RNA id: TU119896


Basic Information

Item Value
RNA id TU119896
length 397
lncRNA type inter_gene
GC content 0.52
exon number 4
gene id G89135
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8385432 ~ 8389028 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACACACCAAGCGTCGAGACGGCTTACGCAGCGAGTCAGTCATCTTCCCAGGGAAGCTCTTCCAGAAGTGTAGTGTGTACTCGgcctccttcctcttcctcttgagAAGAAGAACCAGCGACTCATACTTGGAACAGACATCCTGCAGTTTCTGATAGTCCATGGAATTCACCTCATAGCATGTTGCTAGCTTAAGCAGTAGATGGCCATACTCGTGGAGATGACGGACAGGGAGGTAAAAGAGATGAGACAGAATGTCAGCCAGCATCGCCCCATCTTCACAACCCTCAGATAACTTCTGCACAACCTCTGCTCCCTTCCCAAACACATCCTGGCAAGGTCTGACGAGAGCCTGAAAGCCTCCCATCACCAGCAGGTTGCCTACACTGGCACAGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119813 lncRNA downstream 110568 8274662 ~ 8274864 (-) True G89074
TU119799 lncRNA downstream 140888 8242350 ~ 8244544 (-) False G89067
TU119798 lncRNA downstream 142112 8242350 ~ 8243320 (-) True G89067
TU119753 lncRNA downstream 303842 8081373 ~ 8081590 (-) True G89038
TU119750 lncRNA downstream 305652 8079064 ~ 8079780 (-) True G89036
TU119894 lncRNA upstream 8512 8397540 ~ 8404379 (-) True G89134
TU119904 lncRNA upstream 30649 8419677 ~ 8422791 (-) True G89141
TU119938 lncRNA upstream 83546 8472574 ~ 8473740 (-) True G89169
TU119945 lncRNA upstream 119859 8508887 ~ 8513839 (-) True G89176
TU119948 lncRNA upstream 148807 8537835 ~ 8538523 (-) True G89179
XM_007248874.3 mRNA downstream 29755 8301794 ~ 8355677 (-) False cdk15
XM_022673458.1 mRNA downstream 53354 8301794 ~ 8332078 (-) True cdk15
XM_022673460.1 mRNA downstream 61812 8301794 ~ 8323620 (-) False cdk15
XM_007248875.3 mRNA downstream 118089 8262184 ~ 8267343 (-) True LOC103024641
XM_007248877.3 mRNA downstream 146304 8230069 ~ 8239128 (-) True nop58
XM_007248899.2 mRNA upstream 71970 8460998 ~ 8478571 (-) True LOC103032246
XM_007248859.3 mRNA upstream 135407 8524435 ~ 8536857 (-) True LOC103046974
XM_007248860.3 mRNA upstream 135407 8524435 ~ 8536856 (-) False LOC103046974
XM_007248861.3 mRNA upstream 152447 8541475 ~ 8544605 (-) True nudt15
XM_007248856.3 mRNA upstream 306342 8695370 ~ 8733887 (-) True LOC103046152
TU119448 other downstream 1142862 7241711 ~ 7242570 (-) True G88789
TU119427 other downstream 1267306 7117661 ~ 7118126 (-) True G88779
TU119041 other downstream 3790107 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 3819228 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 4693968 3606470 ~ 3691464 (-) False lyrm4
TU120441 other upstream 1413743 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 1505797 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 1572254 9961282 ~ 9964606 (-) True G89708
TU120687 other upstream 1650529 10039557 ~ 10042853 (-) False LOC103025178
TU120738 other upstream 1834492 10223520 ~ 10224663 (-) True G89751

Expression Profile