znf593 (znf593)


Basic Information

Item Value
gene id znf593
gene name znf593
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 13039037 ~ 13048574 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244590.3
AGCGCCTTCCACCCGGAAGCAGAGCCTCACTCACTGCAGGAGTAAACACGTGTGTGCTGGAGGACTGAGCCTGAGCCTGACTGATTATCTACCAGCTTTATCAATCATGGGGAAGTCCAAGCAGGTGGGAAACCACAAAAGTGACAAAAAGAAGAACATAGCAAAAACATGGAAGACGAAACGACGGACAAAAGACCTGGATCAGATCCATGCAGACATGATCCCTGCTAACGCAGTCAAGCTGCTGAAACAGGATGTGGATTATGACGTCACGGGCTGCGCTCAGCACTACTGCCTGCACTGCGCGAGATACTTTGTTGACCTGAAAGCCCTGAAGGAACATTTCAAGACCAAGGTCCATAAAAGACGTTTGAAGCAGCTGAAAGAAGAGCCGTACACCCAGGCTGAGGCTGAGAGAGCAGCAGGAATGGGCTCCTATATCCCACCAAAAACTGTAGACGTTCAAACACAGCAAGTGGAGGAGGACATGGACTGACCAGCCTGATCTTCTGACTGGAGGACTCTTCTAGATCACTGTGATACAGTGATAAAGTGATCTTAATCTGGTAACACTTTGGAGAACAAGAATCTGTTCTTTGGTCTTGTTTAAGACTAAGGCTGCTGTGTTCTAGCACAGTGGATCAGGACGTGTGCTTATGGTTGTTCTGTATTCACAGTTAAAGCAAATGTAAGCCTTAAAAATGTTGGTGCAAAACTTTACCATAAACTTCTTAAACATAAAGGTACTTTTAACAGTTAATTTAACAGTTAATGCCATATAAGAactgattttaaattattgCTTAAAGAAATGTGAGGATGTAGAACCTTTAATTGGTAAAGAGTCtatatattgatttaaaaaaaaaacatttcagctttaaaAACCTGTTAAAAGCAGTTCATTATGTAACCACCAATGGTCGTTTTATGGCATCACTGAAAGAACTCATTGTaggacctttatttttaagattctgGAACAATTTTCTGtttaatattctttttattttgcagaaTCTGATATTTGTCAAGACTTAATTGATAATAATTTTGTtgattacataaaataaacacttaaatccTGAAAGAGCTGGTTGATATTCAATCAGCCTCGTGTTCAATTGAATCCCACAGCCATGAACCGATATCATTGTTTGTTTACTCAGTTTTTCAGGATTTGTTCACAGATGAAACTATGTAATTACATATGTAATGTcatgtgtaaataaaaataaagagttaTGAGTACAGGA
>XM_022672736.1
GCGCCTTCCACCCGGAAGCAGAGCCTCACTCACTGCAGGAGTAAACACGTGTGTGCTGGAGGACTGAGCCTGAGCCTGACTGATTATCTACCAGCTTTATCAATCATGGGGAAGTCCAAGCAGGTGGGAAACCACAAAAGTGACAAAAAGAAGAACATAGCAAAAACATGGAAGACGAAACGACGGACAAAAGACCTGGATCAGATCCATGCAGACATGATCCCTGCTAACGCAGTCAAGCTGCTGAAACAGGATGTGGATTATGACGTCACGGGCTGCGCTCAGCACTACTGCCTGCACTGCGCGAGATACTTTGTTGACCTGAAAGCCCTGAAGGAACATTTCAAGACCAAGGTCCATAAAAGACGTTTGAAGCAGCTGAAAGAAGAGCCGTACACCCAGGCTGAGGCTGAGAGAGCAGCAGGAATGGGCTCCTATATCCCACCAAAAACTGTAGACGTTCAAACACAGCAAGTGGAGGAGGACATGGACTGACCAGCCTGATCTTCTGACTGGAGGACTCTTCTAGATCACTGTGATACAGTGATAAAGTGATCTTAATCTGGTAACACTTTGGAGAACAAGAATCTGTTCTTTGGTCTTGTTTAAGACTAAGGCTGCTGTGTTCTAGCACAGTGGATCAGGACGTGTGCTTATGGTTGTTCTGTATTCACAGTTAAAGCAAATGTAAGCCTTAAAAATGTTGGTGCAAAACTTTACCATAAACTTCTTAAACATAAAGGTACTTTTAACAGTTAATTTAACAGTTAAT

Function

symbol description
znf593 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZNF593 (zinc finger protein 593).

