LOC103027799 (rgs7a,LOC108431643,LOC107583631,LOC107668625,LOC107750853,LOC108269497)


Basic Information

Item Value
gene id LOC103027799
gene name rgs7a,LOC108431643,LOC107583631,LOC107668625,LOC107750853,LOC108269497
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 13826067 ~ 13919850 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108365
tgtgtatgtgttgtgcaGTAAGGAGCCGACGCAGAGCAGGGTGAAGCGCTGGGGTTTCGGGATGGACGAGGTTCTGAAAGATCCAGCCGGGAGAGAGCAATTCCTCAAATTCCTGGAGTCAGAGTTCAGCTCAGAAAACCTCAGgttctGGTTGGCCGTGCAGGAGCTGAAGCGGAGGCCAATTCGAGAGGTGCCAACGCGAGTGCAGGAGATCTGGCAGGAGTTCCTGGCTCCTGGAGCGCCGAGTGCCATCAATGTCGACTCAAAGAGCTACGACAAAACCACACAGAACGTTAAGGACCCTGGGCGCTACGCTTTCGAGGATGCACAGgaACATATCTATAAGCTCATGAAAAGTGACTCATACAGTCGTTTCATCAGATCCAGTGCCTACCAGGAGCTCCTGCAGGCCAAGAAGAAGAAAAGTAAGAACTTGTTTTGAAAGGAAAACAATGCTTCCAGGGGAAATCTCTGGCGTCTAAGAGACTGCCTGCTGTTGTGCAATCCTTCTGAGCCTCGGAGAATTCACTGGGGACGAGGACGCTGTCACTTTCATCTCTGCTGTCCGATAGGTCCGGCCCCCGACAGCGGACCAATCACATGCATGTCCAAGGGACTGAGTTTTTACATCACTTTTTACTCGCTTTATTTTCTGCCTGagaaaaaaaggggggaaaGGCTCTTTTAAGGGCATTTCAGGCTTCCAAAGGACATTTTTCCACAGAAAAGAGGCATACTTTCTGAACAAgagaaacaacaatgttttacGTCTTCTCCATCTTTCATCTGTCCAGCCGGACCAAAGTGTCTACATGTAAACTATATAAATGATGTCAgaagcgaaaaaaaaaagaaacaactataaaaacaaaaacggcAACAGATTTAACAGTGTAAAgctaaacctttaaaaaataaacacaagaaCACTTTGTAAACTCACGGCTGCTTCTAGTCCAAGGCTTTCAAGATCCACACTCTCTCTGCAACTGCAATCGCCCTCCATCTCATTGCCATTAATTTTATTgcactatttaaaaaagaaaaaagtagaaaaatttGCTTGTCACAACTGTATGGCCACCCAGGAGACAGCTGTAGGCCACGTCCAATGTCTagtctgcacttttttttttattatttattttctttctttttttgttgtcgTTGTTGTTCACTTCTCtcctgtgtttatttttataccatatttaaagacattttgtcTTGAGAGATGTATTAAAGCCAGTCCTTTATCTGAAAGCACTGCAATAATTCACTTTTTATTGCTGAAGCAAGTAAATCATGTTTTGACCGGGCTCTGCAGCATATTTGCCCAAGtatagctgtgtttatttttcaGAGCATAGCTGATCTatgatttgcttatttatttattataatattaaaacgG
>XM_022672750.1
ATCGGTGGCGTTGAGGTAGACggagagggagaggagggaGCGCGCGCTAGCTGGCTAACCAATTTTCAAATGAATCATCTTGGCTTTTCTCAGTCTGTTAGCTGACACTGTTTTTGGTCGCCTTCTGTAAGTTCGCCTGGCGGAGACGGCCGTGTTTGAGCTGTAGCAGCTGTCTTTTGGAGAAGCTGTTGTGCAGTGGCTCTGGATCATGGCGCAGACCAACAGCTTCGGCCAGACCAGCAACGGAGAGACGGACGACTCTCCCAACATGCTGGTCTACAGAAAGATGGAGGACCTGATAGCCCGGATGCAGGACGAGAAAAATGGTATCCCTATTCGGACGGTGAAGAGTTTCCTCTCAAAGATTCCCAGTGTTTTCTCTGGTTCGGACATCGTGCAGTGGTTGGTGAAGAACCTGAACATAGAGGATCAAGTGGAGGCTCTGCACATGGGCACGTTGATGGCAGCACACGGCTATTTCTTCCCCATCTCCGACCATGTGCTCACACTTAAAGACGACGGCACTTTTTACAGATTCCAGACACCGTACTTCTGGCCCTCTAACTGCTGGGAGCCAGAGAACACTGATTACGCTGTGTACCTGTGCAAAAGAACAATGCAAAACAAAGCACGTCTGGAGCTGGCGGACTACGAGGCAGAGAGCTTAGCACGGCTCCAGCGTGCCTTTGCCAGGAAATGGGAGTTCATATTTATGCAAGCTGAAGCACAAGCTAAAGTCGATAAGAAGAGGGATAAAATCGAGAGGAAAATTCTGGACAGTCAGGAGAGAGCGTTCTGGGATGTGCACAGACCAGTGCCAGGGTGTGTGAACACGACAGAAGTGGACATCAAGAAGTCCTCCAGAATGAAGAACCCTCACAAAACAAGAAAGTCTGTATACGGGCTTCAGAACGACATCCGCAGTCACAGCCCCACCCACACACCAGCCCCTGAGGCCAAGCAGCCGACCGCCGAGGAGCTCCAAGAACAGATCAAATTCTGGCAGGCACAGTTAGATAGGCATCGATTGAAGATGTCCAAAGTTGCAGAgggTAAGGAGCCGACGCAGAGCAGGGTGAAGCGCTGGGGTTTCGGGATGGACGAGGTTCTGAAAGATCCAGCCGGGAGAGAGCAATTCCTCAAATTCCTGGAGTCAGAGTTCAGCTCAGAAAACCTCAGgttctGGTTGGCCGTGCAGGAGCTGAAGCGGAGGCCAATTCGAGAGGTGCCAACGCGAGTGCAGGAGATCTGGCAGGAGTTCCTGGCTCCTGGAGCGCCGAGTGCCATCAATGTCGACTCAAAGAGCTACGACAAAACCACACAGAACGTTAAGGACCCTGGGCGCTACGCTTTCGAGGATGCACAGgaACATATCTATAAGCTCATGAAAAGTGACTCATACAGTCGTTTCATCAGATCCAGTGCCTACCAGGAGCTCCTGCAGGCCAAGAAGAAGTCTGGGAGTTTTCAGGACCGCAGAACCTCATTTGAAAAATTCACTCGTAATGTGGTAAGTGGGTGTGTTCCCCCACCCCGAGTGACTGCCtaactgaccaatcagaagtCAGATCTGGTCAGATGACCTCTGTCCTGGTGCTTGAACCTCCCCAACACCTCTATGATGTCACACTTAATTTTACTGACAACACAACACTACAGTTTCTCTCGTACAGGATGAAGCAAACTGCCCTCTcctcttctcatctcttttcttctcttcacttcc

