RNA id: XM_007248861.3


Basic Information

Item Value
RNA id XM_007248861.3
length 861
RNA type mRNA
GC content 0.47
exon number 4
gene id nudt15
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8541475 ~ 8544605 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCTCAGGCTCTCTCAAGAATTTATTGGTCGTTTTCTAATATAACGGGGGAATCAGAAGAAAAGAACAGCCGTGCGTGTGAACGCACCCTTACGCCATTGGCGCATAGGGCCATATTTCTGAATTCAGCCAGGGTCTGACTTTACGCGATTAAATGTATTGCTAAAATAAGTGCCAGAGAAGTCCTGCAGTGAAGATTTCCCCTTTATACCCCAGCTTAATACTGACCTAATTCCACTATAAACATGTTTCCAACCAGAAGACTCCTATGTGAAGGAACACATCAGTTACCTAAAATCATCAACCCCATGCGGCCGGGGGTTGGCATAGGCGTGCTGGTCACTGATGCTGCTCAGCCAGGATGTGTGCTGTTAGGAAAAAGGAGGGGCCAGGTTGGAAAAGGTACCTATCAGTTACCTGGTGGTCACATTGAGTTTGGAGAATCATGGGCGGAGTGTGCCCAGAGAGAGGTGATGGAGGAGGCCGGCCTGCAGCTGAACAACATCCGTTATGCCTCTGTGGTAAACTCCATCAAATTAGAGGAAAACTATCACTATGTTACAATCTACATGCAAGGAGAAGTGGACAGGGCCTTCTCGTCTGAGCCTGTAAATGTGGAGCCAGAGAAAAATGAAGGGTGGACATGGACATTGTGGGAGGACTTTCCACCAGAGGAGCAACTGTTCTGGCCTCTGGCGAATTTGAGACAGCAGGGATACCATCCATTCACAAACAGTAGCAaagatttaataaaatgaagAGAATGTGTTTACTCCACTGTGAGAAGATCTACTTTCTGAATaaaccctgctgctgctgctttctctgaCTGCAACAACTGGAATAAAAGAGGCATCTGAA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K03574 mutT, NUDT15, MTH2; 8-oxo-dGTP diphosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119948 lncRNA downstream 2952 8537835 ~ 8538523 (-) True G89179
TU119945 lncRNA downstream 27636 8508887 ~ 8513839 (-) True G89176
TU119938 lncRNA downstream 67735 8472574 ~ 8473740 (-) True G89169
TU119904 lncRNA downstream 118684 8419677 ~ 8422791 (-) True G89141
TU119894 lncRNA downstream 137096 8397540 ~ 8404379 (-) True G89134
TU120087 lncRNA upstream 405363 8949968 ~ 8950288 (-) True G89288
TU120102 lncRNA upstream 463498 9008103 ~ 9018428 (-) True G89299
TU120130 lncRNA upstream 536677 9081282 ~ 9082106 (-) True G89322
TU120139 lncRNA upstream 547018 9091623 ~ 9130120 (-) True G89328
TU120142 lncRNA upstream 587578 9132183 ~ 9138868 (-) True G89331
XM_007248859.3 mRNA downstream 4618 8524435 ~ 8536857 (-) True LOC103046974
XM_007248860.3 mRNA downstream 4619 8524435 ~ 8536856 (-) False LOC103046974
XM_007248899.2 mRNA downstream 62904 8460998 ~ 8478571 (-) True LOC103032246
XM_007248874.3 mRNA downstream 185798 8301794 ~ 8355677 (-) False cdk15
XM_022673458.1 mRNA downstream 209397 8301794 ~ 8332078 (-) True cdk15
XM_007248856.3 mRNA upstream 150765 8695370 ~ 8733887 (-) True LOC103046152
XM_022673472.1 mRNA upstream 194280 8738885 ~ 8793825 (-) False LOC103046449
XM_007248857.3 mRNA upstream 194280 8738885 ~ 8793825 (-) True LOC103046449
XM_007248858.3 mRNA upstream 194280 8738885 ~ 8762790 (-) False LOC103046449
XM_015605714.2 mRNA upstream 267799 8812404 ~ 8895438 (-) True LOC103045042
TU119448 other downstream 1298905 7241711 ~ 7242570 (-) True G88789
TU119427 other downstream 1423349 7117661 ~ 7118126 (-) True G88779
TU119041 other downstream 3946150 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 3975271 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 4850011 3606470 ~ 3691464 (-) False lyrm4
TU120441 other upstream 1258166 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 1350220 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 1416677 9961282 ~ 9964606 (-) True G89708
TU120687 other upstream 1494952 10039557 ~ 10042853 (-) False LOC103025178
TU120738 other upstream 1678915 10223520 ~ 10224663 (-) True G89751

Expression Profile