LOC103040637 (si:dkey-16j16.4,LOC108423460,LOC107697539,LOC107566112,LOC107553735,LOC107656750,LOC108270219)


Basic Information

Item Value
gene id LOC103040637
gene name si:dkey-16j16.4,LOC108423460,LOC107697539,LOC107566112,LOC107553735,LOC107656750,LOC108270219
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 33857299 ~ 33910007 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673192.1
tgagtgtgtgagtgcgtgcgtgagtgagtgagtgtgtgatgtgtgtgagtgtgtgtgagtgtgtgtgtgagtgagagagggagggagcagCAGAAAGGAGAAAATTAGTGTTTTATAGGAGCTTTAGGAGCTTTTGGAGGAGAGGAGTTCAGCTGGGTTAGGCTTTGTTAGgttggtacacacacacacacattaggatactacacacactaagatacacacacacacacacacacacacacagtgtccaGGTCATGTTGTGTTCTTTAGGAAAGTTTTCCCTTTGCTAGTTTTGCTCCAGCACTGTGTTGTTGAGTATAGAGCTGGGCAGAGATGCTGTGTTTGGAGCAGTTTTGAAGTTTTCTGATGGAGCTTGTGGTTTTGGTTGCTGGTGAAAGCAGGCtagatctgctgctgctgcttctgctgagCTCTGACTGCCTTTCCTGGACCCCTCCAGAGCACACACTGTAAGTGGGAGCTGATTGACTTTATAGATTAGCCAGATGTCTGGTGAGCTAAGCCAGATATGAATGTGTAGATAGAGTTTTGGAGGAATCAGACTAAAGAAGCCTCACTGAAGAAGACTCATCCTGGTCAGGATGCTGAAGACCCTCACTAAAAAGCTCAGAAGACATTCCCTCAATGAAATCCATCCTTTTCAACTGAAGATTTCCTACCATGGCAGCGAGGAGGGTGGAGAGAGTGAGGATTCTGAAGGGGAGAATCAGGAGCTGGCACAGATTGATagagAACGCAGGAGGAACTGTGTTCTGACCCCTCTGGCCACAAGTCAGCAGCACAACCAGGGTCTGCTCTCTCCGGCCCACCTGCGGAGATTAAGGCTGCTGCTGGAGCCCGCGATGGACCGGCACAGTtcagaggaggagctggagcgtATTGCAGGGGCCACCGGCACAGAGGGCGGCCGCAAATGGCCCCGACACAGCGAACTCAGCAGCGCCTCCAGTGACGAGGAGGTGAAAGATCTGTGTGAGCCAAGTGCTGGAGCCCGTCTGAGTGCCACCTCGCCGAGCCCTGTTCTCTTCAGCTCCTCTCCGCCCAGAGGCCTCAAACCCCCACCCACCATGGCCACCACCCGCCTCTCCGCCAGGCCCATCATCCTTAGTCATTTTGAGCAGCCCTCCATGCCCTATTGGAGGCACCGGCCCTCTTACACAGGAGAGCCTGGCCGACCCAGCTTAGACCTGGAGAAGATGCAGCAGAAAATGCTCCTGAAAAAGAACTGTGGAGGCAAAACAAGAACTATAAAGATCCGGAACCTGAGCAGCAGCCGTCACCCTCCCAGATACTCCTATGACCCGTCCATCTATGCCTTCCGGTCTCTGAGCACAGCACCGCCCTGCAGCCCCCTGCTCTCCAGCGAGGAACCTCCGTGTGCCTGAGGAAAACGACGAAAAACGCTTCAGAGACTAAACAGCAGAGTTTGTTGGACCAAGATTTCCCATATTAGGACAAGAGACAATGTAGTTGTCCTGTTATTCGTCAGGATTCTAGCCTGAACAAAGCCCCGCTTGTTGAGAGTTGTTGATAAAACAGGAAGTCTAGAGGGAATGGCTGAATGAACAGGTGGAACAGGATGATCAGGGAGTTGGGCAATGTTGTCTGAAGCTGTTTCACCCGCTTTTGGCTTTTTGACCCTATTGATCCTATTCTCAGGAAAGCCCTTCGAAACCTGCTACAATGACAAGGCCATAGCCACTGTAGTGAACTGAAAACAGCAGGGCCACATCCAACAGGAGATAAACCAGCATAAATTGGTCAGTGGTAAATTCCACCACAAGGAAAATGCCTCAAAACTGGccactttttaatgtttcaggTATACATTTGTTCCATTGCATTGAGTCGTGCACATCTTCACATATTGAAGATCTGTAGAAGGTCTGAACCAGGAGAATGTGTTGATTAAAGTTGATTAAAGTTCTGAAAGGAGCAAGTCGGTAACAGTTGCTGATTGGACGTTTGGAGTGTTTTTGTTATATTGAAAGGTATTACCACCAGAAAGATCAGGACACCAGGAGGTTTATAAGCATAGAAGAATTCGCTAGTAGCCACAAATAAGACTTTTTGGTGAACAGGTTTGTCTAATCGTTCAATAAATACTGATTAATATGATAACTGATTGTGTGATCTAAAGATCAGGACTATCTGGTGAATGCTTTAGTGCTTGTCTAATGTGTACTGTTCTTTGACAATACGTACAGTATATAGACAATAATAAACGAGAATCATGGTACTAGTCCAGCTTAGTCCAGAGCATTTAAGCATGCAAATCTGTTGAACAGATACACAGTGTGATGTGCCTAAACcagtgactgtagaaaacatgaTGCTGTTGCCCATTATATTGGTTCTGTTCTATAAAATTGAAGACAAAAATatctaatgtttatttaatgttgtcacattaaaaaaaaacgagatTGTAGAGACTAGGGAGTCAGCAATAGGCGGCACaagggccagatgtggcccgcaagcat

