G80533


Basic Information

Item Value
gene id G80533
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 14182194 ~ 14182460 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108480
cagtttctctgattttgctatttataggtatatgtttgagtaaaataaacattgttgttttattctataaactacagacaacatttctcccaaattccaaataaaaatattgtcatttagagcatatatttgcagaaaacgagaaatggctgaaatgaacaaaaaagatgcagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttttaagagttcagaaatcaatatttggtggaataaccctgttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108480 True 267 lncRNA 0.28 1 14182194 14182460

Neighbor

gene id symbol gene type direction distance location
kif11 kif11,LOC107553611,LOC104965006,LOC102789789 coding downstream 107775 14057359 ~ 14074419 (-)
slc22a15 slc22a15,LOC107676332 coding downstream 126203 14041943 ~ 14055991 (-)
LOC103026512 LOC108431645 coding downstream 362533 13808101 ~ 13819661 (-)
LOC103022962 NA coding downstream 994262 13181021 ~ 13187932 (-)
thumpd2 NA coding downstream 1031519 13139454 ~ 13150675 (-)
LOC103028326 phyhipla,LOC108431655,LOC108270363,LOC107733545,LOC107663293,LOC107671145,LOC107553031 coding upstream 354792 14537252 ~ 14566205 (-)
LOC103029905 LOC108431656 coding upstream 392088 14574548 ~ 14635052 (-)
LOC103029158 ube2d1a,LOC103029158,LOC105891213,LOC108431657,LOC108270474,LOC105911631,LOC107717106,LOC107553913,LOC107733527,LOC107663272,LOC107583697 coding upstream 455275 14637735 ~ 14646363 (-)
LOC103029061 vsx1,LOC108431637,LOC105018048 coding upstream 471761 14654221 ~ 14659392 (-)
LOC103033287 ugp2b,LOC108431667,LOC108269784,LOC107670838,LOC107744672 coding upstream 781615 14964075 ~ 15007417 (-)
G80524 NA non-coding downstream 63488 14118480 ~ 14118706 (-)
G80489 NA non-coding downstream 144149 14037809 ~ 14038045 (-)
G80485 NA non-coding downstream 169484 14012498 ~ 14012710 (-)
G80455 NA non-coding downstream 338107 13802376 ~ 13844087 (-)
G80539 NA non-coding upstream 67160 14249620 ~ 14249919 (-)
G80557 NA non-coding upstream 225343 14407803 ~ 14408520 (-)
G80610 NA non-coding upstream 322163 14504623 ~ 14506077 (-)
G80603 NA non-coding upstream 327068 14509528 ~ 14529646 (-)
G80605 NA non-coding upstream 344892 14527352 ~ 14528869 (-)
G80522 rpl13a,LOC107670882,LOC107583572,LOC107583227 other downstream 64544 14114124 ~ 14117650 (-)
LOC103028126 LOC108431632 other downstream 202444 13968605 ~ 13979750 (-)
LOC111193139 NA other downstream 225614 13955841 ~ 13956580 (-)
LOC103027799 rgs7a,LOC108431643,LOC107583631,LOC107668625,LOC107750853,LOC108269497 other downstream 262344 13826067 ~ 13919850 (-)
LOC111193198 NA other downstream 1005518 13176036 ~ 13176676 (-)
LOC103031386 banf1,LOC108431661,LOC108270073,LOC106576720,LOC104936919,LOC105900308 other upstream 543443 14725903 ~ 14728757 (-)
G80696 pygb,LOC107553065,LOC107671137 other upstream 548103 14730563 ~ 14751762 (-)
LOC103035833 LOC108431672 other upstream 1268663 15451123 ~ 15483016 (-)
LOC111193207 xdh,LOC107752765,LOC107592779,LOC107674096,LOC107733164 other upstream 2466158 16648618 ~ 16649782 (-)
G81251 sh3yl1,LOC107733179,LOC107594817,LOC107674108 other upstream 2600056 16782516 ~ 16814118 (-)

Expression


Co-expression Network