nop58 (nop58,LOC107705548,LOC107660025)


Basic Information

Item Value
gene id nop58
gene name nop58,LOC107705548,LOC107660025
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8230069 ~ 8239128 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248877.3
cgggaGTTGCCCGCGTGCACCGCGTGGTGAGCAGAAGTTCATGCGGTTAGCCGTGCTGTGGAGCTGCTCTCAGCCGGGAGCGCGTTAATTCCTCTTATATTAACCAAACAGACAGTTAGATAAAGATGTTGGTGTTGTTTGAGACTGCGGCAGGCTATGCCATCTTTAAGGTCCTCGATGAGCAGAAGCTTCAGCAGGTGGACAACCTGTGGAAGGAGTTCGAAACGCCGGAAAAAGCCAACAAAGTAGTgaagttaaaatattttgagaagTTTCAAGACACAACTGAAGCTCTGGCAGCGGCCACTGCTTTGGTAGAAGGGAAGCTTGGAAAAAGTTTGAAGAAGGTGTTGAAAAAAGTTGTGGCCAAAGATGCTCATGAGCAGCTGGCGATTACAGATGCTAAACTGGGAGGAGTTATCAAAGAAAAGCTGAACCTGAGCTGTGTACACAGTCCAGCTGTAGCTGAGCTCATGAGGGGCATCAGGAATCAGATGGAGGGCCTCATCACTGGTCTTCCTCCCAGAGAAATCAGTGCCATGTCTCTTGGTCTGGCTCAcagCCTTTCCCGATACAAGCTGAAGTTCAGTCCAGACAAAGTGGATACCATGATTGTTCAGGCCATATCTTTACTGGATGATCTGGACAAAGAGCTGAATAACTACATCATGCGCTGTCGTGAGTGGTACGGCTGGCATTTCCCCGAACTCGGAAAAATCATCACAGACAATCTGGCCTACTGCAAGACTGTCCGCAAGATTGGTGACCGCACAAATGTGGCAATCACTGACCTGTCTGATGTGCTGCCAGAGGAGACCGAGGCTGAGGTCAAACTGGCTGTGGAAATCTCAATGGGAACAGAAGTATCTGAGGAGGATATTACCAACATCATGCACTTGTGTGACCAGGTGATTGAAATCTCAGAATATCGTACTCAGCTGTACGATTACTTGAAAAACCGCATGATGGCCATCGCACCAAACCTCACAGTTATGGTGGGAGAACTGGTGGGGGCTCGCCTCATTTCACATGCTGGTTCCCTGCTGAACTTGGCAAAGCACCCTGCATCCACAGTGCAGATTCTGGGGGCAGAGAAAGCTTTGTTCAGAGCGCTGAAGACCAGGAGGGACACGCCAAAGTACGGTCTGATCTACCATGCCTCCCTGGTGGGACAGACTACAGCTAAAAACAAGGGCAAGATATCCAGAACGTTAGCAGCTAAAACAGCTTTGGCCATCCGCTACGATGCACTGGGTGAAGACACCAATGCTGAAATGGGACTGGAAAACCGAGCCAAGCTGGAAGTGCGCCTGCGGCAACTGGAGGAGAAAGGAATCAGACGCATCAGTGGGTCAGGCAAGGCTCTGGCCAGGGCAGACAAGTATCAGCACAAGAGTGATGTTAAAGTGTACGACCCATCTGGCGACTCTACGCTCCCCTCGGTCTCCaagaagagaaaaatagaggAAGTGGAGGAAGCAGAGGAGGAAGACAGGCCAGTGGAGGctaaacccaaaaaaataaagaaagaagctCCAACAGAAGAAACTGAAGCAGCAGCTGAGGCACAAACAGAGACGcccaagaagaaaaagaagaagaagaagcaccagcaggaggaggagcctGCAGCGGAAGAGGAACCCGCAGTCAAGGAGGAGGAGCCTGCAGTAGAAGAGacaacagagaaaaagaagaaaaagaaagaaaagaaacgaGCAGCAGAGGAAGAACTAGAGGCAACAGTCAGTCCCACAGAAGAGacgacagaaaagaagaaaaagaaaaagaagaaagttaaagaagaggaagatgaatgaacAAAGACTTTCCCCCCTTTTCTCTGAACATTTTTCCTGTATATGAAATTTTATACATCTTGTTTATGGACGTCATGTGATGGCTACATGACAGAGCCTGGGCTGTTTAACCCTGACCAACTTCAGAGGACTATTTTtagtacaattttattttacacaaattattTCCTTTTAAGTATGAGAATTTAAAGCTCGGTTAAGAGGAAATACAGATGTGACTGTAGATTTGGTGCAGGTGGAGCCAGCAGCTTTCTACATGTGCTGGAGTTGCTGCACGCAGGGCCGATCGGTTTGCCTTTTTTGTATGTGCGTTCTGATTTTGAAGAAAATGATGTAAAAGTGGTTTCTGTGTTGAGAAGCTGAGCTGTTATTGAACAAGTGAGAGGGAGGTGTCTGCTGTGACTCCAAGAATaattcactgttttgttttcttgttttgtttcccCCTCTGATTCCACAGTGAATAAATCATACTCTTCAGGCCAGTACACTCGCCCATGCTGGTCTCAAGATTCTGACATGGA

