G86211


Basic Information

Item Value
gene id G86211
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 36474071 ~ 36476268 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU116034
gagtgtatttgtttaaagttaggactagtttaaagttatcttcattgaaaagtacagtgcttttccttcaaaaataaggacgtttcaatgtgaccccaaacttttgaacggtagtgtatatatctCTGTCATTTTCAGTACAGTGATAGCGGTGCCCGGAGATTTACCTGCACTACGGGATGTAAAccgtgttttttaataaacttcttattGCACTTTGTgcaagttattaatgccttgtttttaaattgtagggcactccggattctagcaaggaggtgtggagcttctttgagctggataacggtgtaaaaagcgattttaTCACCCAGTCGGAAGGaggtttggacaaactgtttaaatttctggatctcagaacgctgtgggagaatggaggtgtgctattcatcaaagataagttttttttttttttttttttttaccagagttcttctttaagattccttaaatgtctcattccatcgtttttttattcattttaaattgtcTAGTCATGGTCTTtattatgaataaatgccatgtgagccattttttgtgtttctgtatagccctgCTTAACTGATTTTTTGgactctgaagaaagacagaattTCGGCTCtttctcatgaatattcatagaTGGATGGAGAACATATCGAGAGAGAGACTTATAGtattatacaaaaaacaaaaaaaaagtggattttagcagaaggagatctttaaacctttaaaaatattttttatatgtacatatctatattacaaacatggttctttataagaaacacaaaAGTGGTCCACTatggaatataaaataatacctttgcagtaggggtgtgccatatcgtatgcaataatatcaccaacatttttgaatatcgtgaacaatatcagaccctgaaatatcgtgccatatcacccacctactacttttttactgtttttatattaatattatatgcaataacatcattttatttaaattttctagcagtagtgtattcttgactttttttttttttattattcagtggtttgtcatatcgccaaaagtatcgttatcgcaaaaataccatgaaatatcgtgattatATTTccgggccatatcgcccacccctactttacaggactattattttaatattagtgtgtaaaaaaagtgtgtgaCTGGCTCTGCAGCTCTTGTGAGAGCTCTGGCTTTTACTGAGGTTAATGACTTTGAGTCGAGTGGGTCAATAAACTGTGCGCCTGAATGTTAGTAATCATAAAGCCTCAGATAATGAACCAATTATAAAAATTCTATGATCAATTAAGTATTAATACTAATACACAAATATACTGTAAGTtcatatgaaaataaatagtGTTCTTTCTggatttttcatgttttcatcCAAGCTGTACGTCAAATTTTGTGTATTAGTTACtagaaaaatgtattcatttcaTTCACTTGATTCACTTTAACTCAATTGAATCATCCCCAGATTCACATACAACTCAAACTGTGCACTGCAAACACTGCAGCCCAGAGaaaacttgttttaaaaaaaaataaacttacaaaaaaataaaaaataagatcaaAATCTAGTAGTGCAACACCTCCCTACAGCCCCAACACATTAAAATTACAGgttagtaaaaataatacatcaTACAGCTAAAGcacatcaacacaaatcaaaatGATTCAACTCCACTGATGCAAATTGTGGTTGATTAGCAAAATGTACTTTGAGCTTTGAGCTGTTTGAGGTAAACCAATCAAACAAGAACAATTTAAACGGCTTAAAACAACTGATTTAGCAAATGATTTCTCTTAATTCAACACAATACACCTCTATTAATGACTACTGCAGTTCTAGATTTATTCAACTAATTCATAACAAGCTTAAGTGTCTTTAGTACTCAGTAGAACTGCACATGGGATGAGTAGCCAGATAAAATGTTCTTATGGGCAGTGACCACTAGAGTTCACTAATATTcatgagtttttattttgcaacaGCTTTCTATAAATCCCACCAAAGATTTTTACAGGGTTCAAGTAGTGCTGGACGATTGtgacaaatcttttt
>TU116035
gagtgtatttgtttaaagttaggactagtttaaagttatcttcattgaaaagtacagtgcttttccttcaaaaataaggacgtttcaatgtgaccccaaacttttgaacggtagtgtatatatctCTGTCATTTTCAGTACAGTGATAGCGGTGCCCGGAGATTTACCTGCACTACGGGATGTAAAccgtgttttttaataaacttcttattGCACTTTGTgcaagttattaatgccttgtttttaaattgtagggcactccggattctagcaaggaggtgtggagcttctttgagctggataacggtgtaaaaagcgattttaTCACCCAGTCGGAAGGaggtttggacaaactgtttaaatttctggatctcagaacgctgtgggagaatggaggtgtgctattcatcaaagataagttttttttttttttttttttttaccagagttcttctttaagattccttaaatgtctcattccatcgtttttttattcattttaaattgtcTAGTCATGGTCTTtattatgaataaatgccatgtgagccattttttgtgtttctgtatagccctgCTTAACTGATTTTTTGgactctgaagaaagacagaattTCGGCTCtttctcatgaatattcatagaTGGATGGAGAACATATCGAGAGAGAGACTTATAGtattatacaaaaaacaaaaaaaaagtggattttagcagaaggagatctttaaacctttaaaaatattttttatatgtacatatctatattacaaacatggttctttataagaaacacaaaAGTGGTCCACTatggaatataaaataatacctttgcagtaggggtgtgccatatcgtatgcaataatatcaccaacatttttgaatatcgtgaacaatatcagaccctgaaatatcgtgccatatcacccacctactacttttttactgtttttatattaatattatatgcaataacatcattttatttaaattttctagcagtagtgtattcttgactttttttttttttattattcagtggtttgtcatatcgccaaaagtatcgttatcgcaaaaataccatgaaatatcgtgattatATTTccgggccatatcgcccacccctactttacaggactattattttaatattagtgtgtaaaaaaagtgtgtgaCTGGCTCTGCAGCTCTTGTGAGAGCTCTGGCTTTTACTGAGGTTAATGACTTTGAGTCGAGTGGGTCAATAAACTGTGCGCCTGAATGTTAGTAATCATAAAGCCTCAGATAATGAACCAATTATAAAAATTCTATGATCAATTAAGTATTAATACTAATACACAAATATACTGTAAGTtcatatgaaaataaatagtGTTCTTTCTggatttttcatgttttcatcCAAGCTGTACGTCAAATTTTGTGTATTAGTTACtagaaaaatgtattcatttcaTTCACTTGATTCACTTTAACTCAATTGAATCATCCCCAGATTCACATACAACTCAAACTGTGCACTGCAAACACTGCAGCCCAGAGaaaacttgttttaaaaaaaaataaacttacaaaaaaataaaaaataagatcaaAATCTAGTAGTGCAACACCTCCCTACAGCCCCAACACATTAAAATTACAGgttagtaaaaataatacatcaTACAGCTAAAGcacatcaacacaaatcaaaatGATTCAACTCCACTGATGCAAATTGTGGTTGATTAGCAAAATGTACTTTGAGCTTTGAGCTGTTTGAGGTAAACCAATCAAACAAGAACAATTTAAACGGCTTAAAACAACTGATTTAGCAAATGATTTCTCTTAATTCAACACAATACACCTCTATTAATGACTACTGCAGTTCTAGATTTATTCAACTAATTCATAACAAGCTTAAGTGTCTTTAGTACTCAGTAGAACTGCACATGGGATGAGTAGCCAGATAAAATGTTCTTATGGGCAGTGACCACTAGAGTTCACTAATATTcatgagtttttattttgcaacaGCTTTCTATAAATCCCACCAAAGATTTTTACAGGGTTCAAGTAGTGCTGGACGATTGtgacaaatcttttttttttttaccaaaaaagtccgattttttattataatcgATTCCCCCCCTAGCCAAAATTAAAcaacagatgacaaagaaatggttcaaaactaggtttacgtgtaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116034 False 2084 lncRNA 0.33 1 36474185 36476268
TU116035 True 2198 lncRNA 0.33 1 36474071 36476268

