RNA id: XM_007248899.2


Basic Information

Item Value
RNA id XM_007248899.2
length 1633
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC103032246
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8460998 ~ 8478571 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTGTGCCTAAATTGACAGGTGGGGCTGTTGTTAAGTGACTCATGAGAGTCTCTTTAAATGTGCTCTGTTAGGGTTGGTGTAAAGCTTTGTTTAACTAGGTTAAAGACAGTTAGACAGTAGAAGATGTTGAATGTTgttataataacattatttaGCTCGTTTGTTGCTTTCTGTAGAGCTCAGGAGCAGAAGGACCCGTGGCAGATGGCCAGAGGTAACAGTTTACCCAGTTTTCCACAGCAGCTCCGACAGGACACGATACAGCCCGGCGGCTACCCGCTCCTCCAGTCCTCCCCGAACAGCGTGTATTATCAGCCCCCAGCCCAGCAGCAGCTCCCAGACCGCGGGGACCCGCAGCGCTGTGCGGTGGAGGACTCCTCCCGGGTGGAGTGCGGGGAGCCCGGGATCAGCCCGGCTGACTGCGAGGCCCTGGAGTGCTGTTACGATACTCGACAGTATATTCGAGCTCCTGATGGACCCCTGTGCTACTATGGAAAAACGGTCACTGTACAGTGCACCAAAGACGGGCAGTTTGTGGTGGTTGTGGCCAGAGACACCACCGTACCTCGGATCAGCCTGGACAACATCAGCCTGCTGGAGGCCGGTGGAGAACTTTGCACTGCCATCGACAGTAATATTGACTTCGCCATCTACCAGTTTCCAGTGACGACCTGTGGGACAAGGGCGAAGGTTGATGGTGATTATGTTGTTTATGAGAACATGATGGCGTCCTCATATGAAGTTGGATTCGGTCAACATGGTGCCATCACAAGGGACAGCTCGTTTGAGCTAACTTTCCAGTGTAGATATCTGGCTACAGCAGTGGAGGCTTTAAGGGTGGATGTGAACACTGTTCCTGCACCAGCTCCAGTGTTTCAGCAGGGTCCCCTACGAGTGGACCTCAGGCTTGCTAATGGCATCTGTGTCACTAAAGGATGTTCTGATGTGGACATATACAGCTCCTACTACACTGAGGCAGATTACCCTGTCACCAAGGCACTGAGGGAACCAGTGTATGTGGAGGTGCGCATGCTGGAGAGAACAGACCCGAGCATCGCCCTGGTGCTGAGCCACTGCTGGGCCACTTCCACCCCAAATCCATTAAGCCTGACTCAGTGGGACCTGCTGGTTAATGGGTGCCCGTATGAAGATGACCGTTATCAGACCACTGTGATTCCAGTTGGCCCCTCTTCTGGCCTGCAGTACCCAACCCACTACAAGCGCTTTGTTGTGGAGATGTTTGCCTTCGTGGACCAAACATCCCTCATTCCACAACAGGAACAGATCTTCATCCACTGTACCACAGCAGTGTGTCAAGTCTCTGCTCTGGACACCTGTGAACCAAGTTGTGGCAGAACAAAGAGAGCAGTTTCAACAACACAAGATCTAGAGAAGGTCCTAGTGTCCAGTGAGGAGGTCATCCTTCTTTCTGACCTGCCAGTTTCAGCTAAAAGCCGAGGGGACAGTAATGAAGGGTCTTGGGATTCAAGCTTTGGTCTGGTTGGAGTAGCTGCACTGGCTGTGTTGAGCATCTGTGGACTGCTTactgctgctctctgctggagaCGGCGGTTAAAACCTCGTCCTCTTCAGACAACAAGACTATGATGAATAAAGTTGTCTTGTGTCAAT

Function

GO: NA

KEGG:

id description
K19926 ZP1; zona pellucida sperm-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119904 lncRNA downstream 38207 8419677 ~ 8422791 (-) True G89141
TU119894 lncRNA downstream 56619 8397540 ~ 8404379 (-) True G89134
TU119896 lncRNA downstream 71970 8385432 ~ 8389028 (-) True G89135
TU119813 lncRNA downstream 186134 8274662 ~ 8274864 (-) True G89074
TU119799 lncRNA downstream 216454 8242350 ~ 8244544 (-) False G89067
TU119945 lncRNA upstream 30316 8508887 ~ 8513839 (-) True G89176
TU119948 lncRNA upstream 59264 8537835 ~ 8538523 (-) True G89179
TU120087 lncRNA upstream 471397 8949968 ~ 8950288 (-) True G89288
TU120102 lncRNA upstream 529532 9008103 ~ 9018428 (-) True G89299
TU120130 lncRNA upstream 602711 9081282 ~ 9082106 (-) True G89322
XM_007248874.3 mRNA downstream 105321 8301794 ~ 8355677 (-) False cdk15
XM_022673458.1 mRNA downstream 128920 8301794 ~ 8332078 (-) True cdk15
XM_022673460.1 mRNA downstream 137378 8301794 ~ 8323620 (-) False cdk15
XM_007248875.3 mRNA downstream 193655 8262184 ~ 8267343 (-) True LOC103024641
XM_007248877.3 mRNA downstream 221870 8230069 ~ 8239128 (-) True nop58
XM_007248859.3 mRNA upstream 45864 8524435 ~ 8536857 (-) True LOC103046974
XM_007248860.3 mRNA upstream 45864 8524435 ~ 8536856 (-) False LOC103046974
XM_007248861.3 mRNA upstream 62904 8541475 ~ 8544605 (-) True nudt15
XM_007248856.3 mRNA upstream 216799 8695370 ~ 8733887 (-) True LOC103046152
XM_022673472.1 mRNA upstream 260314 8738885 ~ 8793825 (-) False LOC103046449
TU119448 other downstream 1218428 7241711 ~ 7242570 (-) True G88789
TU119427 other downstream 1342872 7117661 ~ 7118126 (-) True G88779
TU119041 other downstream 3865673 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 3894794 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 4769534 3606470 ~ 3691464 (-) False lyrm4
TU120441 other upstream 1324200 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 1416254 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 1482711 9961282 ~ 9964606 (-) True G89708
TU120687 other upstream 1560986 10039557 ~ 10042853 (-) False LOC103025178
TU120738 other upstream 1744949 10223520 ~ 10224663 (-) True G89751

Expression Profile