G89176 (abi2)


Basic Information

Item Value
gene id G89176
gene name abi2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8508887 ~ 8513839 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU119945
AAGCAACTAGTTTATGTAGAACACATGCATTCAGACACACTGGTATGAGCATGCTGTCACAcctgcatgcaaacacacacatcaataCAAAATGCAGATTCTCCTCTGGTTTAAACTGGTGACTTACTGGTCTCCTGAACCCGAGCAACAAAGCCCATCAGAGGCAGCTGGGGAGTGATCTGTAATATGGTAGGGGGAGGAGGGGCCATAGGGGCTAAAAGCCCAATCCCAgaagagagatggaggggaCATAAGCCAATATGGGGATGGAGAAAGGAATATGGATCCAAAACAATGAGaggaagaaaaacagaaagaaatcaGAATAGGCACTGGACTAGTTATGAATAAAGTGTTTTCCTTGATTGTGATGGTGGGTTACAGAAGCAGATactattttactgtattaagcaatacagtatatgtttattaaaaacccacCTTGATTCTGGTTGTAGTGTGGGCCCCCGTTCAGCTGGTTCTGGCTCACGTTTGGGTTAGCGTTCTGAGGTGCGTTATTTGGCTGATTGGTGACAGAGGAAGGCCTGCGATAGGGCAGAGAGCCTCCCACCGAGGGCGTGGTCTGTCGCGTCATTGGTCGGTTCATACTGTAGAACTGAGGACCATTTCCTGCTGGGAAAGCAGAAGGTGGGGCAGGGGTTGGCACAGCAATAGGCACACCCACGCTCCCACTGCCACTgttctctctgctgctgctccgacTGCTGGGGTGACTGCCTCCACTACTGCCActgctgagagacagagagagaaagagaaaaagaaagagagaaagggaaacaGAGAACATAACAGGTACAATCACACAgccattttttttgtctctgtaaCCAGGCACTCATTTACcaaaattatattttgataaaatatttCATTAGAAAGTTGATGTGGATTTCCTACTGATGGAGAGTTTGGATTTACCTGACCCCAGAAGaccaaattaaatgttattcagTCCAGAAGGAATAACTTATTAAAAGGGAATTCCACCACATtgtcaacaaataaaataactgtaTGAAATGCTCCAACCAGAGTtgttcacagtggtggtgatATGAACCATGTCTGAAGGTGGGAGACAAACTTTGCTCTTCATTTATAGATAACTGGATGaattttacttgttttactGGTTGTCAGTCGTTCATTTGGGCGCATTTTACCAATTAATAATATctatatgtatttttgtcttgctaTTATTAAACTActatttaaaaatcattgaACACAACAGAAAATAACAACAAAGCACATTCCATTTAAATAAGAATTGCAACTCAAATGAAGAATTTATGTCAGCAGGgctgttctaatcatagatttacaTTAGCAGTGCTGCTCAAGTCACACTTTGAGTGTG

Function

symbol description
abi2 Enables several functions, including SH3 domain binding activity; identical protein binding activity; and ubiquitin protein ligase binding activity. Contributes to small GTPase binding activity. Involved in Rac protein signal transduction; positive regulation of cellular component biogenesis; and zonula adherens assembly. Acts upstream of or within peptidyl-tyrosine phosphorylation. Located in several cellular components, including filopodium tip; lamellipodium; and nucleoplasm. Part of SCAR complex. Is active in adherens junction. Colocalizes with actin filament.

NR:

description
PREDICTED: abl interactor 2 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119945 True 1387 lncRNA 0.42 2 8508887 8513839

Neighbor

gene id symbol gene type direction distance location
LOC103032246 NA coding downstream 30316 8460998 ~ 8478571 (-)
cdk15 cdk15,LOC107706659,LOC107677597 coding downstream 153210 8301794 ~ 8355677 (-)
LOC103024641 fzd7,fzd7b,LOC108430030,LOC107660027,LOC107581350,LOC107706658 coding downstream 241544 8262184 ~ 8267343 (-)
nop58 nop58,LOC107705548,LOC107660025 coding downstream 269759 8230069 ~ 8239128 (-)
wdr12 wdr12,LOC107677607,LOC107706661 coding downstream 299784 8200748 ~ 8209103 (-)
LOC103046974 itm2b,LOC108430053 coding upstream 10596 8524435 ~ 8536857 (-)
nudt15 LOC107705561,LOC107584789 coding upstream 27636 8541475 ~ 8544605 (-)
LOC103046152 LOC103046152,LOC108430057,LOC108272427,LOC107584782,LOC107705557,LOC107660037 coding upstream 181531 8695370 ~ 8733887 (-)
LOC103046449 NA coding upstream 225046 8738885 ~ 8793825 (-)
LOC103045042 LOC108242159 coding upstream 298565 8812404 ~ 8895438 (-)
G89169 NA non-coding downstream 35147 8472574 ~ 8473740 (-)
G89141 NA non-coding downstream 86096 8419677 ~ 8422791 (-)
G89134 als2 non-coding downstream 104508 8397540 ~ 8404379 (-)
G89135 als2 non-coding downstream 119859 8385432 ~ 8389028 (-)
G89074 NA non-coding downstream 234023 8274662 ~ 8274864 (-)
G89179 NA non-coding upstream 23996 8537835 ~ 8538523 (-)
G89288 NA non-coding upstream 436129 8949968 ~ 8950288 (-)
G89299 NA non-coding upstream 494264 9008103 ~ 9018428 (-)
G89322 NA non-coding upstream 567443 9081282 ~ 9082106 (-)
G89328 NA non-coding upstream 577784 9091623 ~ 9130120 (-)
G88789 NA other downstream 1266317 7241711 ~ 7242570 (-)
LOC103026131 LOC108431006 other downstream 1293648 7103571 ~ 7215239 (-)
G88779 NA other downstream 1390761 7117661 ~ 7118126 (-)
vstm2a vstm2a other downstream 1776223 6676275 ~ 6732664 (-)
G88465 NA other downstream 3913562 4595058 ~ 4595325 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 1270784 9784623 ~ 9854099 (-)
G89690 zyx,LOC108428910 other upstream 1380986 9894825 ~ 9901700 (-)
G89708 gapdh,LOC107550818 other upstream 1447443 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 1497978 10011817 ~ 10042853 (-)
G89751 NA other upstream 1709681 10223520 ~ 10224663 (-)

Expression


Co-expression Network