230069 ~ 8239128 (-)
wdr12 wdr12,LOC107677607,LOC107706661 coding downstream 251895 8200748 ~ 8209103 (-)
ercc3 ercc3 coding downstream 261908 8166929 ~ 8199090 (-)
LOC103046974 itm2b,LOC108430053 coding upstream 45864 8524435 ~ 8536857 (-)
nudt15 LOC107705561,LOC107584789 coding upstream 62904 8541475 ~ 8544605 (-)
LOC103046152 LOC103046152,LOC108430057,LOC108272427,LOC107584782,LOC107705557,LOC107660037 coding upstream 216799 8695370 ~ 8733887 (-)
LOC103046449 NA coding upstream 260314 8738885 ~ 8793825 (-)
LOC103045042 LOC108242159 coding upstream 333833 8812404 ~ 8895438 (-)
G89141 NA non-coding downstream 38207 8419677 ~ 8422791 (-)
G89134 als2 non-coding downstream 56619 8397540 ~ 8404379 (-)
G89135 als2 non-coding downstream 71970 8385432 ~ 8389028 (-)
G89074 NA non-coding downstream 186134 8274662 ~ 8274864 (-)
G89067 NA non-coding downstream 216454 8242350 ~ 8244544 (-)
G89176 abi2 non-coding upstream 30316 8508887 ~ 8513839 (-)
G89179 NA non-coding upstream 59264 8537835 ~ 8538523 (-)
G89288 NA non-coding upstream 471397 8949968 ~ 8950288 (-)
G89299 NA non-coding upstream 529532 9008103 ~ 9018428 (-)
G89322 NA non-coding upstream 602711 9081282 ~ 9082106 (-)
G88789 NA other downstream 1218428 7241711 ~ 7242570 (-)
LOC103026131 LOC108431006 other downstream 1245759 7103571 ~ 7215239 (-)
G88779 NA other downstream 1342872 7117661 ~ 7118126 (-)
vstm2a vstm2a other downstream 1728334 6676275 ~ 6732664 (-)
G88465 NA other downstream 3865673 4595058 ~ 4595325 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 1306052 9784623 ~ 9854099 (-)
G89690 zyx,LOC108428910 other upstream 1416254 9894825 ~ 9901700 (-)
G89708 gapdh,LOC107550818 other upstream 1482711 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 1533246 10011817 ~ 10042853 (-)
G89751 NA other upstream 1744949 10223520 ~ 10224663 (-)

Expression


Co-expression Network