RNA id: XM_007248875.3


Basic Information

Item Value
RNA id XM_007248875.3
length 2909
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC103024641
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8262184 ~ 8267343 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCCGCGGAGAGACGCGCCGCAGAGCTTGAATGGAGGGGCGTCTGGAAACCGTCTGATCAGCGCCAGGGTAGTGTGGAGCGTCTGTGTAAACTTTAGTGCGGTAAAGTTAGTAAATCTGGAAGAAGCGGCGGCTGGAGGCGGTTAATCTGCGGCGTGCGCTGCCTGAGGACGGACGGGGACGGGTTTTCGTCGACGCCTGCGATGAAATGTACGGAGGATTCGCGAAAACGGGCCACGAGTGCGTTACTACCTGAGTGAAGAGCCGCCGCCGCCGCGCTGGACGTTGGGTTTGAGAAGTAACCGAAGCACGAGGGGGTCGGCGAGCTGCTCCAGGCGCACCCGACCATCGAACACACGGACCTCTGCTCCTAACGCCTCTCTATATCGGATCACCTTCAGTGCTGTCCATGATGGCGGTTTGGAGAGCCAGAGCCAGTTCTTTTAGCCAGACTGTACTCTGCGTGTTTGCCCTTTTCCTCAGCTATAGTGCTGGCCAGCACCATGGCGAAAAGGGCATCTCTGTGCCTGAACATGGCTTCTGCCAGCCCATCTCCATCCCCCTGTGCACAGACATCCAGTACAACCAGACCATCATGCCCAACCTGTTGGGCCACACAAACCAAGAGGATGCTGGCCTGGAGGTGCACCAGTTTTACCCATTGGTTAAAGTACAATGCTCAGCAGACCTCAAGTTCTTCCTGTGCTCCATGTATGCACCCGTGTGCACTGTGCTGGAGCAAGCCATCCCACCATGCAGGTCGCTGTGCGAGCGTGCCCGCCATGGCTGTGAGGCGCTGATGAATAAGTTTGGCTTCCAGTGGCCTGAGAGACTACGCTGCGAGGCTTTCCCAGTGCACGGTGCTGGGGAGATCTGCGTGGGCCAGAACACGTCAGACCCCGGCAGCCCTACTTCAGAGCCCACTCTGTATGCGCCGGGATTGACACCACCTCCGGGTCCAGAAAGGTCTGGCCAGCCTTTTACGTGCCCACTACAGCTTGCTGTGCCTTCCTATCTCAACTACAAATTCTTGGGAGCCAAGGATTGTGGGGCGCCATGTGAGCACTCCCAGCCGCATGGACTCATGTACTTCAGAGAGGAGGAGATGAAATTTGGACGCCTTTGGGTGGGAATCTGGGCCATCTTGTGCTGTGTGAGCACCCTGTTCACGGTCCTCACCTACCTTGTGGACATGAGGCGGTTCCGTTATCCAGAGAGGCCCATCATTTTCCTCTCTGGCTGCTACTTTATGGTGGCGGTGGCTTATGTTACTGGCTTTCTGCTGGAGGACAAAGTGGTGTGCATTGATAAATTTAGGGAGGATGCGTACAGGACAGTGGCTCAGGGTACTAAAAAGGAGGGTTGCACCATCCTGTTTATGATCCTGTACTTCTTCGGTATGGCCAGCTCCATCTGGTGGGTGATCCTGTCCCTCACCTGGTTCCTCTCAGCTGGCATGAAATGGGGCCACGAGGCCATTGAGGCCAACTCGCAGTACTTCCACTTGGCAGCCTGGGCTGTGCCTGCTGTGAAGACAATCACCATCCTCGCCTTGGGCCAAGTGGACGGCGATCTCCTGACGGGCGTGTGCTTTGTGGGTATCTACAACGTGGACGCTCTGCGTGGATTTGTCTTGGCCCCACTCTTCGTCTACCTCTTCATCGGTACGTCCTTCCTGCTGGCTGGTTTTGTCTCGCTTTTCAGGATCCGGACCATCATGAAGCATGATGGTACTAAAACGGAGAAGCTGGAGAAGCTGATGGTGCGAATTGGCGTGTTCAGCGTGCTTTACACTGTCCCGGCCACCATAGTCATCGCCTGCTACTTCTATGAGCAGGCGTTCCGTGAGCAGTGGGAGAAAACATGGCACATGCAGACGTGCAAGCGCTTTGCTGtgccctgcccatcctccaacTTTGCACCCATGTCACCGGATTTTACCGTTTTCATGATTAAATACCTCATGACCATGATTGTGGGAATCACTTCGGGGTTCTGGATCTGGTCTGGGAAGACCCTGCAGTCGTGGCGCAGTTTCTACAAGCGTCTAGGAAATGCCCAGGGAGAGACTGCCGTTTAAAGCGATTTCTAAACAGACAATAATCAGTCAGGACTGCGAGACAGACTACAGGTCATAACTTACAGTGTGGATTAAAAACTTGCAAAGGACGTTGCCCAGTGGAGACCCACAGGATAATCTTGCTCAGATAATCCACATATGCCAAAAAAGCTTGCCTTATGACACTTAAATACTTGAACTTTGGCCCTGACTTTGTCTACACTTTTTTGAACTATTTTGCATGATTTCAGCATCAGTGGACTTTTTGTAATGTTCAAAAGGTTTTTTATTAGAATTGTTTTGTGTCtcgttaaaaaatgttttgtttaaacaCTAAGAAGACGTTTACGTCTTGAATATTGATGGAGAAAAGTTTATTGATGGCGAGAGAATCTCCGCAGTGgccaaaaaatatttgaatattaatCTTGTGCCTTGTAAAATTGACCAGTCCCCATAGttcaccttttttgtttgcttCATCAGTTTTTGGCATACATACCTAATGCAGGTGTTTGTATTTCTGATTGTTGTTGAATGTGTTTAGACCTTGTTTCATTTGGTTCATCTGACCTGTAAAACATAATTTTCTACAAGTAAATTCAAACTGACCTGGGCCTAATGACAAACGTGTGATTGTTGAGAAATGGAGTACAAACCACACTTGGTGTGCAGAGTTTGTACAGACATATTAGGGGGAAGACAAACTGTTACCAGATtttgtttaactgtttaactgtCATGTTACTGTTTTAAGACTACATGTATTTATTGAAAGtaatctctttttttaagaCCATGCTCTCCATTCAACAGTTTCACTTAATAAAGTGATTAGATTTTTAGACCCG

