rbks (rbks,LOC107553733,LOC107656748)


Basic Information

Item Value
gene id rbks
gene name rbks,LOC107553733,LOC107656748
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 33955195 ~ 34012562 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673195.1
tatgtgtgtgtgtgtgtgtgtgtgtgtttgaggttcAGTAAGTGAACTTTGCTTGGGGTTCAGgttcacacacactgacagctcTTTTAGAGAGCAGCAGGTGATTTAACCCCCATACCTGATCATTCCCAGTCCTCCAGACTCCCCTGCACAGGAGATGACTGAAGAGGTGAGCGTTGTGGTCGTGGGCTCCTGTATGACAGATCTGGTCAGCCAGGCGCCCCGACTGCCCAAAGCTGGAGAGACGATACACGGCCAAAAGTTCTTCATCGGATTCGGCGGGAAAGGAGCGAACCAGTGTGTTCAAGCCGCTCGACTGGGAGCCAAGACCGCCATGGTTGGCAAGGTTggaaaagatttttttgggaacAACTATATTCAGAATTTCAAAGACAATGGAGTATACACAgCTTTTGTGGAGCAGACATCTGAAGCCGCGACCGGAGCTGCTTCCATCATCGTAAACGACGCAGGTGAGAATGCCATAGTCATCGTAGCGGGAGCCAACCTGCTGCTGGGAGACGAGGAGCTGCAGCGGGCGCAGGCTACCCTGGAGACGGCTAAGGTGCTGGTCTGCCAGCTGGAGATCAGCCCACATGCCTCCCTACAGGCCCTGTGGATGGCCCAGAAGAGCAACGTGAAAACCATATTTAACCCTGCCCCTGCCATTCCTGACCTCCATGCTGACTTCTACAAAGCATCGGACATCTTCTGCTGCAACGAATCAGAGGCTGAGCTGCTGACTGGGTGTCCTGTAGCTACAGTGGAGGATGCAGGACGTGTAGGCCTGGAGCTGCTGAACAGAGGCTGTGTTTCAGTCATCGTTACCCTGGGCCCTCAGGGATGCGTGGTGCTTCAGTCCACTGACCCAACGCCCAAACACATCCCCACAACCAAGGTCACCAGCGTGGACACTACGGGGGCTGGCGACAGCTTCATTGGTGCGCTGGCTTTCTACATCTCACACTATCCCACAATGCCCCTGGAGGAGATGGCCAGGAGAGCGAACCTCATCGCCGCAGTATCTGTGCAGACAACTGGCACTCAAACGTCTTATCCATTCAAGAAGGACCTGCCAGCAGAACTGTTTTAGGATAATGTATTGTTTTACTACTCTACTAACACACCTCTATCTCTAGCTCTGTTTAATGAGTCATGCCAGTCACTCTTttcttttaaacaataaaaaaacctcattgtt
>XM_022673196.1
CAGCCGCGAGTTACTGGAGAAAGAACTGAGGAGATGACTGAAGAGGTGAGCGTTGTGGTCGTGGGCTCCTGTATGACAGATCTGGTCAGCCAGGCGCCCCGACTGCCCAAAGCTGGAGAGACGATACACGGCCAAAAGTTCTTCATCGGATTCGGCGGGAAAGGAGCGAACCAGTGTGTTCAAGCCGCTCGACTGGGAGCCAAGACCGCCATGGTTGGCAAGGTTggaaaagatttttttgggaacAACTATATTCAGAATTTCAAAGACAATGGAGTATACACAgCTTTTGTGGAGCAGACATCTGAAGCCGCGACCGGAGCTGCTTCCATCATCGTAAACGACGCAGGTGAGAATGCCATAGTCATCGTAGCGGGAGCCAACCTGCTGCTGGGAGACGAGGAGCTGCAGCGGGCGCAGGCTACCCTGGAGACGGCTAAGGTGCTGGTCTGCCAGCTGGAGATCAGCCCACATGCCTCCCTACAGGCCCTGTGGATGGCCCAGAAGAGCAACGTGAAAACCATATTTAACCCTGCCCCTGCCATTCCTGACCTCCATGCTGACTTCTACAAAGCATCGGACATCTTCTGCTGCAACGAATCAGAGGCTGAGCTGCTGACTGGGTGTCCTGTAGCTACAGTGGAGGATGCAGGACGTGTAGGCCTGGAGCTGCTGAACAGAGGCTGTGTTTCAGTCATCGTTACCCTGGGCCCTCAGGGATGCGTGGTGCTTCAGTCCACTGACCCAACGCCCAAACACATCCCCACAACCAAGGTCACCAGCGTGGACACTACGGGGGCTGGCGACAGCTTCATTGGTGCGCTGGCTTTCTACATCTCACACTATCCCACAATGCCCCTGGAGGAGATGGCCAGGAGAGCGAACCTCATCGCCGCAGTATCTGTGCAGACAACTGGCACTCAAACGTCTTATCCATTCAAGAAGGACCTGCCAGCAGAACTGTTTTAGGATAATGTATTGTTTTACTACTCTACTAACACACCTCTATCTCTAGCTCTGTTTAATGAGTCATGCCAGTCACTCTTttcttttaaacaataaaaaaacctcattgtt
>XR_002650389.1
ttgtgtatgtgtgtgtgtgtgtgtgtgtgtgtttgaggttcAGTAAGTGAACTTTGCTTGGGGTTCAGgttcacacacactgacagctcTTTTAGAGAGCAGCAGGTGATTTAACCCCCATACCTGATCATTCCCAGTCCTCCAGACTCCCCTGCACAGGAGATGACTGAAGAGGTGAGCGTTGTGGTCGTGGGCTCCTGTATGACAGATCTGGTCAGCCAGGCGCCCCGACTGCCCAAAGCTGGAGAGACGATACACGGCCAAAAGTTCTTCATCGGATTCGGCGGGAAAGGAGCGAACCAGTGTGTTCAAGCCGCTCGACTGGGAGCCAAGACCGCCATGGTTGGCAAGGTTggaaaagatttttttgggaacAACTATATTCAGAATTTCAAAGACAATGGAGTATACACAgCTTTTGTGGAGCAGACATCTGAAGCCGCGACCGGAGCTGCTTCCATCATCGTAAACGACGCAGGTGAGAATGCCATAGTCATCGTAGCGGGAGCCAACCTGCTGCTGGGAGACGAGGAGCTGCAGCGGGCGCAGGCTACCCTGGAGACGGCTAAGGTGCTGGTCTGCCAGCTGGAGATCAGCCCACATGCCTCCCTACAGGCCCTGTGGATGGCCCAGAAGAGCAACGTGAAAACCATATTTAACCCTGCCCCTGCCATTCCTGACCTCCATGCTGACTTCTACAAAGCATCGGACATCTTCTGCTGCAACGAATCAGAGGCTGAGCTGCTGACTGGGTGTCCTGTAGCTACAGTGGAGGATGCAGGACGTGTAGGCCTGGAGCTGCTGAACAGAGGCTGTGTTTCAGTCATCGTTACCCTGGGCCCTCAGGGATGCGTGGTGCTTCAGTCCACTGACCCAACGCCCAAACACATCCCCACAACCAAGGTCACCAGCGTGGACACTACGCGTTACCAGAATGAACGCAATGGGTGGAGGAGGCAGACTTCGGTCAGGCAGGGTGGAGTCGGTACCAGACAAGTGTAACATTTTCCACAACCAGTCCATCACCAGACTGCACCTCTCCACTGctcctccagcacagagactgccGGGGGCTGGCGACAGCTTCATTGGTGCGCTGGCTTTCTACATCTCACACTATCCCACAATGCCCCTGGAGGAGATGGCCAGGAGAGCGA

Function

symbol description
rbks Predicted to enable ATP binding activity; metal ion binding activity; and ribokinase activity. Predicted to be involved in D-ribose catabolic process and carbohydrate phosphorylation. Predicted to act upstream of or within D-ribose metabolic process and phosphorylation. Predicted to be located in cytoplasm and nucleus. Orthologous to human RBKS (ribokinase).

