slc22a15 (slc22a15,LOC107676332)


Basic Information

Item Value
gene id slc22a15
gene name slc22a15,LOC107676332
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 14041943 ~ 14055991 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672752.1
TTACCTACGTGTACGGCAGTGGAGTTTCTGTGGCAGAAGCGGCGGACTCCAAATCCCCAAACCCCTGTGAAATGTTAAGCCCTGGACGCCTCGGTTTCCAGTATGGATTTGGAAGAGGCTTTTCTAGCTGCAGGAGAGTTCGGGCGGTACCAGAAGAGGATGATGTCTGTGCTGGTTCTGCTGCAGATCTACATGGCCTGCCAGTCCATGCTTATCGTTCTGGTGGGCGCCGTTCCAGAGTACCACACAGAGTCTGTCACCGAGAAGGGCGGAGGTGATCTGACCCAAAGTGTGGCATTCACTGAAGACTTCAGCTCCATTGTGACAGagTGGTATCTGGTGAAGCAGCAGGCGTATAAAGTGAGTCTGGCAGGGTCGCTGTTTTTTGCTGGGGTGCTGATCGGGAACGTACTCTTTGGACCACTCTCTGACAGAATCGGGAGGAAACCCGTATTTCTTACCAcGTTGTTTTTTGAGCTGCTGTTTGCGTACGGAACTGCGTTGGCACCCAACTACGAGCTATTTGCTCTGTCCCGGCTGCTGGTCGGGATGATGAATGGAGGGATGGCTCTGATTTGCTTCATCCTCTCTCAGGAATATGTGGGGAAGTCCTACTGGGCTCTGACAGgaaCGCTGACTAACATGACCTTTGCGGTGGGCATTGCTTTGTTCGCTGTGCTTGGCTACTACATCAGACAGTGGCGTAACCTAGCAACGGCTGCCAACTGTCCTGGGGTGCTGCTCTTCCTCTTCTGCATcACCCTGCCGGAGTCTCCGCGGTGGCTGTTCTCTCGAGGGCGGACGAATCAGGCCGAGCGAGTGCTGCAGAGTTTCGCTGTGAGGAACGGTAAAGGCCGGATTACTCTGAAGCTCCGGCGAACGCCCGGCTCGTCCGGCTCTGAGGTGCCCAGTCCGGGACTTCTCGTTTTAGCCACTCACTCTGTACTGCGATGCAGGACTGTGGTCCTCATGTATGTCTGgtaTGCCTGTAGTCTGGTGTATTATGGATTAACCATGAATGCAAGTGAGGATAAAGGCAACCGTTACCTCAGTGTGGCCATGTATGGACTGGTGGAGCTACCGGCCTATCCACTCTGCATTTACTTCATCAACAAGACCTGgGCAGGGAGAAGGAAGTCATTAGCCAGTTTTCTCATTCTGGCAGGGTTGTGTTGTCTTATCTCCATGTTTCTACCTGTTCAGTCAGGCTCCTGGGCGAGTGGAAGCTCTCTGGCTCTGCTGGGAAAGCTGATGGTCAGCGCTGCCTTTAACATTGTTTATGTTTACACCTCAGAGCTCTACCCCACCGTCATAAGgAATGCAGGGCTGGGTGTGTGTTCCATGTCCTGTAGGGTGGGAGGTATTTTAGCTCCATTCGTACCCAGCATGAAAGTGCTGCATGCATCGATGCCGTTCACGGTCTTCTGTCTTATTGGGGTGACGGCGGGAGCGCTGGGGCTTCTCCTTCCAGAAACACTCAATAAACCTGTGGCTGAAACCCTAGAGGAACTCCCCTCACCAGGCTACCAGCGCATGATAGAGACCCAGgTTCACCTGCTAGAGGACGACCACCTGTCCAAACGCAAAGGATCTGAAAGTGAATGAGCTTTAAAACTAAAAGTggccaaacacacaaacacgtacacacactcacaccacagtGAATTGGTAAAGAACTCTAAGCAGGCCAGTTTACTCTGAAGGAGAAGGACCAAGCTTCTAAACTCCACAATAAGGCCCATTAGTGGGGTGAAGACTGGACCAAGAAGagacacactgtgtgtgtgggtgcgtgCAGGATTGTACCAAACTGACTCAAAAGACaagaatgtgtgtgaatgtgtgttagtaTTTGGAGATGTGCCAAACCGACcgattcaaaagtttggaatatCTTGTCACGTCAATCATGGACTTCTACTGtgtggattaaaaaaatacactctaTAATATAGTTAATAAACCAACTTCAGATggttctttgagtgatgccaaaaatatatatataaattagagGGGATAACGGGGCGTAATCATGATATGTTGCCTGCAATAACAATTAAATTACGATAATATGTTTCTGTGATACTCGATATGTCACAAGAAATTTCTCTACGATATTTAATAGCATCTTTGCTAATGAAGAGGATAGAATACCCCTGAATGAGCAAATACTAggaattatagatttattactGTCAGTTTCACAAAATGTAACAACCAATATCCTATCAAtatgattatagcgccaccatgtggagtaatgaagcagcaaGTTTTGTATGTTTAATTGGGGGgcgagtcttagggagtttagagttCCTATGTTGCAAtagaaatatcaatatttgatgccacttatcaatataaataaatcgAGACGATATATCAccatatcaatatattgtcccacccttTATTCAACCCGAGATGTTGAATTTAAAGGGCCACATTAAGTGAAGCTCTTTTAAACCTTAATAAGGTttttacatatgtatatataaagccAAATGTGGTCCTTTTGATTGCAtcctcaaagaaccatttgacGCATCTTTACTTTCATTCCATTTCCAGTCAGAACAGTCACCGAGCACAAGTTCTTAATTTTTGAACAGCAGAATAAAAGGCACAAAACATCTTTTTGACAAAAA
