RNA id: XM_007248856.3


Basic Information

Item Value
RNA id XM_007248856.3
length 3841
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC103046152
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8695370 ~ 8733887 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATAGCGCCTCACTTCAGTACATGGGTCAGCAGCCAGCTGCGAGCATCAAACCACAACAACAGCAGGCTGGAGCAGCCAGAAGAGCGCAAGCTTGCCAGGACTGAGGACAGAGGAACAGTGAACCAGAGCCAAACGTCTCAGCAGTGCAGCTCTCGACTTCAGAAAGTTTGAGCTTGAAGTTTCAGGATCCTGCCGACTACGCCAATGACTACACCACTCTACAGCACCTGAGATTAAGCTATTCATCTTCAAGCTCTTAACCTGCACCATGCTTTATTAATGACCGCGGGGACTGACGCACTGCAGCGATGACAGATTCACACAGATCATAGCAGACAAGACAAGCAATCCTCTCTGAATGATTGAGGCATCATCAGAACTGGAAATGCACATGGAAGCTTGAGTACTAGACATGGTTATGAGGAGGGTGGTTCTTTCCTTGAAGTCCCCCAGAAGTGAATGAGTGTACAGTGACCTTAAATGTCCTGGTGCTGCAGTAGAAATGATTGACAGGGTGGGTGTGGCCTTGGGTATAAGGAATGGAATCTTTGAATGGATTTTATCAGTTATGCTATGGCTAAACAGCAACTGAGCATGACTGGACGTTAAGTGGCGAACAGACTGCTGCAACTGGAGTTGCTGCAGCAATGTTCTTTAAATAAGTGCACGTGATTGGCCTGTGGGCTGACCACATGTGATTGGCAGACAAGCCAGACAGTGGCGAGATGCCCTCAAAGGTGTCCTGTCTGTACCTACTCACTGTGCTTTGCTGGGCCAGCGCTCTGTGGTACCTCAGCGGCTCCCGGCCTTCCAGCACCTACGTAGGCCAGATGTCCGTGCCGGTCCGCAAGCAGCCGCCAAGACTCTTAAAAAATGTGACCTTTAGCAACATCCGCACTCGCACCCTTAACCCGCACAGCTTCCGCTTCCTCATCAACGAGCCAAGCAAATGCGAGGGTGACCCACCCTTCCTTCTTATCCTGATCAGCACCAACCACAAAGAGTTTGACGCTCGGCAGGCGATCCGGGAGACGTGGGGTGAGGAGAACATGTACAGCGACATTCGCATCGTTACACTCTTTCTTCTTGGTCACAATTCCGAGCCTGTACTGAACCAGATGGTGGAGCAGGAGAGCCAGATCTTCCATGACATCATTGTAGAGGACTTTGAGGATTCCTACCACAACCTAACCTTGAAGACCATGATGGGAATGCGCTGGGTATCCTCCTTCTGTCCAAACGCCCACTATGTCATGAAGACAGACAGCGACATCTTTGTCAACATGGACAATCTGGTTCTGAACCTTCTAAGACCTAACGCTAAGCCCAGGCAGCGCTTCTTCACAGGGCATGTCATAAATGGAGGGCCCATCCGAGACACTCGCAGCAAGTGGTACATGTCTAGAGAGATGTACCCTGAGAGCAAGTACCCCCCGTTCTGTTCTGGGACTGGATACGTGTTCTCAGGGGACATGGCTGAGCTGATCTTTAAGACTTCCCTGCACACTCGCCTCATTCACCTGGAGGACGTGTATGTGGGCTTGTGCTTGCGCAAGCTGGGGATCCACCCCATCCAGAACAGTGGCTTCAACCACTGGAAGATGAGCTACAGCCTCTGCCGCTATCGCAGGGTGGTCACTGTACACCAAATCTCACCAGAGGAGATGCACAGGATATGGAACGACATGTCTACCAAAAAGCATCTCAAGTGCTAACAAGGACCAGACATCATGGTCTAGCATTGTGTTGTTTGGACGTGGGAGAACAAACATGCTTTAAATTGCTGTACATGTTTTCGCTGGTCTGAAAACTTTTGTTCAAGTGGTTCAGTTTAGTTGCAGAACCAAGAATCCTCATCTGTGTTCTATGAAAGACAAGTACTGATGGTGTTGTGGAACCAACAGTGGTTCCATTAGAGATTCTTTATGTATAAACATAAGCAAGTATACAGACCCAAAAGACCGTCTCCTCTTAGATTAACATAATCCCATTGTTTGTAATATGTAAGGCAAAACTATTATCCTAGATCAGCACCCTGAGCCATGCTTCAAAGTTTTACTGCACAATTCTGGTCAAAAATGTGGGGAACTACTTTGTTCACTTGTTCAGAAAGGAGGGTACAGATTTTCAAAAAATCcagtaaatgaattaatatttggtTTGACAGAGAAGCTACTTGCACAGTCTTGAGCTTTTTCCAAATGTAGAGTCACTGTCTGTGTTCCAATATCTAGGTTGCATTTCTCGGCTGGGACACCTTCGTGCAGTGCAGAGAAATTAGGCCACATTTGGAGGACCAACTGTTTGTCATAGAACTTCTAGAGAGGAGAATCACCACTTGAGAACATCTTCTCAAGTAGAGTTTGTcagacactagagggcgctcccaagtgagtttttttttttgagaaatacctaattttacataattttaaagGTATCCTGGACAATTAGTTAGACactattttaaattagaataatttattaaaaatgtatgaattcaTTTTAGGCTCCCTCTAGTGTTTTGCAGTAATTTTCAGATATAATGGTGGAAATAGGAAGTGGGTAGGCTGTCCATTAACAGttctgtgaaaataaaaaaaaatgtcaaatgaTGGAAagcaaaatttttttttgctatatttcGAAATGAATCATAAATGAATATCTGATGTGACCAGAAAAGCATAATTAGACTGTTCTATAAATGTTATCAACCGACTGTTGACAGGAGCTCTTCATAGGACAATCCTACAGAAAATTGCAGCCTAGATATTGGAACTGTTAAAAACAGTATTGACTTGCATGCCACATCTGTGCATTCATACATTTTCCAATCCACAACTGTGCAAATGGGTTAcatgaagaaaataaacaccAGTAAGTCAGAAGAAACCCTAAGATCAGCTCTGTCAGGTTAACAGCAGCTTGGTTTCTCTTGGATGCGCTGAGATGCGTGAAGGTAATCTGTTTTTAGGAGTCTCCTGGGAGTGTGATAAAAAACTGTGTGCAGCAGCCTGTGTAGCTAAAAGAGCCTGCTACACCACATACGCTACGCAAACAGGATGTTTAGATtaatctaaaacttttgcaACATTTACATgtagttctttttcttctaaaaCGGTAAGTAAACAATAAGACTCATTTAATAATATACGGTCTCAGTGTATCCCAGATATAACCtagtttaataacacacagCAGGTagaagtggcccaaatctggccttttttgtcatttgtgacacatatttaaatgcaatttttgtTGTAATGTGAACAGCACACTGAATCTAATATTTTCAATTCTGGATCAAATTGGATTACCTGAAATGTGATACATATCCATGCAGAATTCATGCGCGGATTTTAGGTCAAGGAGAAGGACCTTATACATATTTGGACATAAAAGGacaataaaatgcttaaaaatgaaatttaaagaaaggacacaaaacaaataattatgaGCACGGCTGTAAGAAAAGAAGATTCTGGCAAGGATGAAACTTAAACTTAAGCCTTATCTGgatggaattagtttctcagttggatgtctgtgaaaaatattgaaCTATTCTCttagtgataaaaaaacagatgaaaaaacaggaggaccagtgagttcttTGGCTgttttggtcacatgacattgcattGTCACATGATATCATTTTTGCACACAGAGCACGATGGCGGGGTCTAAGCGCTCTAAAAGATACTGGAGCAGAGAAGAGACAATGACTCAAATTTCAGCAACAAttcaagtacagtttacaaccacaaagtgtgggagttcagtagctcctccatttccactcactgttgtgttttttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119948 lncRNA downstream 156847 8537835 ~ 8538523 (-) True G89179
TU119945 lncRNA downstream 181531 8508887 ~ 8513839 (-) True G89176
TU119938 lncRNA downstream 221630 8472574 ~ 8473740 (-) True G89169
TU119904 lncRNA downstream 272579 8419677 ~ 8422791 (-) True G89141
TU119894 lncRNA downstream 290991 8397540 ~ 8404379 (-) True G89134
TU120087 lncRNA upstream 216081 8949968 ~ 8950288 (-) True G89288
TU120102 lncRNA upstream 274216 9008103 ~ 9018428 (-) True G89299
TU120130 lncRNA upstream 347395 9081282 ~ 9082106 (-) True G89322
TU120139 lncRNA upstream 357736 9091623 ~ 9130120 (-) True G89328
TU120142 lncRNA upstream 398296 9132183 ~ 9138868 (-) True G89331
XM_007248861.3 mRNA downstream 150765 8541475 ~ 8544605 (-) True nudt15
XM_007248859.3 mRNA downstream 158513 8524435 ~ 8536857 (-) True LOC103046974
XM_007248860.3 mRNA downstream 158514 8524435 ~ 8536856 (-) False LOC103046974
XM_007248899.2 mRNA downstream 216799 8460998 ~ 8478571 (-) True LOC103032246
XM_007248874.3 mRNA downstream 339693 8301794 ~ 8355677 (-) False cdk15
XM_022673472.1 mRNA upstream 4998 8738885 ~ 8793825 (-) False LOC103046449
XM_007248857.3 mRNA upstream 4998 8738885 ~ 8793825 (-) True LOC103046449
XM_007248858.3 mRNA upstream 4998 8738885 ~ 8762790 (-) False LOC103046449
XM_015605714.2 mRNA upstream 78517 8812404 ~ 8895438 (-) True LOC103045042
XM_022673340.1 mRNA upstream 278559 9012446 ~ 9015707 (-) False LOC103031295
TU119448 other downstream 1452800 7241711 ~ 7242570 (-) True G88789
TU119427 other downstream 1577244 7117661 ~ 7118126 (-) True G88779
TU119041 other downstream 4100045 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 4129166 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 5003906 3606470 ~ 3691464 (-) False lyrm4
TU120441 other upstream 1068884 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 1160938 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 1227395 9961282 ~ 9964606 (-) True G89708
TU120687 other upstream 1305670 10039557 ~ 10042853 (-) False LOC103025178
TU120738 other upstream 1489633 10223520 ~ 10224663 (-) True G89751

Expression Profile