G47252


Basic Information

Item Value
gene id G47252
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10825660 ~ 10825933 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU53748
ACAGCAACACTCAATCGTGTTTTGAATGATTCAGTGTTTTGAACAAATCGTTTGAGTCAAAGATTCAATGACCCATTCACAAACATCTGTCTCATTCTTGATGAATCGGCCGTTTGAACGAATCGTGAATGAACGACTCAGTGACTCGCTTAATAAAACCGCTTATCACCTGCATTTGCGCTCACTATCGACAAACCAATCAAATTTGTTCAAAACCTTTTTTTTTAAATCAGTCCAAACACATTTTAATTTTATTCAGGAGTTATGTATATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53748 True 274 lncRNA 0.37 1 10825660 10825933

Neighbor

gene id symbol gene type direction distance location
CI01000006_10807071_10810100 GLULC coding upstream 15459 10806082 ~ 10810201 (+)
CI01000006_10790977_10797880 NA coding upstream 27780 10790977 ~ 10797880 (+)
CI01000006_10787582_10790960 NA coding upstream 34700 10787582 ~ 10790960 (+)
CI01000006_10783751_10785116 PHPT1 coding upstream 40271 10783751 ~ 10785389 (+)
CI01000006_10775003_10781543 NA coding upstream 44003 10775003 ~ 10781657 (+)
CI01000006_10828974_10834485 NA coding downstream 2906 10828839 ~ 10834540 (+)
CI01000006_10837154_10838610 NA coding downstream 10639 10836572 ~ 10839283 (+)
CI01000006_10856614_10870840 ARRDC1B, ARRDC1 coding downstream 30356 10856289 ~ 10871282 (+)
CI01000006_10901059_10906327 EHMT1, EHMT1B coding downstream 75126 10901059 ~ 10906567 (+)
CI01000006_10911878_10918372 NA coding downstream 85643 10911576 ~ 10918979 (+)
G47175 NA non-coding upstream 20607 10801586 ~ 10805053 (+)
G47213 NA non-coding upstream 153068 10664966 ~ 10672592 (+)
G47220 NA non-coding upstream 209642 10615325 ~ 10616018 (+)
G47218 NA non-coding upstream 258361 10566654 ~ 10567299 (+)
G47217 NA non-coding upstream 307738 10517711 ~ 10517922 (+)
G47194 NA non-coding downstream 278728 11104661 ~ 11185170 (+)
G47184 NA non-coding downstream 461553 11287486 ~ 11290495 (+)
G47164 NA non-coding downstream 488590 11314523 ~ 11321670 (+)
G47163 NA non-coding downstream 561270 11387203 ~ 11392950 (+)
G47298 NA non-coding downstream 588823 11414756 ~ 11415179 (+)
G47145 NA other upstream 313854 10485358 ~ 10511806 (+)
G46652 NA other upstream 666409 10156579 ~ 10159251 (+)
G45416 NA other upstream 1990963 8818814 ~ 8834697 (+)
G45355 NA other upstream 2613272 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 2625515 8197881 ~ 8200145 (+)
G47159 NA other downstream 590296 11416229 ~ 11521703 (+)
G47318 NA other downstream 798334 11624267 ~ 11638252 (+)
G48094 NA other downstream 1451687 12277620 ~ 12279541 (+)
G48081 NA other downstream 1551073 12377006 ~ 12384827 (+)

Expression


Co-expression Network