>XM_022672754.1
tagccccGGTGTGCTACAGCGCGAGCTCTGCTCCAAAGGCTGCGGATCCAGATCcaggaaacaaaaaaatccacacCGGGTTAGTGCTCCAGCTGCACGGGCGGCTGTAATGTAGCCGGGGTGCAGTGGAGCCGCCCAGGCAGGTgaagATCTACATGGCCTGCCAGTCCATGCTTATCGTTCTGGTGGGCGCCGTTCCAGAGTACCACACAGAGTCTGTCACCGAGAAGGGCGGAGGTGATCTGACCCAAAGTGTGGCATTCACTGAAGACTTCAGCTCCATTGTGACAGagTGGTATCTGGTGAAGCAGCAGGCGTATAAAGTGAGTCTGGCAGGGTCGCTGTTTTTTGCTGGGGTGCTGATCGGGAACGTACTCTTTGGACCACTCTCTGACAGAATCGGGAGGAAACCCGTATTTCTTACCAcGTTGTTTTTTGAGCTGCTGTTTGCGTACGGAACTGCGTTGGCACCCAACTACGAGCTATTTGCTCTGTCCCGGCTGCTGGTCGGGATGATGAATGGAGGGATGGCTCTGATTTGCTTCATCCTCTCTCAGGAATATGTGGGGAAGTCCTACTGGGCTCTGACAGgaaCGCTGACTAACATGACCTTTGCGGTGGGCATTGCTTTGTTCGCTGTGCTTGGCTACTACATCAGACAGTGGCGTAACCTAGCAACGGCTGCCAACTGTCCTGGGGTGCTGCTCTTCCTCTTCTGCATcACCCTGCCGGAGTCTCCGCGGTGGCTGTTCTCTCGAGGGCGGACGAATCAGGCCGAGCGAGTGCTGCAGAGTTTCGCTGTGAGGAACGGTAAAGGCCGGATTACTCTGAAGCTCCGGCGAACGCCCGGCTCGTCCGGCTCTGAGGTGCCCAGTCCGGGACTTCTCGTTTTAGCCACTCACTCTGTACTGCGATGCAGGACTGTGGTCCTCATGTATGTCTGgtaTGCCTGTAGTCTGGTGTATTATGGATTAACCATGAATGCAAGTGAGGATAAAGGCAACCGTTACCTCAGTGTGGCCATGTATGGACTGGTGGAGCTACCGGCCTATCCACTCTGCATTTACTTCATCAACAAGACCTGgGCAGGGAGAAGGAAGTCATTAGCCAGTTTTCTCATTCTGGCAGGGTTGTGTTGTCTTATCTCCATGTTTCTACCTGTTCAGTCAGGCTCCTGGGCGAGTGGAAGCTCTCTGGCTCTGCTGGGAAAGCTGATGGTCAGCGCTGCCTTTAACATTGTTTATGTTTACACCTCAGAGCTCTACCCCACCGTCATAAGgAATGCAGGGCTGGGTGTGTGTTCCATGTCCTGTAGGGTGGGAGGTATTTTAGCTCCATTCGTACCCAGCATGAAAGTGCTGCATGCATCGATGCCGTTCACGGTCTTCTGTCTTATTGGGGTGACGGCGGGAGCGCTGGGGCTTCTCCTTCCAGAAACACTCAATAAACCTGTGGCTGAAACCCTAGAGGAACTCCCCTCACCAGGCTACCAGCGCATGATAGAGACCCAGgTTCACCTGCTAGAGGACGACCACCTGTCCAAACGCAAAGGATCTGAAAGTGAATGAGCTTTAAAACTAAAAGTggccaaacacacaaacacgtacacacactcacaccacagtGAATTGGTAAAGAACTCTAAGCAGGCCAGTTTACTCTGAAGGAGAAGGACCAAGCTTCTAAACTCCACAATAAGGCCCATTAGTGGGGTGAAGACTGGACCAAGAAGagacacactgtgtgtgtgggtgcgtgCAGGATTGTACCAAACTGACTCAAAAGACaagaatgtgtgtgaatgtgtgttagtaTTTGGAGATGTGCCAAACCGACcgattcaaaagtttggaatatCTTGTCACGTCAATCATGGACTTCTACTGtgtggattaaaaaaatacactctaTAATATAGTTAATAAACCAACTTCAGATggttctttgagtgatgccaaaaatatatatataaattagagGGGATAACGGGGCGTAATCATGATATGTTGCCTGCAATAACAATTAAATTACGATAATATGTTTCTGTGATACTCGATATGTCACAAGAAATTTCTCTACGATATTTAATAGCATCTTTGCTAATGAAGAGGATAGAATACCCCTGAATGAGCAAATACTAggaattatagatttattactGTCAGTTTCACAAAATGTAACAACCAATATCCTATCAAtatgattatagcgccaccatgtggagtaatgaagcagcaaGTTTTGTATGTTTAATTGGGGGgcgagtcttagggagtttagagttCCTATGTTGCAAtagaaatatcaatatttgatgccacttatcaatataaataaatcgAGACGATATATCAccatatcaatatattgtcccacccttTATTCAACCCGAGATGTTGAATTTAAAGGGCCACATTAAGTGAAGCTCTTTTAAACCTTAATAAGGTttttacatatgtatatataaagccAAATGTGGTCCTTTTGATTGCAtcctcaaagaaccatttgacGCATCTTTACTTTCATTCCATTTCCAGTCAGAACAGTCACCGAGCACAAGTTCTTAATTTTTGAACAGCAGAATAAAAGGCACAAAACATCTTTTTGACAAAAA

