G89134 (als2)


Basic Information

Item Value
gene id G89134
gene name als2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8397540 ~ 8404379 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU119894
cctgttcctactactagttactagtgtcgcataaaatgtgccttataatccaatgcaccttgtgtatgaaaatagaccagaaaatagacgtttactgataatgcgctttataatctggtgcaccttatagtgcgaaaaatatgctAATACTCACTTAAACTCAGTACTCACCTTAATGAGGTAGCGGCGAATTATGTGGTATTTCTCCAGCGTAACCGGCCCGACATGCTGAGGAATAAACTCCAAACTCTCCAGGGTTTTATTATGGGATCGACTCAGCAATTCAGgaCTGTCTCTATGCTGCCTCCTGTTGGTAGTCAGTGCTATAGCGATGTTGTCCCAGGCTGTGCTGGTGTCTCCCTGCCCTGGTGATTCACAGCCCAGTCTGCTCCAGCACTCTCCAAACACTGCCTTCCACTTCTCCTCTGAAGGCACTGCCAACCGACCCAGCTTAAGCGTGCGGTTCTTGTCCTTGTCTGAGTCGTAAAGGTTGGGTTTGTAGTAGGATCCAGAGATCTTTAATCCAGTGCCCCAGACTCCACTGAAGGACCCCTCAATGTAATCTCCGTTAGGCATGGTCAAAGTTCCCTTTCCGCTCAGAGTCCAGTCATCTGAAAAATCCCCTTCAAAGGTAGTGTCATCTTCTGACAGCAAAACACCAGTACCCATCATCTTGTTATTGCTAAAGGCCCCCTCGTAGTACAGACCAAACTGGGTGACGATAACTCCGTTCCCCTGCCTCAGATCCTCCTGCCATAATCCCATATACTTCTCCCCTCTTGTGATGTCATCAAAAACGCCATAGCCAGTCTTCTTGTCGTGCAGCCATTGGCCGATGAAGACACTGGGGGAGGTGGAGTTCAGCTTGCCGCTTCGCAGCATGCCGTGCCCATGGCGCATGTTATCCTGAAATGAGCCCTCATACAGTTCCCCTGTGGCATACctgaaGTTCCCAAAGCCGTGCATTTTGCCGTCCTTCCAATGGCCTTGGTAATGGTCACTTTTGTTAAGGTTCTTGTTAGGAACAATATAATCCCcatatCCGTCCTCAAGACCGTTCTTAAACGTCCCAGTGTACATCCTCCCATCTGGCCATTTTAACACAcccCTGCCATTGGGTTTGCCAGCCAGCCAGCGTCCCTCATACATGACTTCCTTCAGCCTGCTATCTTTGTAGAAGGTGTAAGAGGCGGTGCGAGAAATGGGTGGGTCTGCTCTCATCGCCGCCCCTGAAGTGTCCATCCCTGTTCCACTCAGCGCCTGCTCTACTGCCTGATTTATGGAGCGCAGCCACTTAGcctgaaatcatacaaaaacaGCTCTGCATGATAAATCTTATTTAATGATCACAGTCATATGGGGATATACTAATTAACCTTGACTTATGGGTTAATGTAAGCAAAGGATACAAAAAAAAGCCCAAGACAAGAACTGAATTTTTTCATAGGCTTGTTGTTAAGGAATAAATAGATTTTAAGCTGTACACATA

Function

symbol description
als2 Enables enzyme activator activity; protein homodimerization activity; and small GTPase binding activity. Contributes to guanyl-nucleotide exchange factor activity. Involved in several processes, including positive regulation of GTPase activity; positive regulation of protein kinase activity; and regulation of endosome size. Acts upstream of or within endosome organization; lysosomal transport; and protein homooligomerization. Located in several cellular components, including centrosome; dendrite; and early endosome. Part of protein-containing complex. Implicated in amyotrophic lateral sclerosis and amyotrophic lateral sclerosis type 2.

NR:

description
PREDICTED: alsin isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119894 True 1489 lncRNA 0.47 9 8397540 8404379

Neighbor

gene id symbol gene type direction distance location
cdk15 cdk15,LOC107706659,LOC107677597 coding downstream 41863 8301794 ~ 8355677 (-)
LOC103024641 fzd7,fzd7b,LOC108430030,LOC107660027,LOC107581350,LOC107706658 coding downstream 130197 8262184 ~ 8267343 (-)
nop58 nop58,LOC107705548,LOC107660025 coding downstream 158412 8230069 ~ 8239128 (-)
wdr12 wdr12,LOC107677607,LOC107706661 coding downstream 188437 8200748 ~ 8209103 (-)
ercc3 ercc3 coding downstream 198450 8166929 ~ 8199090 (-)
LOC103032246 NA coding upstream 56619 8460998 ~ 8478571 (-)
LOC103046974 itm2b,LOC108430053 coding upstream 120056 8524435 ~ 8536857 (-)
nudt15 LOC107705561,LOC107584789 coding upstream 137096 8541475 ~ 8544605 (-)
LOC103046152 LOC103046152,LOC108430057,LOC108272427,LOC107584782,LOC107705557,LOC107660037 coding upstream 290991 8695370 ~ 8733887 (-)
LOC103046449 NA coding upstream 334506 8738885 ~ 8793825 (-)
G89135 als2 non-coding downstream 8512 8385432 ~ 8389028 (-)
G89074 NA non-coding downstream 122676 8274662 ~ 8274864 (-)
G89067 NA non-coding downstream 152996 8242350 ~ 8244544 (-)
G89038 NA non-coding downstream 315950 8081373 ~ 8081590 (-)
G89036 NA non-coding downstream 317760 8079064 ~ 8079780 (-)
G89141 NA non-coding upstream 15298 8419677 ~ 8422791 (-)
G89169 NA non-coding upstream 68195 8472574 ~ 8473740 (-)
G89176 abi2 non-coding upstream 104508 8508887 ~ 8513839 (-)
G89179 NA non-coding upstream 133456 8537835 ~ 8538523 (-)
G89288 NA non-coding upstream 545589 8949968 ~ 8950288 (-)
G88789 NA other downstream 1154970 7241711 ~ 7242570 (-)
LOC103026131 LOC108431006 other downstream 1182301 7103571 ~ 7215239 (-)
G88779 NA other downstream 1279414 7117661 ~ 7118126 (-)
vstm2a vstm2a other downstream 1664876 6676275 ~ 6732664 (-)
G88465 NA other downstream 3802215 4595058 ~ 4595325 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 1380244 9784623 ~ 9854099 (-)
G89690 zyx,LOC108428910 other upstream 1490446 9894825 ~ 9901700 (-)
G89708 gapdh,LOC107550818 other upstream 1556903 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 1607438 10011817 ~ 10042853 (-)
G89751 NA other upstream 1819141 10223520 ~ 10224663 (-)

Expression


Co-expression Network