bmf (bmf)


Basic Information

Item Value
gene id bmf
gene name bmf
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3175798 ~ 3206686 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104917
AGGTGGAGAGTAGAGGAGCTGAACGGTGCGGAGCGAAGGGAACAGAGGAAAAAAcggagagaacagagagaacagaggagAAAACGGAGAGAGAAGTGCTATAGCAAGAAGTACTGGACTTAAAGGACTTTAAACTAGGACAACCAGAGgtGGGGAGCGTGGAAGGCCCTGCTCATGGACGATGAGGAGGATGATGTGTTCGTTACGGATCCAGAGCCTTGGCGTTCCCCGATCAGTGTGATAAAGCAGGAGGAGCGTGGCACACAGACTCCAGGGCGGCCGCCGGCTCGGACCAATGGCATGCTGCCCTGCGGAATATCCGAGGAGCCAAGACGCCTCTTCTACGGTAAGCCTGGCctgaccagagagagagaaggag
>XM_007257920.3
tttatatagctaGTTGTTAAGCCATTCAAGTAGTAACCCGTTTACATGAGGATAGATTTagcctttttaattttaagctaACAGCTCATTCACACTGCGCATTTATATTATTCGGTTTAAATGTAATAGGTCGTTAATTAAACTCACAGAAATGAGAATACCTGCCTGCAGAAGGACAGAAGCAGTAAGAGCAGCGCTgtaacacactgtaaactgcacgCTGTCAGGTTTGACAGCTCGCCGCGCGTGTAGTTCAACCGGGCTGCTGTTCTTCCCGCCGCTCCGGGAATTTCCCTTCCACGTGTCTGATAAAAAGGGGGCGGGATCATAACAAAGACACGTGACGGGTCTTAAGACGAGCGTGTGGTCGGCGCTGGTGTTACGTATCCCGGGGGGCGGGGCCTGCTGCTGTCGTAGTTGGAAATGAGGCTCAGCGGCTGGAGGCGAAGATCAGAATGAAGACAGAGGTGGAGAGTAGAGGAGCTGAACGGTGCGGAGCGAAGGGAACAGAGGAAAAAAcggagagaacagagagaacagaggagAAAACGGAGAGAGAAGTGCTATAGCAAGAAGTACTGGACTTAAAGGACTTTAAACTAGGACAACCAGAGgtGGGGAGCGTGGAAGGCCCTGCTCATGGACGATGAGGAGGATGATGTGTTCGTTACGGATCCAGAGCCTTGGCGTTCCCCGATCAGTGTGATAAAGCAGGAGGAGCGTGGCACACAGACTCCAGGGCGGCCGCCGGCTCGGACCAATGGCATGCTGCCCTGCGGAATATCCGAGGAGCCAAGACGCCTCTTCTACGGTAGTGCAGGACTGTTATTACTGGCACCGTCTGCCCGTTCTGAACGCGTCGGGGACGCCATGTTTCGGGAGGAGCATCGAGCCGTTGAGCCTCGGCGGCGGCCGGCGCACAGCGTGGAGGCCCGTATCGGACAGAAGCTCCAGATGATCGGAGACCAGTTTTATCAAGAGCACATGCTGCAACACAGAAACCAAAGGAACCAGCAGCCGCTTTGGTTGCGCTTGGCGTCGGCGCTCTACACGCTCCTGTTCGAGAGGGAGCCGGCGGCTCACGGGAGGCGAGAGGACCGGAGGTGAGATGGCCACCTGgaaaaaactttacaaaaactGCCACCTTTCGTCCCGGCTTCATCCCGAAGCAGGGCGCCTAATGGCACTGTCTGATTTTTGACACGGGTTTTCCGGGAGAggagggaaaaataaaaaaaaacgagacGGAAGGCGAACGTCTCCGCGGGACGGAGGCGCCGGTTTTTACAggatctttcttttcttttttcttcctcccCCCTCAAGAAGATGCCATGGTGTTCACCAGACTCTTTGACAGGAATATTTTCATAAGGAACTTTGTTGAGGTATTTTGTACAGTATGTGCTGTCGTCTCTGTTTCGTTTCATTTCGTTTCGTTTCGTTTGCACTTCCACTCATGTAAGTTTTGAACAACCTCCACGCGTCCTGGGAATGCCTTATCGTCTCCAGCCACTGCAGAAAGaacgtctaaaaaaaaaaaaaaaaaaaaagtgtggactaaa