Function

symbol description
slc22a15 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC22A15 (solute carrier family 22 member 15).

NR:

description
solute carrier family 22 member 15

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
K08211 SLC22A15; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672752.1 True 2654 mRNA 0.47 12 14041943 14055991
XM_022672754.1 False 2617 mRNA 0.47 12 14041943 14055786

Neighbor

gene id symbol gene type direction distance location
LOC103026512 LOC108431645 coding downstream 222282 13808101 ~ 13819661 (-)
LOC103022962 NA coding downstream 854011 13181021 ~ 13187932 (-)
thumpd2 NA coding downstream 891268 13139454 ~ 13150675 (-)
LOC103026300 map4k3,LOC105006890,LOC107715980,LOC107654892,LOC105893436 coding downstream 905964 13092731 ~ 13135979 (-)
znf593 znf593 coding downstream 993369 13039037 ~ 13048574 (-)
kif11 kif11,LOC107553611,LOC104965006,LOC102789789 coding upstream 1368 14057359 ~ 14074419 (-)
LOC103028326 phyhipla,LOC108431655,LOC108270363,LOC107733545,LOC107663293,LOC107671145,LOC107553031 coding upstream 481261 14537252 ~ 14566205 (-)
LOC103029905 LOC108431656 coding upstream 518557 14574548 ~ 14635052 (-)
LOC103029158 ube2d1a,LOC103029158,LOC105891213,LOC108431657,LOC108270474,LOC105911631,LOC107717106,LOC107553913,LOC107733527,LOC107663272,LOC107583697 coding upstream 581744 14637735 ~ 14646363 (-)
LOC103029061 vsx1,LOC108431637,LOC105018048 coding upstream 598230 14654221 ~ 14659392 (-)
G80489 NA non-coding downstream 3898 14037809 ~ 14038045 (-)
G80485 NA non-coding downstream 29233 14012498 ~ 14012710 (-)
G80455 NA non-coding downstream 197856 13802376 ~ 13844087 (-)
G80462 NA non-coding downstream 201074 13839861 ~ 13840869 (-)
G80461 NA non-coding downstream 209401 13831676 ~ 13832542 (-)
G80524 NA non-coding upstream 62489 14118480 ~ 14118706 (-)
G80533 NA non-coding upstream 126203 14182194 ~ 14182460 (-)
G80539 NA non-coding upstream 193629 14249620 ~ 14249919 (-)
G80557 NA non-coding upstream 351812 14407803 ~ 14408520 (-)
G80610 NA non-coding upstream 448632 14504623 ~ 14506077 (-)
LOC103028126 LOC108431632 other downstream 62193 13968605 ~ 13979750 (-)
LOC111193139 NA other downstream 85363 13955841 ~ 13956580 (-)
LOC103027799 rgs7a,LOC108431643,LOC107583631,LOC107668625,LOC107750853,LOC108269497 other downstream 122093 13826067 ~ 13919850 (-)
LOC111193198 NA other downstream 865267 13176036 ~ 13176676 (-)
selenon selenon,sepn1 other downstream 1004637 13021117 ~ 13037306 (-)
G80522 rpl13a,LOC107670882,LOC107583572,LOC107583227 other upstream 58133 14114124 ~ 14117650 (-)
LOC103031386 banf1,LOC108431661,LOC108270073,LOC106576720,LOC104936919,LOC105900308 other upstream 669912 14725903 ~ 14728757 (-)
G80696 pygb,LOC107553065,LOC107671137 other upstream 674572 14730563 ~ 14751762 (-)
LOC103035833 LOC108431672 other upstream 1395132 15451123 ~ 15483016 (-)
LOC111193207 xdh,LOC107752765,LOC107592779,LOC107674096,LOC107733164 other upstream 2592627 16648618 ~ 16649782 (-)

Expression


Co-expression Network