Function

symbol description
rgs7a Predicted to act upstream of or within G protein-coupled receptor signaling pathway; intracellular signal transduction; and negative regulation of signal transduction. Is expressed in nervous system and notochord. Orthologous to human RGS7 (regulator of G protein signaling 7).

NR:

description
PREDICTED: regulator of G-protein signaling 7 isoform X1

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
TU108365 False 1411 TUCP 0.43 5 13826067 13830800
XM_022672750.1 True 1726 mRNA 0.52 16 13828481 13919850

Neighbor

gene id symbol gene type direction distance location
LOC103026512 LOC108431645 coding downstream 6406 13808101 ~ 13819661 (-)
LOC103022962 NA coding downstream 638135 13181021 ~ 13187932 (-)
thumpd2 NA coding downstream 675392 13139454 ~ 13150675 (-)
LOC103026300 map4k3,LOC105006890,LOC107715980,LOC107654892,LOC105893436 coding downstream 690088 13092731 ~ 13135979 (-)
znf593 znf593 coding downstream 777493 13039037 ~ 13048574 (-)
slc22a15 slc22a15,LOC107676332 coding upstream 122093 14041943 ~ 14055991 (-)
kif11 kif11,LOC107553611,LOC104965006,LOC102789789 coding upstream 137509 14057359 ~ 14074419 (-)
LOC103028326 phyhipla,LOC108431655,LOC108270363,LOC107733545,LOC107663293,LOC107671145,LOC107553031 coding upstream 617402 14537252 ~ 14566205 (-)
LOC103029905 LOC108431656 coding upstream 654698 14574548 ~ 14635052 (-)
LOC103029158 ube2d1a,LOC103029158,LOC105891213,LOC108431657,LOC108270474,LOC105911631,LOC107717106,LOC107553913,LOC107733527,LOC107663272,LOC107583697 coding upstream 717885 14637735 ~ 14646363 (-)
LOC111193200 NA non-coding downstream 89083 13734047 ~ 13736984 (-)
LOC111193199 NA non-coding downstream 348409 13468186 ~ 13477658 (-)
G80333 NA non-coding downstream 419660 13406184 ~ 13406407 (-)
G80320 NA non-coding downstream 458973 13366770 ~ 13367094 (-)
G80295 NA non-coding downstream 552951 13272803 ~ 13273116 (-)
G80485 NA non-coding upstream 92648 14012498 ~ 14012710 (-)
G80489 NA non-coding upstream 117959 14037809 ~ 14038045 (-)
G80524 NA non-coding upstream 198630 14118480 ~ 14118706 (-)
G80533 NA non-coding upstream 262344 14182194 ~ 14182460 (-)
G80539 NA non-coding upstream 329770 14249620 ~ 14249919 (-)
LOC111193198 NA other downstream 649391 13176036 ~ 13176676 (-)
selenon selenon,sepn1 other downstream 788761 13021117 ~ 13037306 (-)
LOC103046962 ptena,LOC108411875,LOC107670848,LOC101171856,LOC105900832,LOC105940225,LOC104929647,LOC103387686 other downstream 913672 12871989 ~ 12912395 (-)
edaradd edaradd other downstream 1212336 12585162 ~ 12613731 (-)
ncmap NA other downstream 1453263 12334399 ~ 12372804 (-)
LOC111193139 NA other upstream 35991 13955841 ~ 13956580 (-)
LOC103028126 LOC108431632 other upstream 48755 13968605 ~ 13979750 (-)
G80522 rpl13a,LOC107670882,LOC107583572,LOC107583227 other upstream 194274 14114124 ~ 14117650 (-)
LOC103031386 banf1,LOC108431661,LOC108270073,LOC106576720,LOC104936919,LOC105900308 other upstream 806053 14725903 ~ 14728757 (-)
G80696 pygb,LOC107553065,LOC107671137 other upstream 810713 14730563 ~ 14751762 (-)

Expression


Co-expression Network