Gene
RNA
| Item | Value |
|---|---|
| gene id | G48571 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 12653629 ~ 12653890 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: leucine-rich repeat-containing protein C10orf11 homolog isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU55239 | True | 262 | lncRNA | 0.33 | 1 | 12653629 | 12653890 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_12647432_12651091 | NA | coding | downstream | 2538 | 12647003 ~ 12651091 (-) |
| CI01000006_12583905_12591335 | GTF3C5 | coding | downstream | 62294 | 12583784 ~ 12591335 (-) |
| CI01000006_12569291_12581457 | CELL, CEL.2, CEL.1 | coding | downstream | 71142 | 12569205 ~ 12582487 (-) |
| CI01000006_12550833_12565605 | NA | coding | downstream | 87244 | 12550653 ~ 12566385 (-) |
| CI01000006_12520122_12540383 | GRIN1, GRIN1A | coding | downstream | 113246 | 12519971 ~ 12540383 (-) |
| CI01000006_12670692_12674459 | NA | coding | upstream | 16802 | 12670692 ~ 12674459 (-) |
| CI01000006_12677322_12678268 | NA | coding | upstream | 23272 | 12677162 ~ 12678268 (-) |
| CI01000006_12697606_12714750 | AGXT2 | coding | upstream | 43716 | 12697606 ~ 12714750 (-) |
| CI01000006_12718517_12732483 | PRLR, PRLRA | coding | upstream | 64496 | 12718386 ~ 12733092 (-) |
| CI01000006_12853718_12865868 | NA | coding | upstream | 199791 | 12853681 ~ 12865868 (-) |
| G48459 | NA | non-coding | downstream | 190118 | 12462404 ~ 12463511 (-) |
| G48422 | NA | non-coding | downstream | 475435 | 12171561 ~ 12178194 (-) |
| G48490 | NA | non-coding | downstream | 493546 | 12159558 ~ 12160083 (-) |
| G48413 | NA | non-coding | downstream | 571002 | 12082243 ~ 12082627 (-) |
| G48393 | NA | non-coding | downstream | 601945 | 12051341 ~ 12051684 (-) |
| G48576 | NA | non-coding | upstream | 45582 | 12699472 ~ 12699782 (-) |
| G48577 | NA | non-coding | upstream | 46179 | 12700069 ~ 12700268 (-) |
| G48578 | NA | non-coding | upstream | 47700 | 12701590 ~ 12701857 (-) |
| G48579 | NA | non-coding | upstream | 55380 | 12709270 ~ 12709479 (-) |
| G48580 | NA | non-coding | upstream | 59265 | 12713155 ~ 12713603 (-) |
| CI01000006_12348300_12348961 | GLRX | other | downstream | 304558 | 12347180 ~ 12349383 (-) |
| CI01000006_11651067_11653761 | SMD3, SNRPD3, SNRPD3L, MGC52856 | other | downstream | 999222 | 11650363 ~ 11654424 (-) |
| G47658 | NA | other | downstream | 1620502 | 11030911 ~ 11033127 (-) |
| CI01000006_10453630_10483241 | NA | other | downstream | 2165194 | 10453613 ~ 10484006 (-) |
