RNA id: XM_022673458.1


Basic Information

Item Value
RNA id XM_022673458.1
length 2294
RNA type mRNA
GC content 0.49
exon number 13
gene id cdk15
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8301794 ~ 8355677 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcaaatacagCGTCTTTCAGTGTCAGACTctgcttttattctttttctctctctttctctcacacactggcTGCTCCTGTCTTCTCATTAGTTTCTCCGATCTGCTTCAATAGACATATTTGTTCCCATTAACACTGAGAACatggctgtttttgttttagtctTACAGCCGAGAGATGGTCATAAGACCAGGCCTCTgcgcagaacacacacacacacacacacactcctgcggGTCATATGAGCGACAGGGCtgacccacacagagagagtgtgtgagagagaaagagaaagagtgtagTAATGGAGGACTTGTTCTGGAGGGTCCGGCTCTGGGGGTCTCTGTGTGTGGgtcagtgctgctggtgttgtggGCGAGAAAAGGAGGTCAGGAATGGTCAGGAGAGAGTGGAGGAGACTAGCAGTGTAGGGGCAGAGGGGCAGGAGGAGTTGGAAATGGAGGAGAGGCCTTCGAAGAGCTGGAGTGTGTCGTCCCTGCCGGTCGCTgagTTGGGTGAACTGGACGGGGTGGAGACTCCTCAGCCTCACTGGTTCCACACTCTGCAGGTGCGCAGGCTACGGGTGCAGAGAGGCCGCAGCAACAGCGACCCACTGGGGGGAAAAAGCTTCCAGCAGGAATTTCAGTGGAACACGGGGCTGCAGTTTGGAACTGCCACTTCCTACCTGAACCTGGAGAAACTAGGAGAAGGAACATACGCCACCGTTTACAAAGGAATAAGCAGGATTAACGGCCACTTGGTGGCACTAAAGGTGATCCGCATGAAGACTGAAGAAGGAGTTCCATTCACTGCAATCAGAGAGgcCTCTCTGTTAAAAGGCCTGAAGCATGCTAACATTGTGCTGCTCCATGACATCATCCACACTCGCGAGTCTCTCACCTTCGTCTTTGAGTATGTGcAAACAGACTTGTCTCAGTATATGATGCAGCACCCGGGAGGACTGCACTCCTACAATGTTCGAatCTTTATGTTCCAGCTGTTGCGAGGTCTGTCATATATCCACAGTAGGAGGATCCTGCATCGAGATCTGAAGCCTCAGAACCTGCTCATCAGCTACCTGGGAGAACTCAAACTGGCAGACTTTGGCCTGGCTAGGTCCAAGTCCATCCCTTGCCAAACATATTCAGCAGAAGTTGTGACTCTCTGGTACAGACCACCTGATGTTCTACTGGGTTCCACAGACTACTCCACAGCACTAGACATTTGGGGTGCCGGCTGCATTTTTATTGAGATGCTGCAGGGAGCGCCAGCGTTCCCTGGTGTAGCTGATGTCTTTGAGCAGTTGCTGAAGATTTGGACAGTTCTGGGGGTGCCCACGGAAGAAAGCTGGCCAGGTGTGAGTGAGCTACCCAACTATAAACCGGAATGGTTCCTGCCCTGCAAAGCCCAGCAATTCAGAGATGTCTGGAAAAGACTTGCACAGTTGCCCTATAAGACAGAAGACCTGGCCCAGCAGATGTTGATGATGGTGCCCAAAGACAGGATCTCGGCCCAGGATGCACTGCAGCACCCCTACTTCAGTACCCTCCCACCCCCAGTGATGCAGCTCCGGGACAcTGTATCGATATTTAAAGTGCCTGGTGTGAGGCTGGAAGCAGAAGCGAGGGACATTTTCAGCCCCAGCAGGCGGACAAAACCCTCCCTGGTTCCCCTGGGGAAGTGCTGGTGAGAGGCTTCCGCTGTCCCGTGTCGACCACACGCAACATCGcaggacagaaagagaaaaaaacaaactgtaCACTTCACACAGCATGGCAGTCGTTGATTTATGTGTTGTCTTATTGTGGAGCCCTCTTACCACCATCACCAGTAACAAGCGTGATCATTACTCCTTAAAGGAACGGCGATCCAGTGTCTCTTCTCCAGTGACTGCGTGTGGTCAGGGTTTTATGCTTTCCTGTGGGTCAGTGGGATGGAGTGGAGGAGATGGCAACGTTGGAGGTACTGTAACATGTGTTGGCGGAATCCTATGGTGACTTTATGCAAAATGCACTTATCATATTTGGTACAGTATTTAAGTGTGATTGTACTTGATTTAAATGTGCACATCATTTCCACAAGAAGTACAATATGAATTATAAATCAACTGAATTTTCTTTTAGTGATAACTTAGATAATGCAACAcatttgtaatgtgtaatgaTGTACACATTTGAAATTTGTAGGGCTTGAATGTAATGGATGAGAGAGTTTTggtgataataaataataagagaaagatatatacagctctggaaaaaaataagagaccacttaaaaatgatgcgtttctt

