LOC103046152 (LOC103046152,LOC108430057,LOC108272427,LOC107584782,LOC107705557,LOC107660037)


Basic Information

Item Value
gene id LOC103046152
gene name LOC103046152,LOC108430057,LOC108272427,LOC107584782,LOC107705557,LOC107660037
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8695370 ~ 8733887 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248856.3
ATAGCGCCTCACTTCAGTACATGGGTCAGCAGCCAGCTGCGAGCATCAAACCACAACAACAGCAGGCTGGAGCAGCCAGAAGAGCGCAAGCTTGCCAGGACTGAGGACAGAGGAACAGTGAACCAGAGCCAAACGTCTCAGCAGTGCAGCTCTCGACTTCAGAAAGTTTGAGCTTGAAGTTTCAGGATCCTGCCGACTACGCCAATGACTACACCACTCTACAGCACCTGAGATTAAGCTATTCATCTTCAAGCTCTTAACCTGCACCATGCTTTATTAATGACCGCGGGGACTGACGCACTGCAGCGATGACAGATTCACACAGATCATAGCAGACAAGACAAGCAATCCTCTCTGAATGATTGAGGCATCATCAGAACTGGAAATGCACATGGAAGCTTGAGTACTAGACATGGTTATGAGGAGGGTGGTTCTTTCCTTGAAGTCCCCCAGAAGTGAATGAGTGTACAGTGACCTTAAATGTCCTGGTGCTGCAGTAGAAATGATTGACAGGGTGGGTGTGGCCTTGGGTATAAGGAATGGAATCTTTGAATGGATTTTATCAGTTATGCTATGGCTAAACAGCAACTGAGCATGACTGGACGTTAAGTGGCGAACAGACTGCTGCAACTGGAGTTGCTGCAGCAATGTTCTTTAAATAAGTGCACGTGATTGGCCTGTGGGCTGACCACATGTGATTGGCAGACAAGCCAGACAGTGGCGAGATGCCCTCAAAGGTGTCCTGTCTGTACCTACTCACTGTGCTTTGCTGGGCCAGCGCTCTGTGGTACCTCAGCGGCTCCCGGCCTTCCAGCACCTACGTAGGCCAGATGTCCGTGCCGGTCCGCAAGCAGCCGCCAAGACTCTTAAAAAATGTGACCTTTAGCAACATCCGCACTCGCACCCTTAACCCGCACAGCTTCCGCTTCCTCATCAACGAGCCAAGCAAATGCGAGGGTGACCCACCCTTCCTTCTTATCCTGATCAGCACCAACCACAAAGAGTTTGACGCTCGGCAGGCGATCCGGGAGACGTGGGGTGAGGAGAACATGTACAGCGACATTCGCATCGTTACACTCTTTCTTCTTGGTCACAATTCCGAGCCTGTACTGAACCAGATGGTGGAGCAGGAGAGCCAGATCTTCCATGACATCATTGTAGAGGACTTTGAGGATTCCTACCACAACCTAACCTTGAAGACCATGATGGGAATGCGCTGGGTATCCTCCTTCTGTCCAAACGCCCACTATGTCATGAAGACAGACAGCGACATCTTTGTCAACATGGACAATCTGGTTCTGAACCTTCTAAGACCTAACGCTAAGCCCAGGCAGCGCTTCTTCACAGGGCATGTCATAAATGGAGGGCCCATCCGAGACACTCGCAGCAAGTGGTACATGTCTAGAGAGATGTACCCTGAGAGCAAGTACCCCCCGTTCTGTTCTGGGACTGGATACGTGTTCTCAGGGGACATGGCTGAGCTGATCTTTAAGACTTCCCTGCACACTCGCCTCATTCACCTGGAGGACGTGTATGTGGGCTTGTGCTTGCGCAAGCTGGGGATCCACCCCATCCAGAACAGTGGCTTCAACCACTGGAAGATGAGCTACAGCCTCTGCCGCTATCGCAGGGTGGTCACTGTACACCAAATCTCACCAGAGGAGATGCACAGGATATGGAACGACATGTCTACCAAAAAGCATCTCAAGTGCTAACAAGGACCAGACATCATGGTCTAGCATTGTGTTGTTTGGACGTGGGAGAACAAACATGCTTTAAATTGCTGTACATGTTTTCGCTGGTCTGAAAACTTTTGTTCAAGTGGTTCAGTTTAGTTGCAGAACCAAGAATCCTCATCTGTGTTCTATGAAAGACAAGTACTGATGGTGTTGTGGAACCAACAGTGGTTCCATTAGAGATTCTTTATGTATAAACATAAGCAAGTATACAGACCCAAAAGACCGTCTCCTCTTAGATTAACATAATCCCATTGTTTGTAATATGTAAGGCAAAACTATTATCCTAGATCAGCACCCTGAGCCATGCTTCAAAGTTTTACTGCACAATTCTGGTCAAAAATGTGGGGAACTACTTTGTTCACTTGTTCAGAAAGGAGGGTACAGATTTTCAAAAAATCcagtaaatgaattaatatttggtTTGACAGAGAAGCTACTTGCACAGTCTTGAGCTTTTTCCAAATGTAGAGTCACTGTCTGTGTTCCAATATCTAGGTTGCATTTCTCGGCTGGGACACCTTCGTGCAGTGCAGAGAAATTAGGCCACATTTGGAGGACCAACTGTTTGTCATAGAACTTCTAGAGAGGAGAATCACCACTTGAGAACATCTTCTCAAGTAGAGTTTGTcagacactagagggcgctcccaagtgagtttttttttttgagaaatacctaattttacataattttaaagGTATCCTGGACAATTAGTTAGACactattttaaattagaataatttattaaaaatgtatgaattcaTTTTAGGCTCCCTCTAGTGTTTTGCAGTAATTTTCAGATATAATGGTGGAAATAGGAAGTGGGTAGGCTGTCCATTAACAGttctgtgaaaataaaaaaaaatgtcaaatgaTGGAAagcaaaatttttttttgctatatttcGAAATGAATCATAAATGAATATCTGATGTGACCAGAAAAGCATAATTAGACTGTTCTATAAATGTTATCAACCGACTGTTGACAGGAGCTCTTCATAGGACAATCCTACAGAAAATTGCAGCCTAGATATTGGAACTGTTAAAAACAGTATTGACTTGCATGCCACATCTGTGCATTCATACATTTTCCAATCCACAACTGTGCAAATGGGTTAcatgaagaaaataaacaccAGTAAGTCAGAAGAAACCCTAAGATCAGCTCTGTCAGGTTAACAGCAGCTTGGTTTCTCTTGGATGCGCTGAGATGCGTGAAGGTAATCTGTTTTTAGGAGTCTCCTGGGAGTGTGATAAAAAACTGTGTGCAGCAGCCTGTGTAGCTAAAAGAGCCTGCTACACCACATACGCTACGCAAACAGGATGTTTAGATtaatctaaaacttttgcaACATTTACATgtagttctttttcttctaaaaCGGTAAGTAAACAATAAGACTCATTTAATAATATACGGTCTCAGTGTATCCCAGATATAACCtagtttaataacacacagCAGGTagaagtggcccaaatctggccttttttgtcatttgtgacacatatttaaatgcaatttttgtTGTAATGTGAACAGCACACTGAATCTAATATTTTCAATTCTGGATCAAATTGGATTACCTGAAATGTGATACATATCCATGCAGAATTCATGCGCGGATTTTAGGTCAAGGAGAAGGACCTTATACATATTTGGACATAAAAGGacaataaaatgcttaaaaatgaaatttaaagaaaggacacaaaacaaataattatgaGCACGGCTGTAAGAAAAGAAGATTCTGGCAAGGATGAAACTTAAACTTAAGCCTTATCTGgatggaattagtttctcagttggatgtctgtgaaaaatattgaaCTATTCTCttagtgataaaaaaacagatgaaaaaacaggaggaccagtgagttcttTGGCTgttttggtcacatgacattgcattGTCACATGATATCATTTTTGCACACAGAGCACGATGGCGGGGTCTAAGCGCTCTAAAAGATACTGGAGCAGAGAAGAGACAATGACTCAAATTTCAGCAACAAttcaagtacagtttacaaccacaaagtgtgggagttcagtagctcctccatttccactcactgttgtgttttttttc