>XM_022672601.1
gtatatttatatagctaGTTGTTAAGCCATTCAAGTAGTAACCCGTTTACATGAGGATAGATTTagcctttttaattttaagctaACAGCTCATTCACACTGCGCATTTATATTATTCGGTTTAAATGTAATAGGTCGTTAATTAAACTCACAGAAATGAGAATACCTGCCTGCAGAAGGACAGAAGCAGTAAGAGCAGCGCTgtaacacactgtaaactgcacgCTGTCAGGTTTGACAGCTCGCCGCGCGTGTAGTTCAACCGGGCTGCTGTTCTTCCCGCCGCTCCGGGAATTTCCCTTCCACGTGTCTGATAAAAAGGGGGCGGGATCATAACAAAGACACGTGACGGGTCTTAAGACGAGCGTGTGGTCGGCGCTGGTGTTACGTATCCCGGGGGGCGGGGCCTGCTGCTGTCGTAGTTGGAAATGAGGCTCAGCGGCTGGAGGCGAAGATCAGAATGAAGACAGAGGTGGAGAGTAGAGGAGCTGAACGGTGCGGAGCGAAGGGAACAGAGGAAAAAAcggagagaacagagagaacagaggagAAAACGGAGAGAGAAGTGCTATAGCAAGAAGTACTGGACTTAAAGGACTTTAAACTAGGACAACCAGAGGACAAGAGTGTCCTGATGTAGGAAAAGCTAAAAGTTACCTCTTTTGGACCAGCAATGTTGGAACCAAGTTAAGgtGGGGAGCGTGGAAGGCCCTGCTCATGGACGATGAGGAGGATGATGTGTTCGTTACGGATCCAGAGCCTTGGCGTTCCCCGATCAGTGTGATAAAGCAGGAGGAGCGTGGCACACAGACTCCAGGGCGGCCGCCGGCTCGGACCAATGGCATGCTGCCCTGCGGAATATCCGAGGAGCCAAGACGCCTCTTCTACGGTAGTGCAGGACTGTTATTACTGGCACCGTCTGCCCGTTCTGAACGCGTCGGGGACGCCATGTTTCGGGAGGAGCATCGAGCCGTTGAGCCTCGGCGGCGGCCGGCGCACAGCGTGGAGGCCCGTATCGGACAGAAGCTCCAGATGATCGGAGACCAGTTTTATCAAGAGCACATGCTGCAACACAGAAACCAAAGGAACCAGCAGCCGCTTTGGTTGCGCTTGGCGTCGGCGCTCTACACGCTCCTGTTCGAGAGGGAGCCGGCGGCTCACGGGAGGCGAGAGGACCGGAGGTGAGATGGCCACCTGgaaaaaactttacaaaaactGCCACCTTTCGTCCCGGCTTCATCCCGAAGCAGGGCGCCTAATGGCACTGTCTGATTTTTGACACGGGTTTTCCGGGAGAggagggaaaaataaaaaaaaacgagacGGAAGGCGAACGTCTCCGCGGGACGGAGGCGCCGGTTTTTACAggatctttcttttcttttttcttcctcccCCCTCAAGAAGATGCCATGGTGTTCACCAGACTCTTTGACAGGAATATTTTCATAAGGAACTTTGTTGAGGTATTTTGTACAGTATGTGCTGTCGTCTCTGTTTCGTTTCATTTCGTTTCGTTTCGTTTGCACTTCCACTCATGTAAGTTTTGAACAACCTCCACGCGTCCTGGGAATGCCTTATCGTCTCCAGCCACTGCAGAAAGaacgtctaaaaaaaaaaaaaaaaaaaaagtgtggactaaa

Function

symbol description
bmf Involved in cellular response to UV; negative regulation of autophagy; and positive regulation of apoptotic process. Acts upstream of or within anoikis. Predicted to be located in actin cytoskeleton and cytoplasm. Predicted to be part of myosin complex.