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function

KEGG:

id description
K15594 CDK15, PFTK2; cyclin-dependent kinase 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119813 lncRNA downstream 26930 8274662 ~ 8274864 (-) True G89074
TU119799 lncRNA downstream 57250 8242350 ~ 8244544 (-) False G89067
TU119798 lncRNA downstream 58474 8242350 ~ 8243320 (-) True G89067
TU119753 lncRNA downstream 220204 8081373 ~ 8081590 (-) True G89038
TU119750 lncRNA downstream 222014 8079064 ~ 8079780 (-) True G89036
TU119896 lncRNA upstream 53354 8385432 ~ 8389028 (-) True G89135
TU119894 lncRNA upstream 65462 8397540 ~ 8404379 (-) True G89134
TU119904 lncRNA upstream 87599 8419677 ~ 8422791 (-) True G89141
TU119938 lncRNA upstream 140496 8472574 ~ 8473740 (-) True G89169
TU119945 lncRNA upstream 176809 8508887 ~ 8513839 (-) True G89176
XM_007248875.3 mRNA downstream 34451 8262184 ~ 8267343 (-) True LOC103024641
XM_007248877.3 mRNA downstream 62666 8230069 ~ 8239128 (-) True nop58
XM_007248879.3 mRNA downstream 92691 8200748 ~ 8209103 (-) True wdr12
XM_022673457.1 mRNA downstream 102704 8166929 ~ 8199090 (-) True ercc3
XM_007248881.3 mRNA downstream 143352 8149469 ~ 8158442 (-) True LOC103026207
XM_007248899.2 mRNA upstream 128920 8460998 ~ 8478571 (-) True LOC103032246
XM_007248859.3 mRNA upstream 192357 8524435 ~ 8536857 (-) True LOC103046974
XM_007248860.3 mRNA upstream 192357 8524435 ~ 8536856 (-) False LOC103046974
XM_007248861.3 mRNA upstream 209397 8541475 ~ 8544605 (-) True nudt15
XM_007248856.3 mRNA upstream 363292 8695370 ~ 8733887 (-) True LOC103046152
TU119448 other downstream 1059224 7241711 ~ 7242570 (-) True G88789
TU119427 other downstream 1183668 7117661 ~ 7118126 (-) True G88779
TU119041 other downstream 3706469 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 3735590 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 4610330 3606470 ~ 3691464 (-) False lyrm4
TU120441 other upstream 1470693 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 1562747 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 1629204 9961282 ~ 9964606 (-) True G89708
TU120687 other upstream 1707479 10039557 ~ 10042853 (-) False LOC103025178
TU120738 other upstream 1891442 10223520 ~ 10224663 (-) True G89751

Expression Profile