G47041


Basic Information

Item Value
gene id G47041
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10237327 ~ 10237529 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU53485
CAAAGTCTACAAAACCTTAATGCTGTCACGGTTATGTTTAGTTTCTTCCCCCGGTTTCACAGACAAGGCTTAATCCTATCTCAGACTAAAATTCATGTTTGAGCTGTTTTAACTGAAAGCAACTTGTACTAACATATCTTAAAATATGTCAGTGCCATTGTTATGTCTCAAGATGAACACCGGTAATGTTTTTTTTCCTAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53485 True 203 lncRNA 0.41 1 10237327 10237529

Neighbor

gene id symbol gene type direction distance location
CI01000006_10177090_10192651 NA coding upstream 43808 10177090 ~ 10193519 (+)
CI01000006_09998680_10008491 LHX5 coding upstream 228279 9998680 ~ 10009048 (+)
CI01000006_09918611_09921465 MZT2B coding upstream 315534 9918611 ~ 9921793 (+)
CI01000006_09910027_09913958 NA coding upstream 323223 9909370 ~ 9914104 (+)
CI01000006_09891107_09897750 NA coding upstream 339564 9891107 ~ 9897763 (+)
CI01000006_10363884_10364804 NA coding downstream 126267 10363796 ~ 10365571 (+)
CI01000006_10518326_10566504 SFSWAP coding downstream 280797 10518326 ~ 10566504 (+)
CI01000006_10574971_10578629 NA coding downstream 337079 10574608 ~ 10578964 (+)
CI01000006_10593624_10605226 NA coding downstream 355715 10593244 ~ 10606273 (+)
CI01000006_10707037_10743311 MMP17, MMP17A coding downstream 469415 10706944 ~ 10743594 (+)
G46754 NA non-coding upstream 6815 10230283 ~ 10230512 (+)
G46750 NA non-coding upstream 9201 10227913 ~ 10228126 (+)
G46741 NA non-coding upstream 26210 10210903 ~ 10211117 (+)
G46652 NA non-coding upstream 80025 10156579 ~ 10159251 (+)
G46717 NA non-coding upstream 112316 10121321 ~ 10125011 (+)
G47054 NA non-coding downstream 27094 10264623 ~ 10268634 (+)
G47062 NA non-coding downstream 39595 10277124 ~ 10277368 (+)
G47079 NA non-coding downstream 66423 10303952 ~ 10304186 (+)
G47102 NA non-coding downstream 105784 10343313 ~ 10360367 (+)
G47106 NA non-coding downstream 165745 10403274 ~ 10481243 (+)
G45416 NA other upstream 1402630 8818814 ~ 8834697 (+)
G45355 NA other upstream 2024939 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 2037182 8197881 ~ 8200145 (+)
G45336 NA other upstream 2215376 8019342 ~ 8021951 (+)
G47145 NA other downstream 247829 10485358 ~ 10511806 (+)
G47159 NA other downstream 1178700 11416229 ~ 11521703 (+)
G47318 NA other downstream 1386738 11624267 ~ 11638252 (+)
G48094 NA other downstream 2040091 12277620 ~ 12279541 (+)
G48081 NA other downstream 2139477 12377006 ~ 12384827 (+)

Expression


Co-expression Network