gpx2 (gpx2,LOC102306767,LOC100700650,LOC103363131)


Basic Information

Item Value
gene id gpx2
gene name gpx2,LOC102306767,LOC100700650,LOC103363131
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1438465 ~ 1441301 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104404
GTGTAGTGGAGGACCAGTGTGGATAATGACGTTCATAGCCAAGACCTTCTACGACCTGCGTGCTACAACGCTGGAGGGAGAATCCGTCGATTTTAATGTGTTCAGAGGACGGGTGGTGCTGATTGAGAATGTGGCATCCCTCTGAGGTACGACCACCCGGGACTACAGCCAGCTCAACCAGCTCCAGAGCAGGTACCCACACCGGCTGGTGGTCCTGGGCTTCCCCTGTAACCAGTTTGGCTACCAGGAAAACTGCACCAATGGAGAAATCCTGAACTCCCTGAAGCACGTGAGGCCAGGAGCAGGATACGAACCTGGATTCACCATTTTCGAGAAGTGTGACGTGAATGGGGTCAACACTCACCCCGTCTTCGCCTACCTGAAGGACAAACTCCCATACCCTGACGACGACCCGGTCTCCTTCGTGCAGGACCCCAAATTCCTTGTGTGGAGCCCCGTCAGCCGGACTGACGTCTCTTGGAATTTTGAGAAGTTCCTCATTGGCCCTGAAGGCGAGCCGTTCAAGAGATACAGCAAAAAGTTCGAGACCATTGCCATCGAACCCGACATCCAGAGATTACTGAGATTGACCAAgaactaaccaaccaactaactaaccagccatctaaacatctaaacatctgaACATCTGAACACCTGAACATCTAACTCAGGGGTCTCCAATCTTATCAGCAAAAAGGgcagatataaaataatatcatgatatttcctggtattttcgcaataacaaaaatctgaatttcaagaatacactactgcaacaaaatgaaaaaaaatatatatatcatcgcatacaatatgatatggcacacccctaattgagatattaaaaaatgaaaagaattaaattaaaataaatgaaaacaaatcagatttttaacagTTAATTATACAGGATgttgtagtaataataataatgcactccaaatatctccatatatccaggattaaggtaaaataaatgatactggacagagaTCTCTATTACTCTTtagtagatatacagctctgaaaaaaaaatctaattcagtttctctgattttgctatttatttttatttattttattctataaactatggacaacatttctaccaaattccaattaattgtcatttagagcatttatttgcagaaaatgagaaatggctgaaataacacaaacaatgcaaagaaaacaagttaatattcataaagttttaagagttcagaaataatcaatatttggtggaataattatTAGGtgaaagttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattttat
>XM_022672567.1
AGTactttacaatttatttttacaaggGTAGACTGTGTTCAGTTTGCTCATTTTGAACGTTGTAcccatctgattttttttattgacttatTTTAAGCTACATTTCATTTTCCCTCCCATAGAAAAGCCTGGTTTGTGTGTAAAGGCTGGTGCAGGTTTACACACTAAAACCTGAGCTGGCGTACCTCTGGCTTTTCACCACCAGCTCGTATCAGGTATCACTCGTATATCTGCTTTCTTCAGAGTCACTGGATACCCCAGCTTTATAGTTGAGGCTAGGCAACCAGGAGGACCTGCGTGACAGTTGGGAAGAGACAGTGTAGTGGAGGACCAGTGTGGATAATGACGTTCATAGCCAAGACCTTCTACGACCTGCGTGCTACAACGCTGGAGGGAGAATCCGTCGATTTTAATGTGTTCAGAGGACGGGTGGTGCTGATTGAGAATGTGGCATCCCTCTGAGGTACGACCACCCGGGACTACAGCCAGCTCAACCAGCTCCAGAGCAGGTACCCACACCGGCTGGTGGTCCTGGGCTTCCCCTGTAACCAGTTTGGCTACCAGGAAAACTGCACCAATGGAGAAATCCTGAACTCCCTGAAGCACGTGAGGCCAGGAGCAGGATACGAACCTGGATTCACCATTTTCGAGAAGTGTGACGTGAATGGGGTCAACACTCACCCCGTCTTCGCCTACCTGAAGGACAAACTCCCATACCCTGACGACGACCCGGTCTCCTTCGTGCAGGACCCCAAATTCCTTGTGTGGAGCCCCGTCAGCCGGACTGACGTCTCTTGGAATTTTGAGAAGTTCCTCATTGGCCCTGAAGGCGAGCCGTTCAAGAGATACAGCAAAAAGTTCGAGACCATTGCCATCGAACCCGACATCCAGAGATTACTGAGATTGACCAAgaactaaccaaccaactaactaaccagccatctaaacatctaaacatctgaACATCTGAACACCTGAACATCTAACTCAGGGGTCTCCAATCTTATCAGCAAAAAGGgcagatataaaataatatcatgatatttcctggtattttcgcaataacaaaaatctgaatttcaagaatacactactgcaacaaaatgaaaaaaaatatatatat