Function

symbol description
nop58 Predicted to enable snoRNA binding activity. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleolus. Predicted to be part of box C/D RNP complex and small-subunit processome. Is expressed in several structures, including axial vasculature; digestive system; musculature system; nervous system; and pectoral fin bud. Orthologous to human NOP58 (NOP58 ribonucleoprotein).

NR:

description
PREDICTED: nucleolar protein 58 isoform X2

GO: NA

KEGG:

id description
K14565 NOP58; nucleolar protein 58

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248877.3 True 2344 mRNA 0.47 15 8230069 8239128

Neighbor

gene id symbol gene type direction distance location
wdr12 wdr12,LOC107677607,LOC107706661 coding downstream 20966 8200748 ~ 8209103 (-)
ercc3 ercc3 coding downstream 30979 8166929 ~ 8199090 (-)
LOC103026207 cyp27c1,LOC108430031,LOC108272716,LOC107677575,LOC107706664 coding downstream 71627 8149469 ~ 8158442 (-)
map3k2 map3k2,LOC107660022,LOC107677576,LOC107581346,LOC107584801 coding downstream 85070 8125546 ~ 8144999 (-)
LOC103027002 LOC108430032,LOC107705485,LOC107706665 coding downstream 114458 8085569 ~ 8115611 (-)
LOC103024641 fzd7,fzd7b,LOC108430030,LOC107660027,LOC107581350,LOC107706658 coding upstream 23056 8262184 ~ 8267343 (-)
cdk15 cdk15,LOC107706659,LOC107677597 coding upstream 62666 8301794 ~ 8355677 (-)
LOC103032246 NA coding upstream 221870 8460998 ~ 8478571 (-)
LOC103046974 itm2b,LOC108430053 coding upstream 285307 8524435 ~ 8536857 (-)
nudt15 LOC107705561,LOC107584789 coding upstream 302347 8541475 ~ 8544605 (-)
G89038 NA non-coding downstream 148479 8081373 ~ 8081590 (-)
G89036 NA non-coding downstream 150289 8079064 ~ 8079780 (-)
G89029 NA non-coding downstream 151012 8075884 ~ 8079057 (-)
G89035 NA non-coding downstream 160449 8069404 ~ 8069620 (-)
G88923 NA non-coding downstream 587291 7598802 ~ 7642778 (-)
G89067 NA non-coding upstream 3222 8242350 ~ 8244544 (-)
G89074 NA non-coding upstream 35534 8274662 ~ 8274864 (-)
G89135 als2 non-coding upstream 146304 8385432 ~ 8389028 (-)
G89134 als2 non-coding upstream 158412 8397540 ~ 8404379 (-)
G89141 NA non-coding upstream 180549 8419677 ~ 8422791 (-)
G88789 NA other downstream 987499 7241711 ~ 7242570 (-)
LOC103026131 LOC108431006 other downstream 1014830 7103571 ~ 7215239 (-)
G88779 NA other downstream 1111943 7117661 ~ 7118126 (-)
vstm2a vstm2a other downstream 1497405 6676275 ~ 6732664 (-)
G88465 NA other downstream 3634744 4595058 ~ 4595325 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 1545495 9784623 ~ 9854099 (-)
G89690 zyx,LOC108428910 other upstream 1655697 9894825 ~ 9901700 (-)
G89708 gapdh,LOC107550818 other upstream 1722154 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 1772689 10011817 ~ 10042853 (-)
G89751 NA other upstream 1984392 10223520 ~ 10224663 (-)

Expression


Co-expression Network