G80243


Basic Information

Item Value
gene id G80243
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 13049763 ~ 13051013 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108111
atagatagatagatagatagattgatacaTATGAGCAAAAAGAAAacactaaatacaaaaaaaaaacattgacagatacataaatagacagatagatagatagaatagatagatagatacatagatagaatagatagatacatagatagatagataacgaGTAAAAGTAAGACccctaaatataaaaaatgttgaaatagaTAGATAACGATCAAAAGAAGACacctaaaaatgaaaaagagatgATACATATGAGCAAAAGAataaactaaatacaaaaaagttgacagatacataaatagataaacaaagaaataaacacttaaacatgaaaagatagatagatagatagatagatagatagataacgaGTAAAAGTGAGActcctaaatataaaaaagttgacATAGATAGGTAATGATCAAATAAGAACTTAAACATGAAAAAGTAAATAGATACATAAAAatcgatagagagagagagagatccttTAAACAGAcccttattaaaaaaatataaaaaatttaagtCAGATAGAAAacactaaatacaaaaaaagttgatagatagatagatagatagatagataattatcaaataaacacttaaacatgaaaagatagatagatagatacataaatagatagataatgaTCAAATCAACAcgtaaacatgaaaaaatagatagattataaaataagacttaaatatgaaataagttgatataatatagatagataatgaTCAAAAGAAGacacctaaaaataaaaaagatagatagatagatagatagataacgaGTAAAAGTGAGACCCctaaatttacaaaaatgttgagatagatagataacgaTCAAAAGAAGACacctaaaaattaaaaagagaaagtaaatagatagatagataatgatcaaataaacacttaaacatgaAAAAGTAAATAGATACATAAGtagatacataaaaaaaaaatatatatagatagatagatagatagatagtgagtaaaataagacttaaatatgaaataagttgatataatatagatagataatgaTCAAAAGAAGacacctaaaaataaaaaagatagaaCAATTCAGTTTTAATGTACATGTTTTCAGATTTCTCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108111 True 1130 lncRNA 0.23 3 13049763 13051013

Neighbor

gene id symbol gene type direction distance location
znf593 znf593 coding downstream 1189 13039037 ~ 13048574 (-)
LOC103025372 LOC103025372 coding downstream 82128 12956370 ~ 12967635 (-)
LOC103047466 papss2a,papss2,LOC108411876,LOC105900838,LOC107715960,LOC107583551,LOC107553500,LOC107670849,LOC107689802 coding downstream 98816 12921760 ~ 12950947 (-)
LOC103046657 NA coding downstream 214215 12821915 ~ 12835548 (-)
LOC103024740 LOC103024740,LOC108413681 coding downstream 314659 12730626 ~ 12735104 (-)
LOC103026300 map4k3,LOC105006890,LOC107715980,LOC107654892,LOC105893436 coding upstream 41718 13092731 ~ 13135979 (-)
thumpd2 NA coding upstream 88441 13139454 ~ 13150675 (-)
LOC103022962 NA coding upstream 130008 13181021 ~ 13187932 (-)
LOC103026512 LOC108431645 coding upstream 757088 13808101 ~ 13819661 (-)
slc22a15 slc22a15,LOC107676332 coding upstream 990930 14041943 ~ 14055991 (-)
G80168 NA non-coding downstream 74463 12913199 ~ 12975300 (-)
G80125 slc16a12,slc16a12a,LOC107689836,LOC107715954,LOC107744897,LOC107583546 non-coding downstream 231121 12818389 ~ 12818642 (-)
G80105 pank1,pank1a,LOC107689800,LOC107553481 non-coding downstream 258176 12782613 ~ 12791587 (-)
G80060 NA non-coding downstream 465902 12583233 ~ 12583861 (-)
G80047 NA non-coding downstream 506491 12540145 ~ 12543272 (-)
G80253 NA non-coding upstream 87603 13138616 ~ 13138886 (-)
G80258 NA non-coding upstream 95239 13146252 ~ 13146698 (-)
G80269 NA non-coding upstream 125845 13176858 ~ 13178927 (-)
G80288 NA non-coding upstream 208449 13259462 ~ 13266530 (-)
G80295 NA non-coding upstream 221790 13272803 ~ 13273116 (-)
selenon selenon,sepn1 other downstream 12457 13021117 ~ 13037306 (-)
LOC103046962 ptena,LOC108411875,LOC107670848,LOC101171856,LOC105900832,LOC105940225,LOC104929647,LOC103387686 other downstream 137368 12871989 ~ 12912395 (-)
edaradd edaradd other downstream 436032 12585162 ~ 12613731 (-)
ncmap NA other downstream 676959 12334399 ~ 12372804 (-)
G79945 NA other downstream 857735 12157586 ~ 12192028 (-)
LOC111193198 NA other upstream 125023 13176036 ~ 13176676 (-)
LOC103027799 rgs7a,LOC108431643,LOC107583631,LOC107668625,LOC107750853,LOC108269497 other upstream 775054 13826067 ~ 13919850 (-)
LOC111193139 NA other upstream 904828 13955841 ~ 13956580 (-)
LOC103028126 LOC108431632 other upstream 917592 13968605 ~ 13979750 (-)
G80522 rpl13a,LOC107670882,LOC107583572,LOC107583227 other upstream 1063111 14114124 ~ 14117650 (-)

Expression


Co-expression Network