Function

symbol description
gpx2 Is expressed in otic sensory epithelium. Orthologous to human GPX2 (glutathione peroxidase 2).

NR:

description
glutathione peroxidase 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104404 True 1422 lncRNA 0.40 2 1438465 1440984
XM_022672567.1 False 1123 mRNA 0.46 2 1439081 1441301

Neighbor

gene id symbol gene type direction distance location
LOC103039408 LOC108441822,LOC108269630 coding downstream 72691 1348948 ~ 1365774 (-)
LOC103043117 LOC108441832,LOC108269613 coding downstream 95413 1329338 ~ 1343052 (-)
grhl1 grhl1,LOC108269933,LOC107752795 coding downstream 173051 1234345 ~ 1265414 (-)
LOC103038386 NA coding downstream 219820 1213559 ~ 1218645 (-)
abraxas2 fam175b coding downstream 609450 821625 ~ 829015 (-)
LOC103039104 rab15,LOC103039104,LOC108441824,LOC105889812,LOC107671782,LOC107668202,LOC106608154 coding upstream 2026 1443327 ~ 1447735 (-)
LOC103037189 LOC103037189,LOC108269635,LOC108441826,LOC106588122,LOC106511380,LOC100701192 coding upstream 7499 1448800 ~ 1454590 (-)
LOC107197727 NA coding upstream 21937 1463238 ~ 1466399 (-)
LOC103038790 LOC108430634 coding upstream 40443 1481744 ~ 1497343 (-)
inafm2 inafm2 coding upstream 132959 1574260 ~ 1577343 (-)
G77422 NA non-coding downstream 91949 1345354 ~ 1346516 (-)
G77421 NA non-coding downstream 93175 1344056 ~ 1345290 (-)
G77361 ywhaqb,LOC108436740,LOC107733143,LOC107752793,LOC107592764,LOC107697768,LOC105896734 non-coding downstream 120342 1278158 ~ 1318123 (-)
G77344 NA non-coding downstream 205048 1231285 ~ 1233417 (-)
G77356 NA non-coding downstream 226742 1211368 ~ 1211723 (-)
LOC103036887 NA non-coding upstream 75643 1516944 ~ 1519955 (-)
G77435 NA non-coding upstream 101902 1543203 ~ 1551699 (-)
G77440 NA non-coding upstream 119648 1560949 ~ 1563957 (-)
G77442 NA non-coding upstream 132023 1573324 ~ 1573546 (-)
G77586 NA non-coding upstream 168283 1609584 ~ 1650592 (-)
LOC103042803 LOC108441829,LOC108269607,LOC103136210 other downstream 7221 1368097 ~ 1431244 (-)
G77362 NA other downstream 164295 1273737 ~ 1274170 (-)
lin52 lin52,LOC107594798 other downstream 712235 708644 ~ 726230 (-)
ivd ivd,LOC107719458 other downstream 902418 459202 ~ 536047 (-)
G77111 NA other downstream 1055180 380700 ~ 383285 (-)
LOC103034803 ppp1r14d,LOC105908342,LOC107678771,LOC108269636,LOC101077163 other upstream 273219 1714520 ~ 1764531 (-)
srp14 srp14 other upstream 412343 1853644 ~ 1860409 (-)
LOC111193168 NA other upstream 601658 2042959 ~ 2047241 (-)
gchfr gchfr other upstream 709487 2150788 ~ 2155348 (-)
G77656 NA other upstream 749012 2190313 ~ 2190653 (-)

Expression


Co-expression Network