wdr12 (wdr12,LOC107677607,LOC107706661)


Basic Information

Item Value
gene id wdr12
gene name wdr12,LOC107677607,LOC107706661
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8200748 ~ 8209103 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248879.3
TGCTGCTGTCTGCACATTAGAGCACATGGTGTTAGAGCAGTGCTCGGTGTAGATCCGGAGCGCCGCTGATCACATGTGGAGGTTCAGCACTTAATGATACaggatttatattatatacaggaaCATGTCGCAGCTCCAGGCGAGATTCTTCACCGAATATAAAAAATTCGCTATAGATGATGTTCCTTTCTCCATCCCTGCTGCTTCTGAAGTGAAAGATCTCAGCAATGTTATCAACAAGCTGCTGGAATTCAAGATCGCGGATCACAAACATGTGGAGTTTGACTTTCTGGTGCGGGGGCAGTTCCTCCGTACCTCTTTGGCCAATCACATGGAGACAGAGAACATCTCCACGGAAGAAGTTGTGGAGATCGAGTATGTGCAGAAGTTCACAGCTCCACAGCCAGAGGAGTGTATAATGCATGATGACTGGATCAGCTCTGTGGAAGCAGACTCAGAGTGGATCCTTACAGGTTCATATGATAAGACGGCACGGATCTGGTCTCTGGAAGGGAAGGCGGTGATGACTGTGGCTGGACACACAGACGTTGTGAAGGATGTAGCCTGGGTGAAAAGAGATGGGCTGAGCTCACTGCTGCTGACCGCTTCACTGGACCAGACTGTGCTGCTGTGGGAGTGGAACTCAGAACGGAACAAAGTGAAGGCCCGACACTGTTGCCGGGGACACGCGGGGAGCGTGGACACCATCGCTGTGGACCCCACCCGGACAAAGTTTTGCAGTGGCTCTTGGGACAAAATGTTAAAGATCTGGTCAGCAGTTCccacagaagaagaagatgaagtgGAGGAGCCCAACAGGCCTCGGAAAAAACAGAAGACTGAACAGATGGGACTGACGCGGACTCCTTTAATGACTCTATCAGGCCACGGTGAAGCTGTCTCCTCTGTTCTCTGGACGGATGCTGAGGAGCTGTGCAGTGCCTCATGGGACCACACCATTCGGCTGTGGGATGCTGAGACGGGTGTGCAGAAGAGCATGCTGACGGGCAGTAAGGTGTTTAACTGCATCTCGTACTCACCGCTGTGCCGCCGTCTGGCCTCAGGAAGCACAGACAGACACGTGCGCCTTTGGGATCCTCGCTCTAAAgatGGATCTCTGGTTCTGTTATCTCTGACGTCTCACACTGGCTGGGTAACGGCGGTCAGATGGTCTCTCTCCAACAACCATCAGCTGGTCTCCGGCTCTTTTGACAACGTGGTGAAACTGTGGGACATCAGgagCTGTAAGGCTCCTCTCTATGATCTGGCAGCTCACGAGGACAGAGTGATGTGTGCTGATTGGACAGAAAGTGGGTTAATCCTAAGTGGAGGGGCGGACAACAAGCTGTACACATACAAGTATGGGACATGTGTCTCTGATGCTGGGGCGTGATCCCCTGCCTGCATTACCCAGCATACACCTGGACACATCAACCCACAGTGCATTTGCATCATGGAAAAGCAGATACTACATCTTGACTCACCGTTCCAGTGCACACACCATGGCTAACAAGATCTTGCATCTTCAGAGCAGGACTGAATAAAGAGAATCACTCTGTAGTGGATTAAaaccatgttttattattttatatttttgatattcgcgtgtctgattttttttgtccctcAGCATACCTCTTTGTACTGGCTGTGtaatcagaaaaaatatatggaaaagATCAGCAGATTATTACAGTTATATTGCCTCAAAAGGTTGTCTTTGTTGTTCACTAAAGATTGTGATAATTATCTGTACATCCTTTTTGAGTGTATAattcatacatttaaataaactataaagCTAATACCA

Function

symbol description
wdr12 Predicted to enable ribonucleoprotein complex binding activity. Predicted to be involved in maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and regulation of cell cycle. Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of PeBoW complex and preribosome, large subunit precursor. Is expressed in several structures, including immature eye; musculature system; nervous system; neural plate; and segmental plate. Orthologous to human WDR12 (WD repeat domain 12).

