RNA id: TU108111


Basic Information

Item Value
RNA id TU108111
length 1130
lncRNA type inter_gene
GC content 0.23
exon number 3
gene id G80243
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 13049763 ~ 13051013 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atagatagatagatagatagattgatacaTATGAGCAAAAAGAAAacactaaatacaaaaaaaaaacattgacagatacataaatagacagatagatagatagaatagatagatagatacatagatagaatagatagatacatagatagatagataacgaGTAAAAGTAAGACccctaaatataaaaaatgttgaaatagaTAGATAACGATCAAAAGAAGACacctaaaaatgaaaaagagatgATACATATGAGCAAAAGAataaactaaatacaaaaaagttgacagatacataaatagataaacaaagaaataaacacttaaacatgaaaagatagatagatagatagatagatagatagataacgaGTAAAAGTGAGActcctaaatataaaaaagttgacATAGATAGGTAATGATCAAATAAGAACTTAAACATGAAAAAGTAAATAGATACATAAAAatcgatagagagagagagagatccttTAAACAGAcccttattaaaaaaatataaaaaatttaagtCAGATAGAAAacactaaatacaaaaaaagttgatagatagatagatagatagatagataattatcaaataaacacttaaacatgaaaagatagatagatagatacataaatagatagataatgaTCAAATCAACAcgtaaacatgaaaaaatagatagattataaaataagacttaaatatgaaataagttgatataatatagatagataatgaTCAAAAGAAGacacctaaaaataaaaaagatagatagatagatagatagataacgaGTAAAAGTGAGACCCctaaatttacaaaaatgttgagatagatagataacgaTCAAAAGAAGACacctaaaaattaaaaagagaaagtaaatagatagatagataatgatcaaataaacacttaaacatgaAAAAGTAAATAGATACATAAGtagatacataaaaaaaaaatatatatagatagatagatagatagatagtgagtaaaataagacttaaatatgaaataagttgatataatatagatagataatgaTCAAAAGAAGacacctaaaaataaaaaagatagaaCAATTCAGTTTTAATGTACATGTTTTCAGATTTCTCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108101 lncRNA downstream 23330 13021117 ~ 13026433 (-) True selenon
TU107999 lncRNA downstream 74463 12913199 ~ 12975300 (-) True G80168
TU107976 lncRNA downstream 150591 12871990 ~ 12899172 (-) False LOC103046962
TU107942 lncRNA downstream 231121 12818389 ~ 12818642 (-) True G80125
TU107919 lncRNA downstream 258176 12782613 ~ 12791587 (-) True G80105
TU108121 lncRNA upstream 87603 13138616 ~ 13138886 (-) True G80253
TU108127 lncRNA upstream 95239 13146252 ~ 13146698 (-) True G80258
TU108140 lncRNA upstream 125023 13176036 ~ 13176419 (-) True LOC111193198
XR_002650328.1 lncRNA upstream 125323 13176336 ~ 13176619 (-) False LOC111193198
TU108142 lncRNA upstream 125845 13176858 ~ 13178927 (-) True G80269
XM_007244590.3 mRNA downstream 1189 13039037 ~ 13048574 (-) True znf593
XM_022672736.1 mRNA downstream 1190 13040670 ~ 13048573 (-) False znf593
XM_007244589.3 mRNA downstream 12457 13023669 ~ 13037306 (-) False selenon
XM_007244690.3 mRNA downstream 82128 12956370 ~ 12967635 (-) True LOC103025372
XM_007244585.3 mRNA downstream 98816 12921760 ~ 12950947 (-) True LOC103047466
XM_022672742.1 mRNA upstream 41718 13092731 ~ 13135979 (-) False LOC103026300
XM_022672741.1 mRNA upstream 41718 13092731 ~ 13135979 (-) True LOC103026300
XM_007244595.3 mRNA upstream 88441 13139454 ~ 13150675 (-) True thumpd2
XM_007244592.3 mRNA upstream 130008 13181021 ~ 13187932 (-) True LOC103022962
XM_022672749.1 mRNA upstream 757088 13808101 ~ 13819661 (-) True LOC103026512
TU107975 other downstream 137383 12876039 ~ 12912380 (-) False LOC103046962
TU107863 other downstream 436278 12585242 ~ 12613485 (-) False edaradd
TU107689 other downstream 857735 12157586 ~ 12192028 (-) True G79945
TU107591 other downstream 1077824 11969964 ~ 11971939 (-) True G79865
TU107228 other downstream 1865924 11097167 ~ 11183839 (-) False ltbp1
XR_002650329.1 other upstream 125323 13176336 ~ 13176676 (-) False LOC111193198
TU108365 other upstream 775054 13826067 ~ 13830800 (-) False LOC103027799
XR_002650282.1 other upstream 904828 13955841 ~ 13956580 (-) True LOC111193139
XR_002650333.1 other upstream 917592 13968605 ~ 13979750 (-) False LOC103028126
TU108461 other upstream 1063111 14114124 ~ 14117650 (-) True G80522

Expression Profile