Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_022673457.1 |
| length | 3862 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 15 |
| gene id | ercc3 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035906.1 |
| NCBI id | CM008309.1 |
| chromosome length | 35377769 |
| location | 8166929 ~ 8199090 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0006915 | apoptotic process | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006366 | transcription by RNA polymerase II | biological_process |
| GO:0006200 | obsolete ATP catabolic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0032508 | DNA duplex unwinding | biological_process |
| GO:0006265 | DNA topological change | biological_process |
| GO:0006283 | transcription-coupled nucleotide-excision repair | biological_process |
| GO:0005675 | transcription factor TFIIH holo complex | cellular_component |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | molecular_function |
| GO:0005506 | iron ion binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0043138 | 3'-5' DNA helicase activity | molecular_function |
| GO:0008353 | RNA polymerase II CTD heptapeptide repeat kinase activity | molecular_function |
| GO:0020037 | heme binding | molecular_function |
| id | description |
|---|---|
| K10843 | ERCC3, XPB; DNA excision repair protein ERCC-3 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU119753 | lncRNA | downstream | 85339 | 8081373 ~ 8081590 (-) | True | G89038 |
| TU119750 | lncRNA | downstream | 87149 | 8079064 ~ 8079780 (-) | True | G89036 |
| TU119743 | lncRNA | downstream | 87872 | 8075884 ~ 8079057 (-) | True | G89029 |
| TU119749 | lncRNA | downstream | 97309 | 8069404 ~ 8069620 (-) | True | G89035 |
| TU119604 | lncRNA | downstream | 524151 | 7598802 ~ 7642778 (-) | True | G88923 |
| TU119798 | lncRNA | upstream | 43260 | 8242350 ~ 8243320 (-) | True | G89067 |
| TU119799 | lncRNA | upstream | 43260 | 8242350 ~ 8244544 (-) | False | G89067 |
| TU119813 | lncRNA | upstream | 75572 | 8274662 ~ 8274864 (-) | True | G89074 |
| TU119896 | lncRNA | upstream | 186342 | 8385432 ~ 8389028 (-) | True | G89135 |
| TU119894 | lncRNA | upstream | 198450 | 8397540 ~ 8404379 (-) | True | G89134 |
| XM_007248881.3 | mRNA | downstream | 8487 | 8149469 ~ 8158442 (-) | True | LOC103026207 |
| XM_007248882.3 | mRNA | downstream | 21930 | 8125546 ~ 8144999 (-) | True | map3k2 |
| XM_007248883.3 | mRNA | downstream | 51318 | 8085569 ~ 8115611 (-) | True | LOC103027002 |
| XM_022673453.1 | mRNA | downstream | 281064 | 7874926 ~ 7885865 (-) | False | ccdc14 |
| XM_007248884.3 | mRNA | downstream | 281064 | 7874926 ~ 7885865 (-) | True | ccdc14 |
| XM_007248879.3 | mRNA | upstream | 1658 | 8200748 ~ 8209103 (-) | True | wdr12 |
| XM_007248877.3 | mRNA | upstream | 30979 | 8230069 ~ 8239128 (-) | True | nop58 |
| XM_007248875.3 | mRNA | upstream | 63094 | 8262184 ~ 8267343 (-) | True | LOC103024641 |
| XM_007248874.3 | mRNA | upstream | 102704 | 8301794 ~ 8355677 (-) | False | cdk15 |
| XM_022673458.1 | mRNA | upstream | 102704 | 8301794 ~ 8332078 (-) | True | cdk15 |
| TU119448 | other | downstream | 924359 | 7241711 ~ 7242570 (-) | True | G88789 |
| TU119427 | other | downstream | 1048803 | 7117661 ~ 7118126 (-) | True | G88779 |
| TU119041 | other | downstream | 3571604 | 4595058 ~ 4595325 (-) | True | G88465 |
| TU119034 | other | downstream | 3600725 | 4565850 ~ 4566204 (-) | True | G88458 |
| TU118917 | other | downstream | 4475465 | 3606470 ~ 3691464 (-) | False | lyrm4 |
| TU120441 | other | upstream | 1603681 | 9802771 ~ 9854074 (-) | False | LOC103029706 |
| TU120626 | other | upstream | 1695735 | 9894825 ~ 9901700 (-) | True | G89690 |
| TU120653 | other | upstream | 1762192 | 9961282 ~ 9964606 (-) | True | G89708 |
| TU120687 | other | upstream | 1840467 | 10039557 ~ 10042853 (-) | False | LOC103025178 |
| TU120738 | other | upstream | 2024430 | 10223520 ~ 10224663 (-) | True | G89751 |