Neighbor

gene id symbol gene type direction distance location
tdp1 tdp1 coding downstream 428961 35969637 ~ 36045110 (-)
kcnk13 kcnk13,LOC107680770,LOC107588297,LOC107751801,LOC107755770,LOC107693081 coding downstream 539175 35921481 ~ 35934896 (-)
LOC103039887 LOC108437743 coding downstream 562226 35891077 ~ 35911845 (-)
LOC103031708 LOC103031708 coding downstream 755859 35694549 ~ 35718212 (-)
LOC103042065 LOC108437746 coding downstream 841316 35607086 ~ 35632755 (-)
adck1 adck1,LOC107740534,LOC107680795,LOC107751735,LOC107676278 coding upstream 668229 37144497 ~ 37395219 (-)
slirp slirp coding upstream 924320 37400588 ~ 37403021 (-)
hhipl1 hhipl1,LOC107740569,LOC107668615,LOC107680789,LOC107588281 coding upstream 1125140 37601408 ~ 37617010 (-)
vrk1 vrk1,LOC106602366 coding upstream 2188857 38665125 ~ 38698331 (-)
LOC111193258 NA coding upstream 2295760 38772028 ~ 38781288 (-)
G86210 NA non-coding downstream 39 36471917 ~ 36474032 (-)
G86205 ston2 non-coding downstream 19851 36434710 ~ 36454220 (-)
G86203 NA non-coding downstream 71350 36402512 ~ 36402721 (-)
G86121 NA non-coding downstream 309819 36162532 ~ 36164252 (-)
G86032 NA non-coding downstream 570598 35903069 ~ 35903473 (-)
G86212 NA non-coding upstream 1393 36477661 ~ 36478630 (-)
G86246 NA non-coding upstream 640732 37117000 ~ 37117209 (-)
G86294 alkbh1 non-coding upstream 929308 37405576 ~ 37409705 (-)
G86301 NA non-coding upstream 951715 37427983 ~ 37428393 (-)
G86308 NA non-coding upstream 967278 37443546 ~ 37444031 (-)
G85902 tfb1m other downstream 1179037 35288232 ~ 35295034 (-)
daam2 daam2 other downstream 2002466 34274391 ~ 34471605 (-)
rbks rbks,LOC107553733,LOC107656748 other downstream 2461509 33955195 ~ 34012562 (-)
G85618 slc4a1ap other downstream 2634442 33834012 ~ 33839629 (-)
G85550 NA other downstream 2955400 33509680 ~ 33518671 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other upstream 112636 36588904 ~ 37101581 (-)
G86432 NA other upstream 1506606 37982874 ~ 38069052 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other upstream 3331862 39808130 ~ 39858569 (-)
LOC111193261 NA other upstream 4057100 40533368 ~ 40536334 (-)
LOC103044865 NA other upstream 4286404 40762672 ~ 40770501 (-)

Expression


Co-expression Network