Function

NR:

description
PREDICTED: uncharacterized protein LOC108423460 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673192.1 True 2507 mRNA 0.47 6 33857299 33910007

Neighbor

gene id symbol gene type direction distance location
supt7l supt7l,LOC107726086,LOC107656753,LOC107553729,LOC107737450,LOC107697525 coding downstream 27556 33820065 ~ 33829743 (-)
LOC103041514 lrfn2,LOC107703608,LOC107754970 coding downstream 381610 33201802 ~ 33475689 (-)
clip4 clip4,LOC107676111 coding downstream 825910 32938106 ~ 33031389 (-)
LOC111193155 NA coding downstream 1373466 32442573 ~ 32483833 (-)
LOC103036987 LOC103036987 coding downstream 1456130 32394659 ~ 32401169 (-)
zdhhc14 zdhhc14,LOC106574720,LOC105897223 coding upstream 889132 34799139 ~ 34867074 (-)
LOC103041141 LOC108423399 coding upstream 960138 34870145 ~ 35195330 (-)
cldn20 cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC108443299,LOC107728965 coding upstream 1411462 35321469 ~ 35337462 (-)
tiam2 tiam2 coding upstream 1438177 35348184 ~ 35510745 (-)
scaf8 scaf8,LOC107749595,LOC107675315 coding upstream 1647201 35557208 ~ 35600287 (-)
G85617 NA non-coding downstream 7530 33848560 ~ 33849769 (-)
LOC111193147 NA non-coding downstream 53778 33765923 ~ 33803521 (-)
G85561 NA non-coding downstream 220726 33636239 ~ 33636573 (-)
G85542 NA non-coding downstream 364278 33492460 ~ 33493021 (-)
G85528 NA non-coding downstream 547206 33247051 ~ 33310093 (-)
LOC111193148 NA non-coding upstream 28453 33938460 ~ 33938701 (-)
G85654 NA non-coding upstream 296222 34206229 ~ 34206807 (-)
G85659 fosl2,LOC107656746,LOC107726077,LOC107553732 non-coding upstream 312898 34222905 ~ 34226742 (-)
G85660 NA non-coding upstream 320884 34230891 ~ 34231119 (-)
G85687 NA non-coding upstream 357449 34267456 ~ 34331347 (-)
G85618 slc4a1ap other downstream 17670 33834012 ~ 33839629 (-)
G85550 NA other downstream 338628 33509680 ~ 33518671 (-)
G85501 NA other downstream 745565 33111474 ~ 33111734 (-)
LOC111193156 NA other downstream 1365479 32449631 ~ 32491820 (-)
mrpl34 mrpl34 other downstream 3034601 30820119 ~ 30822698 (-)
rbks rbks,LOC107553733,LOC107656748 other upstream 45188 33955195 ~ 34012562 (-)
daam2 daam2 other upstream 364384 34274391 ~ 34471605 (-)
G85902 tfb1m other upstream 1378225 35288232 ~ 35295034 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other upstream 2678897 36588904 ~ 37101581 (-)
G86432 NA other upstream 4072867 37982874 ~ 38069052 (-)

Expression


Co-expression Network