Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC103024641 |
| gene name | fzd7,fzd7b,LOC108430030,LOC107660027,LOC107581350,LOC107706658 |
| gene type | coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035906.1 |
| NCBI id | CM008309.1 |
| chromosome length | 35377769 |
| location | 8262184 ~ 8267343 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| fzd7b | Predicted to enable Wnt-activated receptor activity and Wnt-protein binding activity. Acts upstream of or within convergent extension involved in gastrulation; epiboly; and neuromast development. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including mesoderm; nervous system; neural keel; neural tube; and trunk mesenchyme. Orthologous to human FZD7 (frizzled class receptor 7). |
| fzd7 | Enables several functions, including PDZ domain binding activity; Wnt-activated receptor activity; and Wnt-protein binding activity. Involved in several processes, including Wnt signaling pathway; negative regulation of cell differentiation; and positive regulation of cellular metabolic process. Located in plasma membrane and recycling endosome membrane. Biomarker of nephroblastoma. |
| description |
|---|
| PREDICTED: frizzled-7-A-like |
| id | name | namespace |
|---|---|---|
| GO:0060070 | canonical Wnt signaling pathway | biological_process |
| GO:0008406 | gonad development | biological_process |
| GO:0007199 | G protein-coupled receptor signaling pathway coupled to cGMP nucleotide second messenger | biological_process |
| GO:0007223 | Wnt signaling pathway, calcium modulating pathway | biological_process |
| GO:0030855 | epithelial cell differentiation | biological_process |
| GO:0007409 | axonogenesis | biological_process |
| GO:0060027 | convergent extension involved in gastrulation | biological_process |
| GO:0007420 | brain development | biological_process |
| GO:0001944 | vasculature development | biological_process |
| GO:0090504 | epiboly | biological_process |
| GO:0032589 | neuron projection membrane | cellular_component |
| GO:0045177 | apical part of cell | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0030165 | PDZ domain binding | molecular_function |
| GO:0042813 | Wnt-activated receptor activity | molecular_function |
| GO:0017147 | Wnt-protein binding | molecular_function |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| id | description |
|---|---|
| K02432 | FZD1_7, fz; frizzled 1/7 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_007248875.3 | True | 2909 | mRNA | 0.50 | 2 | 8262184 | 8267343 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nop58 | nop58,LOC107705548,LOC107660025 | coding | downstream | 23056 | 8230069 ~ 8239128 (-) |
| wdr12 | wdr12,LOC107677607,LOC107706661 | coding | downstream | 53081 | 8200748 ~ 8209103 (-) |
| ercc3 | ercc3 | coding | downstream | 63094 | 8166929 ~ 8199090 (-) |
| LOC103026207 | cyp27c1,LOC108430031,LOC108272716,LOC107677575,LOC107706664 | coding | downstream | 103742 | 8149469 ~ 8158442 (-) |
| map3k2 | map3k2,LOC107660022,LOC107677576,LOC107581346,LOC107584801 | coding | downstream | 117185 | 8125546 ~ 8144999 (-) |
| cdk15 | cdk15,LOC107706659,LOC107677597 | coding | upstream | 34451 | 8301794 ~ 8355677 (-) |
| LOC103032246 | NA | coding | upstream | 193655 | 8460998 ~ 8478571 (-) |
| LOC103046974 | itm2b,LOC108430053 | coding | upstream | 257092 | 8524435 ~ 8536857 (-) |
| nudt15 | LOC107705561,LOC107584789 | coding | upstream | 274132 | 8541475 ~ 8544605 (-) |
| LOC103046152 | LOC103046152,LOC108430057,LOC108272427,LOC107584782,LOC107705557,LOC107660037 | coding | upstream | 428027 | 8695370 ~ 8733887 (-) |
| G89067 | NA | non-coding | downstream | 17640 | 8242350 ~ 8244544 (-) |
| G89038 | NA | non-coding | downstream | 180594 | 8081373 ~ 8081590 (-) |
| G89036 | NA | non-coding | downstream | 182404 | 8079064 ~ 8079780 (-) |
| G89029 | NA | non-coding | downstream | 183127 | 8075884 ~ 8079057 (-) |
| G89035 | NA | non-coding | downstream | 192564 | 8069404 ~ 8069620 (-) |
| G89074 | NA | non-coding | upstream | 7319 | 8274662 ~ 8274864 (-) |
| G89135 | als2 | non-coding | upstream | 118089 | 8385432 ~ 8389028 (-) |
| G89134 | als2 | non-coding | upstream | 130197 | 8397540 ~ 8404379 (-) |
| G89141 | NA | non-coding | upstream | 152334 | 8419677 ~ 8422791 (-) |
| G89169 | NA | non-coding | upstream | 205231 | 8472574 ~ 8473740 (-) |
| G88789 | NA | other | downstream | 1019614 | 7241711 ~ 7242570 (-) |
| LOC103026131 | LOC108431006 | other | downstream | 1046945 | 7103571 ~ 7215239 (-) |
| G88779 | NA | other | downstream | 1144058 | 7117661 ~ 7118126 (-) |
| vstm2a | vstm2a | other | downstream | 1529520 | 6676275 ~ 6732664 (-) |
| G88465 | NA | other | downstream | 3666859 | 4595058 ~ 4595325 (-) |
| LOC103029706 | LOC108429024,LOC108268385,LOC107749226,LOC107685514 | other | upstream | 1517280 | 9784623 ~ 9854099 (-) |
| G89690 | zyx,LOC108428910 | other | upstream | 1627482 | 9894825 ~ 9901700 (-) |
| G89708 | gapdh,LOC107550818 | other | upstream | 1693939 | 9961282 ~ 9964606 (-) |
| LOC103025178 | LOC108429038 | other | upstream | 1744474 | 10011817 ~ 10042853 (-) |
| G89751 | NA | other | upstream | 1956177 | 10223520 ~ 10224663 (-) |
