LOC103042065 (LOC108437746)


Basic Information

Item Value
gene id LOC103042065
gene name LOC108437746
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 35607086 ~ 35632755 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673214.1
ctctcgcagccCTGCCCACTCCTGATACAGAGAGGCACAGATGAGCAGTTAGCTGGAGCGGAAGGCTGCTGCTATACACTGAAGAGCCTGGAGCAGACGCAGCATCTCTAATAGAGCACACAGACAGAGGCTGGAGAGGAGAATAAACACTCAGCCGCAGCATCGCTATGCCAGCCCCGTGCATCAGCCTGGCAGGGCAGCAGAGGGAGTGGAGGCAGGCTGGCAGAGCTGCAGCACTGGGGCTGTCCATTCTACCAGGAGAGGGCAAGAAGAAGATGGACGGCACTGCCAGGAATAGGAGAGAGACTGGGCCCGACATGACGCCCAAACCGGAGCACAAACAAACAGGCTGTGTCCCATCTGTGCCCACATCAGCACAGCTCACTAACCACAGAAGAAATGGCAGCGCTGCAGAGTCACAAGCACTAAAGGTGGATGAGAGGTTACGACTAGCTCGTGAGCGAAGAGAGGAGCACCTCAAACAGCTCGCGAGCCGGGAGCGAGGCTGGCTGGACAGAGAGGAGAGGGCCAGGAGGTTCTACGAGAAGCACCTGGAGGAACGTCGGAAGAAGCTGGAGGAGCAGAGACAgcgggaggagaggaggaggatggcgGTGGAGGAGAAACGCAAACAGAGGcttaaagaggagagaGAGCGGTACGAATCTGTGGTGCAGAAAACCATGGAGAGGAGTCAGAAAGCCAAACAGAGagcgggcacaggtcagagggGAGGTGGCACTGCCAGGAGCAGCACAAATGCCAAACGCCGCTCTCTTAGTCAGTGGGAGATAGACCTGGTTAACCGTCTTCAGACCCCCACTATCTCTTATCTAGCCAGAAGCAGAAGTGCTGTGTGTCTGTCACGAGGAGAAGCTGTTCATGTTTGTCGACGTTCAGCTTCATGCCACTCTATGAGCTCCAGTGCTCCACAGAGAACGCGTCAGGGCGGAGGAGCGCTGCCACACAGAGCCGTCAGCAGGCCCGGGGTGAAGAACAGCAGCCACAGATCATCCAGCAAAGAACAGGGGTCAAACGGTAATCTTGAGAAAAGGCAGTGGAAGACGCCACAGTCTCACAGAGCGGCTGCTAAAGCCAACTCCAGATTAGACACGGCTCTACAGGACAAATCACTACTCTCCTCATCACCACCAGGTCCTTCAGTAAGACCGCCTCCGAGACAAGCATCTCCCAGACAGGAGTGTTTGCCTCCCCTGGCTGAGGAGGACACAGAGTCAGAGCCTGTGTCTGACTCCACTCAGTTTCAGTGTAATAAACCAGCTCCTCCGTTTCTGCGAGAAGATGCTGGACAGAACGGTCCAGTCCTGCCAAACACGGCCCCTCTGGGACCCccagctcctgctgcctgcACTCAGCCTCCCAACGtgCAAAGCTCGATTACTGCTGGGGGGCAAAGCAGACCCTCAGCAGGAACCACAGACCCTGAAGAGGCGTCCCGCCTGCTGGCGGAGAAGAGGAGACAGGCTcggctgcagagagagagagaagaggaggaacGCAGGCGGAGAGAAGAAATTGAGAGGCGAGGGAGAGAAGAGCTGGCCCGTCGGAGGGCTGAGGAGCGAGAGAGGCAGGAAGCAgaagcacagagactggaggaggagaggaagaggagggaggaggaggaacaAAGAAAGGCAGAGGAAGAGAAAGTTCAGAGGCACAGAGAGGAGGAACAAAGACTTCAGCAACAGAGGGAAGAGGAGGAGGCTCGACAGAGGCTGATAGAAGAGCAGCAGAGGCTGGAGAGAGAGCAACGCTTCCAGAGAGAGGAGTCTGAGCGGCTGGAGAGGAAGAAGCGACTAGACGAAATTATGAAAAGAACACGAAAAACAGATGCAACTGAGAAGAAACCTGCTTCCTCCAGTATCATAATGAAAGACAGTCTTCCGAATGAGAATATAAAGCCTATTCACAGTCTGCCGTTAGAAGACGTTATCAAGCTGCCCAGTCCATCAAAGGCCTCTAAGATAGCTCTGGAGAATGAGGAGGACATCCTTCCTGCAGTGGCCTTTAAAGAGCGCAGGTCCCTCCGTACTCTCACCGGCCTGGATGAGATCCAGGCTCATCAGAGAGCAGAAGTCATCTAAAGATAAACGATCACGCGATCTGCAAGGAGCCTGCAAGCCTGCACTTTCTTTATATAAgaaaacacatgcagaattgcTTCACCTGCACTTTAAGAAACCCTCTTCAACACTCTGTTTCACACCTTCAGAATAATACCGAAGGATCTGACCCCTCCTGCTCTGCTGATTGGTGTGTTTTGAGACCACGCTGCATGTTCAGTTCATGCTCTGTGggaataaagctaagctaacagcg
>XM_022673215.1
ctctcgcagccCTGCCCACTCCTGATACAGAGAGGCACAGATGAGCAGTTAGCTGGAGCGGAAGGCTGCTGCTATACACTGAAGAGCCTGGAGCAGACGCAGCATCTCTAATAGAGCACACAGACAGAGGCTGGAGAGGAGAATAAACACTCAGCCGCAGCATCGCTATGCCAGCCCCGTGCATCAGCCTGGCAGGGCAGCAGAGGGAGTGGAGGCAGGCTGGCAGAGCTGCAGCACTGGGGCTGTCCATTCTACCAGGAGAGGGCAAGAAGAAGATGGACGGCACTGCCAGGAATAGGAGAGAGTCACAAGCACTAAAGGTGGATGAGAGGTTACGACTAGCTCGTGAGCGAAGAGAGGAGCACCTCAAACAGCTCGCGAGCCGGGAGCGAGGCTGGCTGGACAGAGAGGAGAGGGCCAGGAGGTTCTACGAGAAGCACCTGGAGGAACGTCGGAAGAAGCTGGAGGAGCAGAGACAgcgggaggagaggaggaggatggcgGTGGAGGAGAAACGCAAACAGAGGcttaaagaggagagaGAGCGGTACGAATCTGTGGTGCAGAAAACCATGGAGAGGAGTCAGAAAGCCAAACAGAGagcgggcacaggtcagagggGAGGTGGCACTGCCAGGAGCAGCACAAATGCCAAACGCCGCTCTCTTAGTCAGTGGGAGATAGACCTGGTTAACCGTCTTCAGACCCCCACTATCTCTTATCTAGCCAGAAGCAGAAGTGCTGTGTGTCTGTCACGAGGAGAAGCTGTTCATGTTTGTCGACGTTCAGCTTCATGCCACTCTATGAGCTCCAGTGCTCCACAGAGAACGCGTCAGGGCGGAGGAGCGCTGCCACACAGAGCCGTCAGCAGGCCCGGGGTGAAGAACAGCAGCCACAGATCATCCAGCAAAGAACAGGGGTCAAACGGTAATCTTGAGAAAAGGCAGTGGAAGACGCCACAGTCTCACAGAGCGGCTGCTAAAGCCAACTCCAGATTAGACACGGCTCTACAGGACAAATCACTACTCTCCTCATCACCACCAGGTCCTTCAGTAAGACCGCCTCCGAGACAAGCATCTCCCAGACAGGAGTGTTTGCCTCCCCTGGCTGAGGAGGACACAGAGTCAGAGCCTGTGTCTGACTCCACTCAGTTTCAGTGTAATAAACCAGCTCCTCCGTTTCTGCGAGAAGATGCTGGACAGAACGGTCCAGTCCTGCCAAACACGGCCCCTCTGGGACCCccagctcctgctgcctgcACTCAGCCTCCCAACGtgCAAAGCTCGATTACTGCTGGGGGGCAAAGCAGACCCTCAGCAGGAACCACAGACCCTGAAGAGGCGTCCCGCCTGCTGGCGGAGAAGAGGAGACAGGCTcggctgcagagagagagagaagaggaggaacGCAGGCGGAGAGAAGAAATTGAGAGGCGAGGGAGAGAAGAGCTGGCCCGTCGGAGGGCTGAGGAGCGAGAGAGGCAGGAAGCAgaagcacagagactggaggaggagaggaagaggagggaggaggaggaacaAAGAAAGGCAGAGGAAGAGAAAGTTCAGAGGCACAGAGAGGAGGAACAAAGACTTCAGCAACAGAGGGAAGAGGAGGAGGCTCGACAGAGGCTGATAGAAGAGCAGCAGAGGCTGGAGAGAGAGCAACGCTTCCAGAGAGAGGAGTCTGAGCGGCTGGAGAGGAAGAAGCGACTAGACGAAATTATGAAAAGAACACGAAAAACAGATGCAACTGAGAAGAAACCTGCTTCCTCCAGTATCATAATGAAAGACAGTCTTCCGAATGAGAATATAAAGCCTATTCACAGTCTGCCGTTAGAAGACGTTATCAAGCTGCCCAGTCCATCAAAGGCCTCTAAGATAGCTCTGGAGAATGAGGAGGACATCCTTCCTGCAGTGGCCTTTAAAGAGCGCAGGTCCCTCCGTACTCTCACCGGCCTGGATGAGATCCAGGCTCATCAGAGAGCAGAAGTCATCTAAAGATAAACGATCACGCGATCTGCAAGGAGCCTGCAAGCCTGCACTTTCTTTATATAAgaaaacacatgcagaattgcTTCACCTGCACTTTAAGAAACCCTCTTCAACACTCTGTTTCACACCTTCAGAATAATACCGAAGGATCTGACCCCTCCTGCTCTGCTGATTGGTGTGTTTTGAGACCACGCTGCATGTTCAGTTCATGCTCTGTGggaataaagctaagctaacagcg
>XM_022673216.1
ctctcgcagccCTGCCCACTCCTGATACAGAGAGGCACAGATGAGCAGTTAGCTGGAGCGGAAGGCTGCTGCTATACACTGAAGAGCCTGGAGCAGACGCAGCATCTCTAATAGAGCACACAGACAGAGGCTGGAGAGGAGAATAAACACTCAGCCGCAGCATCGCTATGCCAGCCCCGTGCATCAGCCTGGCAGGGCAGCAGAGGGAGTGGAGGCAGGCTGGCAGAGCTGCAGCACTGGGGCTGTCCATTCTACCAGGAGAGGGCAAGAAGAAGATGGACGGCACTGCCAGGAATAGGAGAGAGACTGGGCCCGACATGACGCCCAAACCGGAGCACAAACAAACAGGCTGTGTCCCATCTGTGCCCACATCAGCACAGCTCACTAACCACAGAAGAAATGGCAGCGCTGCAGAGTCACAAGCACTAAAGGTGGATGAGAGGTTACGACTAGCTCGTGAGCGAAGAGAGGAGCACCTCAAACAGCTCGCGAGCCGGGAGCGAGGCTGGCTGGACAGAGAGGAGAGGGCCAGGAGGTTCTACGAGAAGCACCTGGAGGAACGTCGGAAGAAGCTGGAGGAGCAGAGACAgcgggaggagaggaggaggatggcgGTGGAGGAGAAACGCAAACAGAGGcttaaagaggagagaGAGCGGTACGAATCTGTGGTGCAGAAAACCATGGAGAGGAGTCAGAAAGCCAAACAGAGagcgggcacaggtcagagggGAGGTGGCACTGCCAGGAGCAGCACAAATGCTGTTCATGTTTGTCGACGTTCAGCTTCATGCCACTCTATGAGCTCCAGTGCTCCACAGAGAACGCGTCAGGGCGGAGGAGCGCTGCCACACAGAGCCGTCAGCAGGCCCGGGGTGAAGAACAGCAGCCACAGATCATCCAGCAAAGAACAGGGGTCAAACGGTAATCTTGAGAAAAGGCAGTGGAAGACGCCACAGTCTCACAGAGCGGCTGCTAAAGCCAACTCCAGATTAGACACGGCTCTACAGGACAAATCACTACTCTCCTCATCACCACCAGGTCCTTCAGTAAGACCGCCTCCGAGACAAGCATCTCCCAGACAGGAGTGTTTGCCTCCCCTGGCTGAGGAGGACACAGAGTCAGAGCCTGTGTCTGACTCCACTCAGTTTCAGTGTAATAAACCAGCTCCTCCGTTTCTGCGAGAAGATGCTGGACAGAACGGTCCAGTCCTGCCAAACACGGCCCCTCTGGGACCCccagctcctgctgcctgcACTCAGCCTCCCAACGtgCAAAGCTCGATTACTGCTGGGGGGCAAAGCAGACCCTCAGCAGGAACCACAGACCCTGAAGAGGCGTCCCGCCTGCTGGCGGAGAAGAGGAGACAGGCTcggctgcagagagagagagaagaggaggaacGCAGGCGGAGAGAAGAAATTGAGAGGCGAGGGAGAGAAGAGCTGGCCCGTCGGAGGGCTGAGGAGCGAGAGAGGCAGGAAGCAgaagcacagagactggaggaggagaggaagaggagggaggaggaggaacaAAGAAAGGCAGAGGAAGAGAAAGTTCAGAGGCACAGAGAGGAGGAACAAAGACTTCAGCAACAGAGGGAAGAGGAGGAGGCTCGACAGAGGCTGATAGAAGAGCAGCAGAGGCTGGAGAGAGAGCAACGCTTCCAGAGAGAGGAGTCTGAGCGGCTGGAGAGGAAGAAGCGACTAGACGAAATTATGAAAAGAACACGAAAAACAGATGCAACTGAGAAGAAACCTGCTTCCTCCAGTATCATAATGAAAGACAGTCTTCCGAATGAGAATATAAAGCCTATTCACAGTCTGCCGTTAGAAGACGTTATCAAGCTGCCCAGTCCATCAAAGGCCTCTAAGATAGCTCTGGAGAATGAGGAGGACATCCTTCCTGCAGTGGCCTTTAAAGAGCGCAGGTCCCTCCGTACTCTCACCGGCCTGGATGAGATCCAGGCTCATCAGAGAGCAGAAGTCATCTAAAGATAAACGATCACGCGATCTGCAAGGAGCCTGCAAGCCTGCACTTTCTTTATATAAgaaaacacatgcagaattgcTTCACCTGCACTTTAAGAAACCCTCTTCAACACTCTGTTTCACACCTTCAGAATAATACCGAAGGATCTGACCCCTCCTGCTCTGCTGATTGGTGTGTTTTGAGACCACGCTGCATGTTCAGTTCATGCTCTGTGggaataaagctaagctaacagcg
>XM_022673217.1
ctctcgcagccCTGCCCACTCCTGATACAGAGAGGCACAGATGAGCAGTTAGCTGGAGCGGAAGGCTGCTGCTATACACTGAAGAGCCTGGAGCAGACGCAGCATCTCTAATAGAGCACACAGACAGAGGCTGGAGAGGAGAATAAACACTCAGCCGCAGCATCGCTATGCCAGCCCCGTGCATCAGCCTGGCAGGGCAGCAGAGGGAGTGGAGGCAGGCTGGCAGAGCTGCAGCACTGGGGCTGTCCATTCTACCAGGAGAGGGCAAGAAGAAGATGGACGGCACTGCCAGGAATAGGAGAGAGACTGGGCCCGACATGACGCCCAAACCGGAGCACAAACAAACAGGCTGTGTCCCATCTGTGCCCACATCAGCACAGCTCACTAACCACAGAAGAAATGGCAGCGCTGCAGAGTCACAAGCACTAAAGGTGGATGAGAGGTTACGACTAGCTCGTGAGCGAAGAGAGGAGCACCTCAAACAGCTCGCGAGCCGGGAGCGAGGCTGGCTGGACAGAGAGGAGAGGGCCAGGAGGTTCTACGAGAAGCACCTGGAGGAACGTCGGAAGAAGCTGGAGGAGCAGAGACAgcgggaggagaggaggaggatggcgGTGGAGGAGAAACGCAAACAGAGGcttaaagaggagagaGAGCGGTACGAATCTGTGGTGCAGAAAACCATGGAGAGGAGTCAGAAAGCCAAACAGAGagcgggcacaggtcagagggGAGGTGGCACTGCCAGGAGCAGCACAAATGCTTCATGCCACTCTATGAGCTCCAGTGCTCCACAGAGAACGCGTCAGGGCGGAGGAGCGCTGCCACACAGAGCCGTCAGCAGGCCCGGGGTGAAGAACAGCAGCCACAGATCATCCAGCAAAGAACAGGGGTCAAACGGTAATCTTGAGAAAAGGCAGTGGAAGACGCCACAGTCTCACAGAGCGGCTGCTAAAGCCAACTCCAGATTAGACACGGCTCTACAGGACAAATCACTACTCTCCTCATCACCACCAGGTCCTTCAGTAAGACCGCCTCCGAGACAAGCATCTCCCAGACAGGAGTGTTTGCCTCCCCTGGCTGAGGAGGACACAGAGTCAGAGCCTGTGTCTGACTCCACTCAGTTTCAGTGTAATAAACCAGCTCCTCCGTTTCTGCGAGAAGATGCTGGACAGAACGGTCCAGTCCTGCCAAACACGGCCCCTCTGGGACCCccagctcctgctgcctgcACTCAGCCTCCCAACGtgCAAAGCTCGATTACTGCTGGGGGGCAAAGCAGACCCTCAGCAGGAACCACAGACCCTGAAGAGGCGTCCCGCCTGCTGGCGGAGAAGAGGAGACAGGCTcggctgcagagagagagagaagaggaggaacGCAGGCGGAGAGAAGAAATTGAGAGGCGAGGGAGAGAAGAGCTGGCCCGTCGGAGGGCTGAGGAGCGAGAGAGGCAGGAAGCAgaagcacagagactggaggaggagaggaagaggagggaggaggaggaacaAAGAAAGGCAGAGGAAGAGAAAGTTCAGAGGCACAGAGAGGAGGAACAAAGACTTCAGCAACAGAGGGAAGAGGAGGAGGCTCGACAGAGGCTGATAGAAGAGCAGCAGAGGCTGGAGAGAGAGCAACGCTTCCAGAGAGAGGAGTCTGAGCGGCTGGAGAGGAAGAAGCGACTAGACGAAATTATGAAAAGAACACGAAAAACAGATGCAACTGAGAAGAAACCTGCTTCCTCCAGTATCATAATGAAAGACAGTCTTCCGAATGAGAATATAAAGCCTATTCACAGTCTGCCGTTAGAAGACGTTATCAAGCTGCCCAGTCCATCAAAGGCCTCTAAGATAGCTCTGGAGAATGAGGAGGACATCCTTCCTGCAGTGGCCTTTAAAGAGCGCAGGTCCCTCCGTACTCTCACCGGCCTGGATGAGATCCAGGCTCATCAGAGAGCAGAAGTCATCTAAAGATAAACGATCACGCGATCTGCAAGGAGCCTGCAAGCCTGCACTTTCTTTATATAAgaaaacacatgcagaattgcTTCACCTGCACTTTAAGAAACCCTCTTCAACACTCTGTTTCACACCTTCAGAATAATACCGAAGGATCTGACCCCTCCTGCTCTGCTGATTGGTGTGTTTTGAGACCACGCTGCATGTTCAGTTCATGCTCTGTGggaataaagctaagctaacagcg

Function

NR:

description
PREDICTED: ensconsin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673214.1 True 2346 mRNA 0.55 15 35607086 35632755
XM_022673215.1 False 2235 mRNA 0.55 14 35607086 35632755
XM_022673216.1 False 2232 mRNA 0.55 14 35607086 35632755
XM_022673217.1 False 2208 mRNA 0.55 14 35607086 35632755

Neighbor

gene id symbol gene type direction distance location
scaf8 scaf8,LOC107749595,LOC107675315 coding downstream 6799 35557208 ~ 35600287 (-)
tiam2 tiam2 coding downstream 96341 35348184 ~ 35510745 (-)
cldn20 cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC108443299,LOC107728965 coding downstream 269624 35321469 ~ 35337462 (-)
