selenon (selenon,sepn1)


Basic Information

Item Value
gene id selenon
gene name selenon,sepn1
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 13021117 ~ 13037306 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108101
AGGTTCGGGGCGGACTCTCCGGGAGACAGTCCTGGAAAGTTCGCCCGTTCTGGCCTTGCTCAACCAGAGCTTCATCAGCAGCTGGTCTCTAGTCAAAGAACTGGAGGACCTGCAGGCCGATGAGCAGAATCTGGCACTGAGTCAGAAGGCACATTTACACCTGGAGAGCTACAACTTCCCAGTGGAAATGATTTTGGCGTTACCTAATGGAACAGTGGTGCACCACATCAACGCCAACAACTTCCTCGACCAGACGTCCATGAAGCCGGACGAGGGGCCGGCCTTCAGTATCTCGGGTGGGTTTGAGGACCCCTCCACCTCTACATACGTCCGCTTCCTCCAGGAGGGACTGGAAAAGGCCAAGCCTTACTTGGAGTCGTAGAAACACAGGACACAGGACCTTTCcactgtgtgtgtaagggagtgaatgagtgagactgagtgtgtgagaaagtatgtgtatgtgtgtgtgtgtgagagagagagagaccgttACGGGAAGTGAGCTAGGCTCCTCCATGTCTTGGAATGAACAGGATGAGGTCAATCTGAGGGGGTTTAAGTGGAGATAATGAGATAATACTGCGCTGGACTGACATCTGGAAGATTCTTGGCATAACAAGCAGCTGCTGACCCTtctctctatctgctgcctaCAATCCACATTTCTAGCAAGACACACGATAACAAAAAAGACCCACTTAAACACGAGCTTAGGCTTAGTGCCCTGTTCTGATGGGGTATGAAGGCTCTACAGAGCTAAAGAACCTTATTAATGTAGTGCTTTTTGTAGAGAAATCTTTTAAACCCTCCAGCTTTTGTCATGCTGGAGGACATTTTTCTACTTCTGTTCAGATTTTTTCACCAGAAGGCATTTCATTCCTGCGGTTGTGTTTGGTTTTTTGGTACTTGGCTTCTGTGGATGCTGTTATTGTAGTGTGTGTCTGCGGTTTTTAAGAAGGATGTGTGTGTTGCCCAGGTTGGCTGTGGGTAGTGGTttcaatgtgtgtgtttgtgtgtgtgtttctctcagtgcaGGAGAGCCACAGGGCCTGTGGTTTCCTGAATAAAGCAATTTGTGATGGCCCGGTCTGAAAGCTCACTGTGGCGGGACCGGGCCTGATGTCGTTGCTTCAGTCCAGGGAAGCACAGCCTAttatctctctcacactggtacacgacaacacacacacacacacacacacacacagacacacacacacacatatgggaTGGCTTAAAGAGTTCTGAGCATTTCAGAAAGCATAATTgttgaaattattaaaatgcaaCCACTATGATTATTAATGGGCTTTAAGCTGTGGTCTACATTTAAATGGGAATTTTCCCACAACTAAATGAAgatttaggcccaatcccaattCTCTTTTGTATGCCTACCCCCCTTGTTTTTAAGGGTGAAATCCACCCTCTAAGAATTAGGACAACCTTAAATCTCCTGATACAGATATAGCTATAGCAAGTGgagtgctaaagttcagcaacctaactgctgctgctagtTAACTAGTAAACTTATCGTATGTCTTGAAAAAGGGTGcaaccattaactattattgtccattccttaattcatcTGTGACGGGGAGCtgaaatttagcttttttttttttttttttggcttttattagcttttattttcctgttccaccttaagtgGTGCAACAtacagcagaggctgcagcatttaaggtggaacaggggGAAGTTAGCTAGTAGGGCAgcacgatattgaaaaaaaaattacattgcaaatgtttttttttttttttttttttgacgatatatatcgcaatattaaacaattcagggcccatgatgtcaccagccctGCCCCCACCCGTGCGCTGTCTCATATCTGGactgatcaagagctgagtcagggCCGAGCATTCAAAAcccgagaaaaacagcaaaacaacagtaatGAAATAGGATTAGGCCTAAAACGGAGTCCTCTCAGAGTTTTGCATTCTCAGAATTGTCAGATTCTTCCAGAATAGTGGTAAATGGAACCTAATGTATCCATAAATTATTTAACAGGTCAGTTTTCCAGTCGTGGATTAAGCCTTGTTGTAGACTATGTTTTCCCTTCAATGAAAATAATCTCTatataaaatgctgtgtagtccaagattCAGCTTAATCATTGTCTAGGAAACCACCCCTAGAATGTCCTAACCTACGACACAATTTgttataaatacaacaaaaaggAGATGCCGTGTTGCATATGCTCCAGTTAAAAAAATTGCTAGAATTTGCATTTTGCACTACTGGGTCCTAAGAAAGTTCTAAGTAGTAAAACAACATGATAATAAGTACAAACATTTGTCGAATAGCCTACCTTCGTTTACCCCTATCATTTAGAAATGCAGagatgctcccaacaggtttccaatactagtgataggggaataAAGTTGCCCCTGCAAAAAAATGGCTATtcttacaccattaacaagctcaaaatagctccacatttcattggtagaattctgagagctCTAACATTTGTGATATgtgtaaaataactttaaaaagtaGAGAGGTACATGCAGGGTTTTTCAAAGCAAAATAGTTCCTGTTCACAGCCCAGTTTCACTTTTAAATCAGTAACCATCCAATCACTACATGCAGAGCCACAGAGTTCTGTCAGATTGATGGAAATCCACTGTATTGGCTGCACTGTGATCATAGATATCACATCTGGAATGTGAGGGATTATTGTATACCACAGTTAAATGTATGTTCTTGATTTGTTGAGCTCCAGAGTTAAATTTTCCAGGGTTGGCGGTTGTCAGCAGGGGCTAGTGCTGCTATAGATTTCAGCTATTGGCATGAATTGGATCAGGCGTACAAGgacaaagagaaaaacactTCTGCTGAGTGTTAAACTCCCTACagttagccataacattaaaatcaatgCCAGCAGAAATGTATAATATTGATTATGTTGTTCTAATAGCACTGGTCAAGTAGCGATTATATAGTATAAGCCAGACAGTCAGTCATGTGTTGAAGAACCTGAGACACTAAATTGCTTTTAATGGCTAGACGACCAGGTCAGAACATCTACAAAACAATATGGAGGTCTTGCGTTCATTGATGTGCATGGaggttccaccttaaaacctACAGGACTTTCTTgaaaggatctgctgctaacgttttggtgccagataccacaAAAGGCATCCACACAATATTAGTCTTGTGGTTtcaatgttatggctgatttttgtattttttgttttttgttgtccaTTAGTCTACAAATCATGGCCCCAAAGAAAACCAAAGGAATTACTCCCCGCAGTGGGAAATATGCACCATGATCCAGAATGAATCCAGTTCAAAAGCTCTAAAATGATCTGTTCATATTTGAGTtcctgtgtgagtgtatgtgctGTTCATACTTGtgccataaaataaaaaaggcctttctttttaataaaat
>XM_007244589.3
CGGGTGCCGAAAAAAGAAAGGCAAATACAATGCTACAGTGGCTCTCCTGCTCTCCTCCAGATTCCAGCTGGAACCCGTGAGGAAAATGTGAGAAATTGGAGGCTGGAAGGAAAACTGCTTCTCATATGATTTCCACCGTCTAATAAACGTTCTTCAGGGACCGTTTTTGGCCGGAAAGCTCGGAGATAAGTCGGCGTTATGCGAGTAACTGGCGCGGTTTAGCTCTGCCTGGACATGACGGCGGAGGAGGCTGCTGGGGAAGCAGCGGCAGCACCGCGGACGGAGGCGCCCTCGTGCCCGGGGAAGGAGCGCGAAGCTCGGGCTGCGGTGAGCGGAGGAGCCGGTTACTCACGGAGGAGGTGGGCGCTCTCCACGCTGCTGCTCATGGTTGCTGTTCCTGTTATTGGAGTGGGCGTGAAATACTGCCAAGACACTTTGGTTTGGATGAGACATGAAGCCGGATTGAAGACACTGGGACCGGAGGGGCTCTTTTTGTTCTCGTCTCTAGACGTGGACCATGACTTATACCTCAGCCCAGAGGAGTTCAAACCTATTGCTGAAAAACTCACAGGTATCGCCCCTCCTGCAGAGTTTGAGGATGAATTTCTCCATGATCCCAAtggagagacactcactcttcATGCTAAAATGGAGCCTCTCCTGCTGGAGACCATGACCAAAAGCAAGGATGGTTTCCTGGGGGTGTCCCATAGTTCCTTAAGTGGGCTCCGTTCATGGAAGAGCCCTGTTGTTCCATCCTCCACTTTATCTGCGGCTCAGTTCCGAGTGTTTCTGCCTCCAAAGGAAAAAGGGAAGGTTGGGGACACTTGGTGGATCATACCCAGCGAACTCAACATCTTCACCGGCTACCTGCCCAACAATCGCTACCACCCGCCAACACCACGCGGCAAAGAGGTTCTGATTCACAACCTGCTGAGTATGTTTCACCCGCGGCCGTTTATCAAATCCCGCTTTGCTCCACAGGGAGTCGTGGCCTGTGTACGAGCTCTCAATGATTTCTACTACGATATCGTCTTCAGGATACACGCCGAGTTCCAGCTGAACGAAGTCCCGAATTTCCCGTTCTGGTTCACTCCTGGACAGTTCGCTGGTCACATCATACTCTCCAGAGACGCCTCTCATGTCCGGGATTTCCACCTTTATGTTCCTAATGACAAaTCTCTGAATGTGGACATGGAGTGGCTGTATGGTTCCAGTGAGAGCAGCAGCATGGAAGTGGACATTGGCTACCTTCCACAGATGGAGTTGCGAGCGGCTGGTCCGTCCACACCCTCTGTGATTTATGACGAGCAGGGGAATGTGATTGACAGCTCGGTGGAGGGAGGAGAGCCCATTCAGTTTGTGTTCGAGGAGATCCACTGGAGCTCTGAGATCAGCCGAGAGGAGGCGGCCAACCGACTGGAGGTCACCTTCTATCCCTTTAAAAAGgttcCTTATCTGCCTTTTACAGAGGCCTTCAGCAGAGCAGAAGCAGAGAGGAAGCTGGTTCACTCCATCCTCCTCTGGGGTGCTCTGGACGACCAGTCCTGCTGAGGTTCGGGGCGGACTCTCCGGGAGACAGTCCTGGAAAGTTCGCCCGTTCTGGCCTTGCTCAACCAGAGCTTCATCAGCAGCTGGTCTCTAGTCAAAGAACTGGAGGACCTGCAGGCCGATGAGCAGAATCTGGCACTGAGTCAGAAGGCACATTTACACCTGGAGAGCTACAACTTCCCAGTGGAAATGATTTTGGCGTTACCTAATGGAACAGTGGTGCACCACATCAACGCCAACAACTTCCTCGACCAGACGTCCATGAAGCCGGACGAGGGGCCGGCCTTCAGTATCTCGGGTGGGTTTGAGGACCCCTCCACCTCTACATACGTCCGCTTCCTCCAGGAGGGACTGGAAAAGGCCAAGCCTTACTTGGAGTCGTAGAAACACAGGACACAGGACCTTTCcactgtgtgtgtaagggagtgaatgagtgagactgagtgtgtgagaaagtatgtgtatgtgtgtgtgtgtgagagagagagagaccgttACGGGAAGTGAGCTAGGCTCCTCCATGTCTTGGAATGAACAGGATGAGGTCAATCTGAGGGGGTTTAAGTGGAGATAATGAGATAATACTGCGCTGGACTGACATCTGGAAGATTCTTGGCATAACAAGCAGCTGCTGACCCTtctctctatctgctgcctaCAATCCACATTTCTAGCAAGACACACGATAACAAAAAAGACCCACTTAAACACGAGCTTAGGCTTAGTGCCCTGTTCTGATGGGGTATGAAGGCTCTACAGAGCTAAAGAACCTTATTAATGTAGTGCTTTTTGTAGAGAAATCTTTTAAACCCTCCAGCTTTTGTCATGCTGGAGGACATTTTTCTACTTCTGTTCAGATTTTTTCACCAGAAGGCATTTCATTCCTGCGGTTGTGTTTGGTTTTTTGGTACTTGGCTTCTGTGGATGCTGTTATTGTAGTGTGTGTCTGCGGTTTTTAAGAAGGATGTGTGTGTTGCCCAGGTTGGCTGTGGGTAGTGGTttcaatgtgtgtgtttgtgtgtgtgtttctctcagtgcaGGAGAGCCACAGGGCCTGTGGTTTCCTGAATAAAGCAATTTGTGATGGCCCGGTCTGAAAGCTCACTGTGGCGGGACCGGGCCTGATGTCGTTGCTTCAGTCCAGGGAAGCACAGCCTAttatctctctcacactggtacacgacaacacacacacacacacacacacacacagacacacacacacacatatgggaTGGCTTAAAGAGTTCTGAGCATTTCAGAAAGCATAATTgttgaaattattaaaatgcaaCCACTATGATTATTAATGGGCTTTAAGCTGTGGTCTACATTTAAATGGGAATTTTCCCACAACTAAATGAAgatttaggcccaatcccaattCTCTTTTGTATGCCTACCCCCCTTGTTTTTAAGGGTGAAATCCACCCTCTAAGAATTAGGACAACCTTAAATCTCCTGATACAGATATAGCTATAGCAAGTGgagtgctaaagttcagcaacctaactgctgctgctagtTAACTAGTAAACTTATCGTATGTCTTGAAAAAGGGTGcaaccattat