NR:

description
PREDICTED: ribosome biogenesis protein wdr12-like

GO:

id name namespace
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0008283 cell population proliferation biological_process
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0070545 PeBoW complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0043021 ribonucleoprotein complex binding molecular_function

KEGG:

id description
K14863 WDR12, YTM1; ribosome biogenesis protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248879.3 True 1810 mRNA 0.48 13 8200748 8209103

Neighbor

gene id symbol gene type direction distance location
ercc3 ercc3 coding downstream 1658 8166929 ~ 8199090 (-)
LOC103026207 cyp27c1,LOC108430031,LOC108272716,LOC107677575,LOC107706664 coding downstream 42306 8149469 ~ 8158442 (-)
map3k2 map3k2,LOC107660022,LOC107677576,LOC107581346,LOC107584801 coding downstream 55749 8125546 ~ 8144999 (-)
LOC103027002 LOC108430032,LOC107705485,LOC107706665 coding downstream 85137 8085569 ~ 8115611 (-)
ccdc14 NA coding downstream 314883 7874926 ~ 7885865 (-)
nop58 nop58,LOC107705548,LOC107660025 coding upstream 20966 8230069 ~ 8239128 (-)
LOC103024641 fzd7,fzd7b,LOC108430030,LOC107660027,LOC107581350,LOC107706658 coding upstream 53081 8262184 ~ 8267343 (-)
cdk15 cdk15,LOC107706659,LOC107677597 coding upstream 92691 8301794 ~ 8355677 (-)
LOC103032246 NA coding upstream 251895 8460998 ~ 8478571 (-)
LOC103046974 itm2b,LOC108430053 coding upstream 315332 8524435 ~ 8536857 (-)
G89038 NA non-coding downstream 119158 8081373 ~ 8081590 (-)
G89036 NA non-coding downstream 120968 8079064 ~ 8079780 (-)
G89029 NA non-coding downstream 121691 8075884 ~ 8079057 (-)
G89035 NA non-coding downstream 131128 8069404 ~ 8069620 (-)
G88923 NA non-coding downstream 557970 7598802 ~ 7642778 (-)
G89067 NA non-coding upstream 33247 8242350 ~ 8244544 (-)
G89074 NA non-coding upstream 65559 8274662 ~ 8274864 (-)
G89135 als2 non-coding upstream 176329 8385432 ~ 8389028 (-)
G89134 als2 non-coding upstream 188437 8397540 ~ 8404379 (-)
G89141 NA non-coding upstream 210574 8419677 ~ 8422791 (-)
G88789 NA other downstream 958178 7241711 ~ 7242570 (-)
LOC103026131 LOC108431006 other downstream 985509 7103571 ~ 7215239 (-)
G88779 NA other downstream 1082622 7117661 ~ 7118126 (-)
vstm2a vstm2a other downstream 1468084 6676275 ~ 6732664 (-)
G88465 NA other downstream 3605423 4595058 ~ 4595325 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 1575520 9784623 ~ 9854099 (-)
G89690 zyx,LOC108428910 other upstream 1685722 9894825 ~ 9901700 (-)
G89708 gapdh,LOC107550818 other upstream 1752179 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 1802714 10011817 ~ 10042853 (-)
G89751 NA other upstream 2014417 10223520 ~ 10224663 (-)

Expression


Co-expression Network