RNA id: XM_007248877.3


Basic Information

Item Value
RNA id XM_007248877.3
length 2344
RNA type mRNA
GC content 0.47
exon number 15
gene id nop58
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8230069 ~ 8239128 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cgggaGTTGCCCGCGTGCACCGCGTGGTGAGCAGAAGTTCATGCGGTTAGCCGTGCTGTGGAGCTGCTCTCAGCCGGGAGCGCGTTAATTCCTCTTATATTAACCAAACAGACAGTTAGATAAAGATGTTGGTGTTGTTTGAGACTGCGGCAGGCTATGCCATCTTTAAGGTCCTCGATGAGCAGAAGCTTCAGCAGGTGGACAACCTGTGGAAGGAGTTCGAAACGCCGGAAAAAGCCAACAAAGTAGTgaagttaaaatattttgagaagTTTCAAGACACAACTGAAGCTCTGGCAGCGGCCACTGCTTTGGTAGAAGGGAAGCTTGGAAAAAGTTTGAAGAAGGTGTTGAAAAAAGTTGTGGCCAAAGATGCTCATGAGCAGCTGGCGATTACAGATGCTAAACTGGGAGGAGTTATCAAAGAAAAGCTGAACCTGAGCTGTGTACACAGTCCAGCTGTAGCTGAGCTCATGAGGGGCATCAGGAATCAGATGGAGGGCCTCATCACTGGTCTTCCTCCCAGAGAAATCAGTGCCATGTCTCTTGGTCTGGCTCAcagCCTTTCCCGATACAAGCTGAAGTTCAGTCCAGACAAAGTGGATACCATGATTGTTCAGGCCATATCTTTACTGGATGATCTGGACAAAGAGCTGAATAACTACATCATGCGCTGTCGTGAGTGGTACGGCTGGCATTTCCCCGAACTCGGAAAAATCATCACAGACAATCTGGCCTACTGCAAGACTGTCCGCAAGATTGGTGACCGCACAAATGTGGCAATCACTGACCTGTCTGATGTGCTGCCAGAGGAGACCGAGGCTGAGGTCAAACTGGCTGTGGAAATCTCAATGGGAACAGAAGTATCTGAGGAGGATATTACCAACATCATGCACTTGTGTGACCAGGTGATTGAAATCTCAGAATATCGTACTCAGCTGTACGATTACTTGAAAAACCGCATGATGGCCATCGCACCAAACCTCACAGTTATGGTGGGAGAACTGGTGGGGGCTCGCCTCATTTCACATGCTGGTTCCCTGCTGAACTTGGCAAAGCACCCTGCATCCACAGTGCAGATTCTGGGGGCAGAGAAAGCTTTGTTCAGAGCGCTGAAGACCAGGAGGGACACGCCAAAGTACGGTCTGATCTACCATGCCTCCCTGGTGGGACAGACTACAGCTAAAAACAAGGGCAAGATATCCAGAACGTTAGCAGCTAAAACAGCTTTGGCCATCCGCTACGATGCACTGGGTGAAGACACCAATGCTGAAATGGGACTGGAAAACCGAGCCAAGCTGGAAGTGCGCCTGCGGCAACTGGAGGAGAAAGGAATCAGACGCATCAGTGGGTCAGGCAAGGCTCTGGCCAGGGCAGACAAGTATCAGCACAAGAGTGATGTTAAAGTGTACGACCCATCTGGCGACTCTACGCTCCCCTCGGTCTCCaagaagagaaaaatagaggAAGTGGAGGAAGCAGAGGAGGAAGACAGGCCAGTGGAGGctaaacccaaaaaaataaagaaagaagctCCAACAGAAGAAACTGAAGCAGCAGCTGAGGCACAAACAGAGACGcccaagaagaaaaagaagaagaagaagcaccagcaggaggaggagcctGCAGCGGAAGAGGAACCCGCAGTCAAGGAGGAGGAGCCTGCAGTAGAAGAGacaacagagaaaaagaagaaaaagaaagaaaagaaacgaGCAGCAGAGGAAGAACTAGAGGCAACAGTCAGTCCCACAGAAGAGacgacagaaaagaagaaaaagaaaaagaagaaagttaaagaagaggaagatgaatgaacAAAGACTTTCCCCCCTTTTCTCTGAACATTTTTCCTGTATATGAAATTTTATACATCTTGTTTATGGACGTCATGTGATGGCTACATGACAGAGCCTGGGCTGTTTAACCCTGACCAACTTCAGAGGACTATTTTtagtacaattttattttacacaaattattTCCTTTTAAGTATGAGAATTTAAAGCTCGGTTAAGAGGAAATACAGATGTGACTGTAGATTTGGTGCAGGTGGAGCCAGCAGCTTTCTACATGTGCTGGAGTTGCTGCACGCAGGGCCGATCGGTTTGCCTTTTTTGTATGTGCGTTCTGATTTTGAAGAAAATGATGTAAAAGTGGTTTCTGTGTTGAGAAGCTGAGCTGTTATTGAACAAGTGAGAGGGAGGTGTCTGCTGTGACTCCAAGAATaattcactgttttgttttcttgttttgtttcccCCTCTGATTCCACAGTGAATAAATCATACTCTTCAGGCCAGTACACTCGCCCATGCTGGTCTCAAGATTCTGACATGGA

Function

GO: NA

KEGG:

id description
K14565 NOP58; nucleolar protein 58

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119753 lncRNA downstream 148479 8081373 ~ 8081590 (-) True G89038
TU119750 lncRNA downstream 150289 8079064 ~ 8079780 (-) True G89036
TU119743 lncRNA downstream 151012 8075884 ~ 8079057 (-) True G89029
TU119749 lncRNA downstream 160449 8069404 ~ 8069620 (-) True G89035
TU119604 lncRNA downstream 587291 7598802 ~ 7642778 (-) True G88923
TU119798 lncRNA upstream 3222 8242350 ~ 8243320 (-) True G89067
TU119799 lncRNA upstream 3222 8242350 ~ 8244544 (-) False G89067
TU119813 lncRNA upstream 35534 8274662 ~ 8274864 (-) True G89074
TU119896 lncRNA upstream 146304 8385432 ~ 8389028 (-) True G89135
TU119894 lncRNA upstream 158412 8397540 ~ 8404379 (-) True G89134
XM_007248879.3 mRNA downstream 20966 8200748 ~ 8209103 (-) True wdr12
XM_022673457.1 mRNA downstream 30979 8166929 ~ 8199090 (-) True ercc3
XM_007248881.3 mRNA downstream 71627 8149469 ~ 8158442 (-) True LOC103026207
XM_007248882.3 mRNA downstream 85070 8125546 ~ 8144999 (-) True map3k2
XM_007248883.3 mRNA downstream 114458 8085569 ~ 8115611 (-) True LOC103027002
XM_007248875.3 mRNA upstream 23056 8262184 ~ 8267343 (-) True LOC103024641
XM_007248874.3 mRNA upstream 62666 8301794 ~ 8355677 (-) False cdk15
XM_022673458.1 mRNA upstream 62666 8301794 ~ 8332078 (-) True cdk15
XM_022673460.1 mRNA upstream 62666 8301794 ~ 8323620 (-) False cdk15
XM_007248899.2 mRNA upstream 221870 8460998 ~ 8478571 (-) True LOC103032246
TU119448 other downstream 987499 7241711 ~ 7242570 (-) True G88789
TU119427 other downstream 1111943 7117661 ~ 7118126 (-) True G88779
TU119041 other downstream 3634744 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 3663865 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 4538605 3606470 ~ 3691464 (-) False lyrm4
TU120441 other upstream 1563643 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 1655697 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 1722154 9961282 ~ 9964606 (-) True G89708
TU120687 other upstream 1800429 10039557 ~ 10042853 (-) False LOC103025178
TU120738 other upstream 1984392 10223520 ~ 10224663 (-) True G89751

Expression Profile