LOC103041141 LOC108423399 coding downstream 411756 34870145 ~ 35195330 (-)
zdhhc14 zdhhc14,LOC106574720,LOC105897223 coding downstream 740012 34799139 ~ 34867074 (-)
LOC103031708 LOC103031708 coding upstream 61794 35694549 ~ 35718212 (-)
LOC103039887 LOC108437743 coding upstream 258322 35891077 ~ 35911845 (-)
kcnk13 kcnk13,LOC107680770,LOC107588297,LOC107751801,LOC107755770,LOC107693081 coding upstream 288726 35921481 ~ 35934896 (-)
tdp1 tdp1 coding upstream 336882 35969637 ~ 36045110 (-)
adck1 adck1,LOC107740534,LOC107680795,LOC107751735,LOC107676278 coding upstream 1511742 37144497 ~ 37395219 (-)
G85955 NA non-coding downstream 1323 35604378 ~ 35605763 (-)
G85927 NA non-coding downstream 27986 35576936 ~ 35579100 (-)
G85926 NA non-coding downstream 51897 35554860 ~ 35555189 (-)
G85922 NA non-coding downstream 62660 35543952 ~ 35544426 (-)
G85915 NA non-coding downstream 226506 35375049 ~ 35380580 (-)
G85970 LOC108437745 non-coding upstream 35008 35667763 ~ 35672891 (-)
G85980 NA non-coding upstream 93394 35726149 ~ 35726664 (-)
G86015 NA non-coding upstream 116809 35749564 ~ 35749814 (-)
G86016 NA non-coding upstream 117109 35749864 ~ 35750233 (-)
G86017 NA non-coding upstream 117803 35750558 ~ 35751677 (-)
G85902 tfb1m other downstream 312052 35288232 ~ 35295034 (-)
daam2 daam2 other downstream 1135481 34274391 ~ 34471605 (-)
rbks rbks,LOC107553733,LOC107656748 other downstream 1594524 33955195 ~ 34012562 (-)
G85618 slc4a1ap other downstream 1767457 33834012 ~ 33839629 (-)
G85550 NA other downstream 2088415 33509680 ~ 33518671 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other upstream 956149 36588904 ~ 37101581 (-)
G86432 NA other upstream 2350119 37982874 ~ 38069052 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other upstream 4175375 39808130 ~ 39858569 (-)
LOC111193261 NA other upstream 4900613 40533368 ~ 40536334 (-)
LOC103044865 NA other upstream 5129917 40762672 ~ 40770501 (-)

Expression


Co-expression Network