LOC111193198


Basic Information

Item Value
gene id LOC111193198
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 13176036 ~ 13176676 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108140
tttaggaaTATATGATATGATGATATCCCTGGACAGTGCATGGAGCAGGAATAACAGCGATATCATCTCTTGTGTtcctaaaaacaaaatgtatcaGATCAGTAAAAAACAACTGAAACAGTAACtggttctgtttattttttagaagAGGAGATTATTGAATGAATCACTGGTCAGTGCATGGAGCAGGAGTACCAGGCCCTGAACAGGAGAACTCTGAATATTTGATGTCAAAAGATGAGGAGACTGTAGCTGCCAGGACAACTGG
>XR_002650328.1
TAAGGATATGTGCTTGGTGAGGATATAAATTGTATTTAGAAGTTTGTCTTCTCTCTCTTAGCATGATATGCCTAGCATAAGGAGATGGTGGGTGAACCTCCTGATCAACAACATGACACATGGAAGgaaTATATGATATGATGATATCCCTGGACAGTGCATGGAGCAGGAATAACAGCGATATCATCTCTTGTGTtcctaaaaa
>XR_002650329.1
CATGAATAGACCTTCGACTTCACTCAGCATGATATGCCTAGCATAAGGAGATGGTGGGTGAACCTCCTGATCAACAACATGACACATGGAAGgaaTATATGATATGATGATATCCCTGGACAGTGCATGGAGCAGGAATAACAGCGATATCATCTCTTGTGTtcctaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108140 True 268 lncRNA 0.39 2 13176036 13176419
XR_002650328.1 False 205 lncRNA 0.39 2 13176336 13176619
XR_002650329.1 False 171 ncRNA 0.42 3 13176336 13176676

Neighbor

gene id symbol gene type direction distance location
thumpd2 NA coding downstream 25361 13139454 ~ 13150675 (-)
LOC103026300 map4k3,LOC105006890,LOC107715980,LOC107654892,LOC105893436 coding downstream 40057 13092731 ~ 13135979 (-)
znf593 znf593 coding downstream 127462 13039037 ~ 13048574 (-)
LOC103025372 LOC103025372 coding downstream 208401 12956370 ~ 12967635 (-)
LOC103047466 papss2a,papss2,LOC108411876,LOC105900838,LOC107715960,LOC107583551,LOC107553500,LOC107670849,LOC107689802 coding downstream 225089 12921760 ~ 12950947 (-)
LOC103022962 NA coding upstream 4345 13181021 ~ 13187932 (-)
LOC103026512 LOC108431645 coding upstream 631425 13808101 ~ 13819661 (-)
slc22a15 slc22a15,LOC107676332 coding upstream 865267 14041943 ~ 14055991 (-)
kif11 kif11,LOC107553611,LOC104965006,LOC102789789 coding upstream 880683 14057359 ~ 14074419 (-)
LOC103028326 phyhipla,LOC108431655,LOC108270363,LOC107733545,LOC107663293,LOC107671145,LOC107553031 coding upstream 1360576 14537252 ~ 14566205 (-)
G80258 NA non-coding downstream 29338 13146252 ~ 13146698 (-)
G80253 NA non-coding downstream 37150 13138616 ~ 13138886 (-)
G80239 NA non-coding downstream 88666 13018943 ~ 13087370 (-)
G80243 NA non-coding downstream 125023 13049763 ~ 13051013 (-)
G80168 NA non-coding downstream 200736 12913199 ~ 12975300 (-)
G80269 NA non-coding upstream 182 13176858 ~ 13178927 (-)
G80288 NA non-coding upstream 82786 13259462 ~ 13266530 (-)
G80295 NA non-coding upstream 96127 13272803 ~ 13273116 (-)
G80320 NA non-coding upstream 190094 13366770 ~ 13367094 (-)
G80333 NA non-coding upstream 229508 13406184 ~ 13406407 (-)
selenon selenon,sepn1 other downstream 138730 13021117 ~ 13037306 (-)
LOC103046962 ptena,LOC108411875,LOC107670848,LOC101171856,LOC105900832,LOC105940225,LOC104929647,LOC103387686 other downstream 263641 12871989 ~ 12912395 (-)
edaradd edaradd other downstream 562305 12585162 ~ 12613731 (-)
ncmap NA other downstream 803232 12334399 ~ 12372804 (-)
G79945 NA other downstream 984008 12157586 ~ 12192028 (-)
LOC103027799 rgs7a,LOC108431643,LOC107583631,LOC107668625,LOC107750853,LOC108269497 other upstream 649391 13826067 ~ 13919850 (-)
LOC111193139 NA other upstream 779165 13955841 ~ 13956580 (-)
LOC103028126 LOC108431632 other upstream 791929 13968605 ~ 13979750 (-)
G80522 rpl13a,LOC107670882,LOC107583572,LOC107583227 other upstream 937448 14114124 ~ 14117650 (-)
LOC103031386 banf1,LOC108431661,LOC108270073,LOC106576720,LOC104936919,LOC105900308 other upstream 1549227 14725903 ~ 14728757 (-)

Expression


Co-expression Network