NR:

description
bcl-2-modifying factor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104917 False 379 TUCP 0.56 2 3197129 3206216
XM_007257920.3 False 1565 mRNA 0.52 4 3175798 3206681
XM_022672601.1 True 1643 mRNA 0.51 5 3175798 3206686

Neighbor

gene id symbol gene type direction distance location
LOC103025229 acta1,act2,LOC105024319,LOC108430668,LOC102689871 coding downstream 271150 2900144 ~ 2904648 (-)
LOC103024903 LOC108430667 coding downstream 280117 2881109 ~ 2895681 (-)
LOC103025537 LOC108430628,LOC108269477,LOC107745352,LOC107711907 coding downstream 300162 2869496 ~ 2875636 (-)
LOC111193124 LOC108270491,LOC108234815 coding downstream 423542 2673416 ~ 2752256 (-)
LOC103025843 LOC103025843,LOC108430663 coding downstream 669925 2478136 ~ 2505873 (-)
ankrd9 NA coding upstream 95473 3302159 ~ 3303567 (-)
strn3 strn3,LOC106611207,LOC107590905 coding upstream 674633 3881319 ~ 3909337 (-)
hectd1 hectd1,LOC107582380,LOC107733112,LOC107697712,LOC107719534,LOC107694830,LOC100380626 coding upstream 710970 3917656 ~ 3952193 (-)
heatr5a heatr5a,LOC108412624,LOC107697711,LOC107733168 coding upstream 749640 3956326 ~ 3991775 (-)
mis18bp1 NA coding upstream 787874 3994560 ~ 4006610 (-)
G77779 NA non-coding downstream 69213 3106385 ~ 3106585 (-)
G77777 NA non-coding downstream 84170 3000586 ~ 3091628 (-)
G77755 NA non-coding downstream 311149 2863844 ~ 2864649 (-)
G77749 NA non-coding downstream 366032 2713161 ~ 2809766 (-)
G77752 NA non-coding downstream 408500 2767046 ~ 2767298 (-)
G77801 NA non-coding upstream 6243 3212929 ~ 3213153 (-)
G77888 tecpr2 non-coding upstream 64070 3270756 ~ 3284677 (-)
G77891 NA non-coding upstream 89662 3296348 ~ 3297328 (-)
G77894 rcor1,LOC107719500,LOC107590914,LOC107733187 non-coding upstream 103734 3310420 ~ 3318565 (-)
G77902 traf3,LOC107719479,LOC107697656,LOC107590913 non-coding upstream 149844 3356530 ~ 3359703 (-)
LOC103029757 LOC108430670,LOC108269994 other downstream 131035 2964024 ~ 3044763 (-)
G77656 NA other downstream 985145 2190313 ~ 2190653 (-)
gchfr gchfr other downstream 1020450 2150788 ~ 2155348 (-)
LOC111193168 NA other downstream 1128557 2042959 ~ 2047241 (-)
srp14 srp14 other downstream 1315389 1853644 ~ 1860409 (-)
G77892 NA other upstream 90896 3297582 ~ 3348989 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other upstream 438411 3645097 ~ 3714357 (-)
G78023 scfd1 other upstream 627876 3834562 ~ 3840570 (-)
G78083 NA other upstream 838748 4045434 ~ 4206384 (-)
G78297 kdm1a other upstream 1978106 5184792 ~ 5186358 (-)

Expression


Co-expression Network