NR:

description
ribokinase isoform X1

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0006014 D-ribose metabolic process biological_process
GO:0004747 ribokinase activity molecular_function

KEGG:

id description
K00852 rbsK, RBKS; ribokinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673195.1 True 1201 mRNA 0.52 9 33955195 34012557
XM_022673196.1 False 1077 mRNA 0.53 9 33955195 34008651
XR_002650389.1 False 1157 misc_RNA 0.55 10 33955389 34012562

Neighbor

gene id symbol gene type direction distance location
LOC103040637 si:dkey-16j16.4,LOC108423460,LOC107697539,LOC107566112,LOC107553735,LOC107656750,LOC108270219 coding downstream 45188 33857299 ~ 33910007 (-)
supt7l supt7l,LOC107726086,LOC107656753,LOC107553729,LOC107737450,LOC107697525 coding downstream 125452 33820065 ~ 33829743 (-)
LOC103041514 lrfn2,LOC107703608,LOC107754970 coding downstream 479506 33201802 ~ 33475689 (-)
clip4 clip4,LOC107676111 coding downstream 923806 32938106 ~ 33031389 (-)
LOC111193155 NA coding downstream 1471362 32442573 ~ 32483833 (-)
zdhhc14 zdhhc14,LOC106574720,LOC105897223 coding upstream 786577 34799139 ~ 34867074 (-)
LOC103041141 LOC108423399 coding upstream 857583 34870145 ~ 35195330 (-)
cldn20 cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC108443299,LOC107728965 coding upstream 1308907 35321469 ~ 35337462 (-)
tiam2 tiam2 coding upstream 1335622 35348184 ~ 35510745 (-)
scaf8 scaf8,LOC107749595,LOC107675315 coding upstream 1544646 35557208 ~ 35600287 (-)
LOC111193148 NA non-coding downstream 16494 33938460 ~ 33938701 (-)
G85617 NA non-coding downstream 105426 33848560 ~ 33849769 (-)
LOC111193147 NA non-coding downstream 151674 33765923 ~ 33803521 (-)
G85561 NA non-coding downstream 318622 33636239 ~ 33636573 (-)
G85542 NA non-coding downstream 462174 33492460 ~ 33493021 (-)
G85654 NA non-coding upstream 193667 34206229 ~ 34206807 (-)
G85659 fosl2,LOC107656746,LOC107726077,LOC107553732 non-coding upstream 210343 34222905 ~ 34226742 (-)
G85660 NA non-coding upstream 218329 34230891 ~ 34231119 (-)
G85687 NA non-coding upstream 254894 34267456 ~ 34331347 (-)
G85715 NA non-coding upstream 537041 34549603 ~ 34550024 (-)
G85618 slc4a1ap other downstream 115566 33834012 ~ 33839629 (-)
G85550 NA other downstream 436524 33509680 ~ 33518671 (-)
G85501 NA other downstream 843461 33111474 ~ 33111734 (-)
LOC111193156 NA other downstream 1463375 32449631 ~ 32491820 (-)
mrpl34 mrpl34 other downstream 3132497 30820119 ~ 30822698 (-)
daam2 daam2 other upstream 261829 34274391 ~ 34471605 (-)
G85902 tfb1m other upstream 1275670 35288232 ~ 35295034 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other upstream 2576342 36588904 ~ 37101581 (-)
G86432 NA other upstream 3970312 37982874 ~ 38069052 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other upstream 5795568 39808130 ~ 39858569 (-)

Expression


Co-expression Network