Function

NR:

description
beta-1,3-galactosyltransferase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248856.3 True 3841 mRNA 0.43 2 8695370 8733887

Neighbor

gene id symbol gene type direction distance location
nudt15 LOC107705561,LOC107584789 coding downstream 150765 8541475 ~ 8544605 (-)
LOC103046974 itm2b,LOC108430053 coding downstream 158513 8524435 ~ 8536857 (-)
LOC103032246 NA coding downstream 216799 8460998 ~ 8478571 (-)
cdk15 cdk15,LOC107706659,LOC107677597 coding downstream 339693 8301794 ~ 8355677 (-)
LOC103024641 fzd7,fzd7b,LOC108430030,LOC107660027,LOC107581350,LOC107706658 coding downstream 428027 8262184 ~ 8267343 (-)
LOC103046449 NA coding upstream 4998 8738885 ~ 8793825 (-)
LOC103045042 LOC108242159 coding upstream 78517 8812404 ~ 8895438 (-)
LOC103031295 NA coding upstream 278559 9012446 ~ 9015707 (-)
LOC103038042 cpq,pgcp coding upstream 346526 9080413 ~ 9100465 (-)
LOC103040550 NA coding upstream 374876 9108763 ~ 9144163 (-)
G89179 NA non-coding downstream 156847 8537835 ~ 8538523 (-)
G89176 abi2 non-coding downstream 181531 8508887 ~ 8513839 (-)
G89169 NA non-coding downstream 221630 8472574 ~ 8473740 (-)
G89141 NA non-coding downstream 272579 8419677 ~ 8422791 (-)
G89134 als2 non-coding downstream 290991 8397540 ~ 8404379 (-)
G89288 NA non-coding upstream 216081 8949968 ~ 8950288 (-)
G89299 NA non-coding upstream 274216 9008103 ~ 9018428 (-)
G89322 NA non-coding upstream 347395 9081282 ~ 9082106 (-)
G89328 NA non-coding upstream 357736 9091623 ~ 9130120 (-)
G89331 NA non-coding upstream 398296 9132183 ~ 9138868 (-)
G88789 NA other downstream 1452800 7241711 ~ 7242570 (-)
LOC103026131 LOC108431006 other downstream 1480131 7103571 ~ 7215239 (-)
G88779 NA other downstream 1577244 7117661 ~ 7118126 (-)
vstm2a vstm2a other downstream 1962706 6676275 ~ 6732664 (-)
G88465 NA other downstream 4100045 4595058 ~ 4595325 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 1050736 9784623 ~ 9854099 (-)
G89690 zyx,LOC108428910 other upstream 1160938 9894825 ~ 9901700 (-)
G89708 gapdh,LOC107550818 other upstream 1227395 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 1277930 10011817 ~ 10042853 (-)
G89751 NA other upstream 1489633 10223520 ~ 10224663 (-)

Expression


Co-expression Network