Function

symbol description
selenon Predicted to enable oxidoreductase activity. Involved in several processes, including calcium-mediated signaling; muscle cell development; and regulation of ryanodine-sensitive calcium-release channel activity. Acts upstream of or within skeletal muscle fiber development. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including anterior axial hypoblast; mesoderm; nervous system; tail bud; and trunk. Human ortholog(s) of this gene implicated in congenital fiber-type disproportion and rigid spine muscular dystrophy 1. Orthologous to human SELENON (selenoprotein N).
sepn1 selenoprotein N

NR:

description
selenoprotein N

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108101 True 3484 lncRNA 0.42 5 13021117 13026433
XM_007244589.3 False 3124 mRNA 0.50 13 13023669 13037306

Neighbor

gene id symbol gene type direction distance location
LOC103025372 LOC103025372 coding downstream 53482 12956370 ~ 12967635 (-)
LOC103047466 papss2a,papss2,LOC108411876,LOC105900838,LOC107715960,LOC107583551,LOC107553500,LOC107670849,LOC107689802 coding downstream 70170 12921760 ~ 12950947 (-)
LOC103046657 NA coding downstream 185569 12821915 ~ 12835548 (-)
LOC103024740 LOC103024740,LOC108413681 coding downstream 286013 12730626 ~ 12735104 (-)
yipf4 yipf4,LOC107744423,LOC107670878,LOC106576945 coding downstream 496280 12519463 ~ 12524837 (-)
znf593 znf593 coding upstream 1731 13039037 ~ 13048574 (-)
LOC103026300 map4k3,LOC105006890,LOC107715980,LOC107654892,LOC105893436 coding upstream 55425 13092731 ~ 13135979 (-)
thumpd2 NA coding upstream 102148 13139454 ~ 13150675 (-)
LOC103022962 NA coding upstream 143715 13181021 ~ 13187932 (-)
LOC103026512 LOC108431645 coding upstream 770795 13808101 ~ 13819661 (-)
G80168 NA non-coding downstream 45817 12913199 ~ 12975300 (-)
G80125 slc16a12,slc16a12a,LOC107689836,LOC107715954,LOC107744897,LOC107583546 non-coding downstream 202475 12818389 ~ 12818642 (-)
G80105 pank1,pank1a,LOC107689800,LOC107553481 non-coding downstream 229530 12782613 ~ 12791587 (-)
G80060 NA non-coding downstream 437256 12583233 ~ 12583861 (-)
G80047 NA non-coding downstream 477845 12540145 ~ 12543272 (-)
G80243 NA non-coding upstream 12457 13049763 ~ 13051013 (-)
G80253 NA non-coding upstream 101310 13138616 ~ 13138886 (-)
G80258 NA non-coding upstream 108946 13146252 ~ 13146698 (-)
G80269 NA non-coding upstream 139552 13176858 ~ 13178927 (-)
G80288 NA non-coding upstream 222156 13259462 ~ 13266530 (-)
LOC103046962 ptena,LOC108411875,LOC107670848,LOC101171856,LOC105900832,LOC105940225,LOC104929647,LOC103387686 other downstream 108722 12871989 ~ 12912395 (-)
edaradd edaradd other downstream 407386 12585162 ~ 12613731 (-)
ncmap NA other downstream 648313 12334399 ~ 12372804 (-)
G79945 NA other downstream 829089 12157586 ~ 12192028 (-)
G79865 NA other downstream 1049178 11969441 ~ 11971939 (-)
LOC111193198 NA other upstream 138730 13176036 ~ 13176676 (-)
LOC103027799 rgs7a,LOC108431643,LOC107583631,LOC107668625,LOC107750853,LOC108269497 other upstream 788761 13826067 ~ 13919850 (-)
LOC111193139 NA other upstream 918535 13955841 ~ 13956580 (-)
LOC103028126 LOC108431632 other upstream 931299 13968605 ~ 13979750 (-)
G80522 rpl13a,LOC107670882,LOC107583572,LOC107583227 other upstream 1076818 14114124 ~ 14117650 (-)

Expression


Co-expression Network