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0007199 G protein-coupled receptor signaling pathway coupled to cGMP nucleotide second messenger biological_process
GO:0007223 Wnt signaling pathway, calcium modulating pathway biological_process
GO:0030855 epithelial cell differentiation biological_process
GO:0007409 axonogenesis biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0007420 brain development biological_process
GO:0001944 vasculature development biological_process
GO:0090504 epiboly biological_process
GO:0032589 neuron projection membrane cellular_component
GO:0045177 apical part of cell cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K02432 FZD1_7, fz; frizzled 1/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119799 lncRNA downstream 17640 8242350 ~ 8244544 (-) False G89067
TU119798 lncRNA downstream 18864 8242350 ~ 8243320 (-) True G89067
TU119753 lncRNA downstream 180594 8081373 ~ 8081590 (-) True G89038
TU119750 lncRNA downstream 182404 8079064 ~ 8079780 (-) True G89036
TU119743 lncRNA downstream 183127 8075884 ~ 8079057 (-) True G89029
TU119813 lncRNA upstream 7319 8274662 ~ 8274864 (-) True G89074
TU119896 lncRNA upstream 118089 8385432 ~ 8389028 (-) True G89135
TU119894 lncRNA upstream 130197 8397540 ~ 8404379 (-) True G89134
TU119904 lncRNA upstream 152334 8419677 ~ 8422791 (-) True G89141
TU119938 lncRNA upstream 205231 8472574 ~ 8473740 (-) True G89169
XM_007248877.3 mRNA downstream 23056 8230069 ~ 8239128 (-) True nop58
XM_007248879.3 mRNA downstream 53081 8200748 ~ 8209103 (-) True wdr12
XM_022673457.1 mRNA downstream 63094 8166929 ~ 8199090 (-) True ercc3
XM_007248881.3 mRNA downstream 103742 8149469 ~ 8158442 (-) True LOC103026207
XM_007248882.3 mRNA downstream 117185 8125546 ~ 8144999 (-) True map3k2
XM_007248874.3 mRNA upstream 34451 8301794 ~ 8355677 (-) False cdk15
XM_022673458.1 mRNA upstream 34451 8301794 ~ 8332078 (-) True cdk15
XM_022673460.1 mRNA upstream 34451 8301794 ~ 8323620 (-) False cdk15
XM_007248899.2 mRNA upstream 193655 8460998 ~ 8478571 (-) True LOC103032246
XM_007248859.3 mRNA upstream 257092 8524435 ~ 8536857 (-) True LOC103046974
TU119448 other downstream 1019614 7241711 ~ 7242570 (-) True G88789
TU119427 other downstream 1144058 7117661 ~ 7118126 (-) True G88779
TU119041 other downstream 3666859 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 3695980 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 4570720 3606470 ~ 3691464 (-) False lyrm4
TU120441 other upstream 1535428 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 1627482 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 1693939 9961282 ~ 9964606 (-) True G89708
TU120687 other upstream 1772214 10039557 ~ 10042853 (-) False LOC103025178
TU120738 other upstream 1956177 10223520 ~ 10224663 (-) True G89751

Expression Profile