NR:

description
zinc finger protein 593

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K14821 BUD20; bud site selection protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244590.3 True 1256 mRNA 0.39 4 13039037 13048574
XM_022672736.1 False 772 mRNA 0.45 4 13040670 13048573

Neighbor

gene id symbol gene type direction distance location
LOC103025372 LOC103025372 coding downstream 71402 12956370 ~ 12967635 (-)
LOC103047466 papss2a,papss2,LOC108411876,LOC105900838,LOC107715960,LOC107583551,LOC107553500,LOC107670849,LOC107689802 coding downstream 88090 12921760 ~ 12950947 (-)
LOC103046657 NA coding downstream 203489 12821915 ~ 12835548 (-)
LOC103024740 LOC103024740,LOC108413681 coding downstream 303933 12730626 ~ 12735104 (-)
yipf4 yipf4,LOC107744423,LOC107670878,LOC106576945 coding downstream 514200 12519463 ~ 12524837 (-)
LOC103026300 map4k3,LOC105006890,LOC107715980,LOC107654892,LOC105893436 coding upstream 44157 13092731 ~ 13135979 (-)
thumpd2 NA coding upstream 90880 13139454 ~ 13150675 (-)
LOC103022962 NA coding upstream 132447 13181021 ~ 13187932 (-)
LOC103026512 LOC108431645 coding upstream 759527 13808101 ~ 13819661 (-)
slc22a15 slc22a15,LOC107676332 coding upstream 993369 14041943 ~ 14055991 (-)
G80168 NA non-coding downstream 63737 12913199 ~ 12975300 (-)
G80125 slc16a12,slc16a12a,LOC107689836,LOC107715954,LOC107744897,LOC107583546 non-coding downstream 220395 12818389 ~ 12818642 (-)
G80105 pank1,pank1a,LOC107689800,LOC107553481 non-coding downstream 247450 12782613 ~ 12791587 (-)
G80060 NA non-coding downstream 455176 12583233 ~ 12583861 (-)
G80047 NA non-coding downstream 495765 12540145 ~ 12543272 (-)
G80243 NA non-coding upstream 1189 13049763 ~ 13051013 (-)
G80253 NA non-coding upstream 90042 13138616 ~ 13138886 (-)
G80258 NA non-coding upstream 97678 13146252 ~ 13146698 (-)
G80269 NA non-coding upstream 128284 13176858 ~ 13178927 (-)
G80288 NA non-coding upstream 210888 13259462 ~ 13266530 (-)
selenon selenon,sepn1 other downstream 1731 13021117 ~ 13037306 (-)
LOC103046962 ptena,LOC108411875,LOC107670848,LOC101171856,LOC105900832,LOC105940225,LOC104929647,LOC103387686 other downstream 126642 12871989 ~ 12912395 (-)
edaradd edaradd other downstream 425306 12585162 ~ 12613731 (-)
ncmap NA other downstream 666233 12334399 ~ 12372804 (-)
G79945 NA other downstream 847009 12157586 ~ 12192028 (-)
LOC111193198 NA other upstream 127462 13176036 ~ 13176676 (-)
LOC103027799 rgs7a,LOC108431643,LOC107583631,LOC107668625,LOC107750853,LOC108269497 other upstream 777493 13826067 ~ 13919850 (-)
LOC111193139 NA other upstream 907267 13955841 ~ 13956580 (-)
LOC103028126 LOC108431632 other upstream 920031 13968605 ~ 13979750 (-)
G80522 rpl13a,LOC107670882,LOC107583572,LOC107583227 other upstream 1065550 14114124 ~ 14117650 (-)

Expression


Co-expression Network