RNA id: XM_007248882.3


Basic Information

Item Value
RNA id XM_007248882.3
length 3347
RNA type mRNA
GC content 0.51
exon number 17
gene id map3k2
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8125546 ~ 8144999 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGACTGGTCCATCGGCGGCTCGGCGCGGGGGGGAGAGAGCGGCGCTCCGGGATTAGTCTTCAGTCGAGCCGTGTTTGATACCTGCGGTTTCTACATATGAACAAAACCACGCCGTTAAACGGTtatctgtgtgtctgtatttGCGGCACGGCCTCGCGGATACGACGCTTTTGGCCTGAATGTGAAGCGAGTTCGGTGATTAATCGCTCGGCCTGTAGCGCATCGACAGCGGCGGCAGTGGCGGCGGTTAGCGGAGCTGAGCTAGTGCTCTGGGGCCTCGGACTGAAGTTGCAGTTGTATGCGGACTTTACAACTTCTTAAGCCGGGTTTGGAGGTTCTTAAAGTCGGGCAGGGCCCCCACTTCCCAAGGCCTTCGGATGAGGAAGTGAAGATACACGAACCACCCAGGAGAAAGGAACCCATTTAATGGGAGATATCCTCTATCCTGAACTCCTGGGGCCGACTGTGAGCAGTTATCATGGACGAGCAAGAGGTTCTAAACTCGATCATGCAGGACTTGGTTGAGCTGCATCGCTCTAGCCGGCCAGCCATGTCTCTGTCTGACCTGGGCAAACCCAAGGCTTCGTCTCCCAAGAACCAGAACGATGTTCGAGTAAAGTTCGAGTACAGGGGAGAGAAGAGGATTCTGCAGTTTCCTCGGCCCCTCAGGCTAGATGATCTCAGCACCAAAGCTAAAGTGGCGTTTGGGCAGGCCATGGACCTGCACTACACCAATAATGAGCTGGTGATTCCTCTGAGCACTCAGGATGATCTGGATAAAGCCGTGGAGCTGCTGGATCGTTCTGTCCACATGAAGAGTCTGAAAATTCTGCTGGTGTTGCCAGCTTCTTCCCAGaACTCAGTCTCCAGCATGGATCTTCTGCCTACTCGTGACAATCTGGACAACACAGACAGTAACAACATGTTAGCCATTATAGGCTCTCAGTCCACCGACCGCAGTTCACCTCCTCCAGGCTACATCCCTGATGCCCTGCAGCAAGTTGCCAGAAACGGTTCCTTCACCAGCATCAACAGCGAGGGAGAGTTTATACCAGAAAGCATGGACCAGATGCTGGACCCCCTGTCCATGAGCAGCCCTGAGAATTCAGCATCAGGCAGCTGTCCTTCTCTGGATAGTCCACTAGACAGTGATAGCTATCCTAAATCCCGCATGCCCCGAGCTCAGAGTTACCCAGACAATCATCAGGAGTTCGCTGAGTGTGATATTCCAGTGTTTGAGAAGTCAGGGAAAGGTGGAACATATCCCCGGAGATACCACATTTCCTTCTGTCAGCAGGACTACAGCGATGGGCGGAAGACGTTTCCACGAGCGCGGCGGACACAGGGCCATGGTTTCCGCTCCCCAGTGAGTTTCAGCCCAACTGACCAGAGCCTGAGCACCAGCAGTGGAAGCAGCATCTTCACCCCTGAGCTGGAGGAGCCGGGCCGCCGACGCCGTGGCAGCGACATTGAGCCAAATCCAAATACTAATCCCACCCTTTCAGTCATGGACATCAGCCCACCCAGCCGCTcacCTCGTGCGCCCACTAACTGGCGTTTGGGGAAGCTGTTGGGACAGGGAGCCTTTGGCCGAGTCTTCCTGTGTTATGACGCCGACACTGGACGAGAACTTGCTGTCAAACAGGTCCAGTTCGATCCAGACAGCCCAGAGACTAGCAAGgaGGTGAGTGCATTAGAGTGTGAGATTCAGCTCCTGAAGAATCTTTTCCATGAGCGCATAGTCCAGTACTACGGTTGCCTGCGCGACACACACGAAAGAACTCTATCAATTTTCATGGAGTACATGCCTGGGGGCTCGATTAAAGACCAGCTGAAATCATATGGTGCGCTGACAGAAAACGTTACACGCAAATACACTCGGCAGATCCTGGAAGGAGTATGTTACCTCCACAGTAACATGATTGTACACAGAGACATCAAAGgtgctAACATCCTGAGGGACTCAGCTGGGAATGTAAAGCTAGGCGATTTTGGGGCAAGTCGTCGGCTACAAACCATCTGTCTGTCGGGGACGGGGATAAAGTCAGTGACAGGAACGCCATACTGGATGAGCCCAGAGGTGATCAGTGGAGAAGGCTATGGAAGAAAGGCAGATATCTGGAGTGTTGGCTGCACCGTGGTAGAAATGCTAACTCTGCGACCTCCCTGGGCAGAATTCGAGGCCATGGCGGCCATCTTCAAAATCGCCACACAGCCCACCAACCCTGCTCTCCCGGCTCACGTATCTGACCACTGCCGCGACTTCCTCAAACGCATTTTTGTGGAAACAAAACAGAGGCCCGCTGCTGAGGAATTATTACGGCACATTTTCGTTCACTAACCCACCCTCCCCTCAATCACTGACCGATCAGAAATTGTCTGTAGGCTCTGCCCTTTCGTAGACTCCCCCCAGCCTGCTGTGCAGAACGCCCCGTTGGACCAGACAGGATGTGGGCGTGGCCTAGCAGGAAAgagggattacatttttttcctcttattgGTGGAGGACTGCAGTTGGGGAGCAGCTTGAATCCCTATGAAAACGTTTGCACCTTAATTTCACTCAGGGGTAAGTAACGTACCCCTGTAGACTTTATCTCGGTAGgtaacaatttttttgtttgtttgttttgttgttcgTCTTGAGTTTTTAATGTTATCTGCAATTGTGGAGTGGGAGCCTTCACTCTGGGGAGTCTAGTGGAGTTATCGACTCGCTGGATGAATCCGAGAGGCTGTCTGGTCCAGACTCGACCCAGAATGTACCGTCAGCATCCCCAGAACACGTCCGGTATGCCGTCAAGCTGCTAAAgaggaaaatggaaaaagtagAGGGAAACAAAGTAAGGagataataatgatgattatgatgacaCCAGACCAACCCATCCCACTTGACTCTTCTAAGTTCTCATTTTCTTGCACAGTTTGTGtacaaaacatacacacacacacacacacacacacacacacaaacacaaactttcCTGAAGGACTACACTGTAGAATATGTCACTCACTATGCTGTACAAACATTAGTTTGCTGTACCTCCCttttttctcaatctctctctctctctctttatctctctgtccaCCCTTCTCTACCGGAGAGTGCCACCATGTTGTGCTGTAGAACCCTTTAGCAGGGTtgtgcttctttttctttttctgccaaCAGTCCGCAATCCGTTTTTTTAATGGTGTGCCTTTTAGATTAGTAGATTCTAAGAATTCTAGTAGAAGCTTCATCATTCtttttgcttcttcttctttttcttttttttttgtaacagttTGTGCCACCACAGCACAGCTAAAGCGcttgttttgttaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K04420 MAP3K2, MEKK2; mitogen-activated protein kinase kinase kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119753 lncRNA downstream 43956 8081373 ~ 8081590 (-) True G89038
TU119750 lncRNA downstream 45766 8079064 ~ 8079780 (-) True G89036
TU119743 lncRNA downstream 46489 8075884 ~ 8079057 (-) True G89029
TU119749 lncRNA downstream 55926 8069404 ~ 8069620 (-) True G89035
TU119604 lncRNA downstream 482768 7598802 ~ 7642778 (-) True G88923
TU119798 lncRNA upstream 97351 8242350 ~ 8243320 (-) True G89067
TU119799 lncRNA upstream 97351 8242350 ~ 8244544 (-) False G89067
TU119813 lncRNA upstream 129663 8274662 ~ 8274864 (-) True G89074
TU119896 lncRNA upstream 240433 8385432 ~ 8389028 (-) True G89135
TU119894 lncRNA upstream 252541 8397540 ~ 8404379 (-) True G89134
XM_007248883.3 mRNA downstream 9935 8085569 ~ 8115611 (-) True LOC103027002
XM_022673453.1 mRNA downstream 239681 7874926 ~ 7885865 (-) False ccdc14
XM_007248884.3 mRNA downstream 239681 7874926 ~ 7885865 (-) True ccdc14
XM_022673452.1 mRNA downstream 252147 7861435 ~ 7873399 (-) False iqcb1
XM_022673450.1 mRNA downstream 252147 7861435 ~ 7873399 (-) True iqcb1
XM_007248881.3 mRNA upstream 4470 8149469 ~ 8158442 (-) True LOC103026207
XM_022673457.1 mRNA upstream 21930 8166929 ~ 8199090 (-) True ercc3
XM_007248879.3 mRNA upstream 55749 8200748 ~ 8209103 (-) True wdr12
XM_007248877.3 mRNA upstream 85070 8230069 ~ 8239128 (-) True nop58
XM_007248875.3 mRNA upstream 117185 8262184 ~ 8267343 (-) True LOC103024641
TU119448 other downstream 882976 7241711 ~ 7242570 (-) True G88789
TU119427 other downstream 1007420 7117661 ~ 7118126 (-) True G88779
TU119041 other downstream 3530221 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 3559342 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 4434082 3606470 ~ 3691464 (-) False lyrm4
TU120441 other upstream 1657772 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 1749826 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 1816283 9961282 ~ 9964606 (-) True G89708
TU120687 other upstream 1894558 10039557 ~ 10042853 (-) False LOC103025178
TU120738 other upstream 2078521 10223520 ~ 10224663 (-) True G89751

Expression Profile