kcnk13 (kcnk13,LOC107680770,LOC107588297,LOC107751801,LOC107755770,LOC107693081)


Basic Information

Item Value
gene id kcnk13
gene name kcnk13,LOC107680770,LOC107588297,LOC107751801,LOC107755770,LOC107693081
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 35921481 ~ 35934896 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673233.1
tgccgCTCCGATCAGCTGAGCTTCAGTCGAGCTGCAGGAGTTCAGGCTGAGAGATGCGCTCTGATGGATCTTCTGATCACAGGTTCCATCACACGTGAAGACCACCAGTGATGGCTAGCACGCTGAGCTGTAGGATGTGGACCCCCCGCTGTGTCCTGTCACGGCCGGGACATGATGGCATGCCGAGGGTCAGGCTGCTCGGGCTTTGCCCCCGTGAGCCAGGACACAGCGCGGTTCGCCATGCTGGCACTGCTCATCCTGCTGTACCTGCTGTGCGGCGCCGCCGTCTTCTCCGCCCTGGAGCAGCCCAAGGAGAAGCAGGCCAAGGCCCGCTGGATGCAGAGGTTCGAGAACTTCAGCCAGAAGCACAACCTGAGCCGGAGTGACCTGGAGAGCTTCCTCAGGCACTATGAGGAGGCCAGCATGGCCGGCGTGAGGGTGGATGGACTCAAAGCTCGCTGGGATTTTCCTGGAGCGCTGTACTTCGTGGGTACGGTGGTGTCCACTATCGGCTTTGGGATGACCACCCCAGCCACGGTCGGCGGCAAAATCTTCCTGATCTTTTACGGACTAATTGGCTGTGCGGCGACTATCCTGTTTTTCAACCTGTTTCTGGAGAGAATTATAACCGTGCTGGCCTTCGTGCTCAAGTCCTGCCATGAGGTTCAGCACCGGCGCAAAGGGGTGCTACCTCACGACGGAGGACAGGGACCAGGGGACATGCGGCACCGCGGGGAGGACAGTTTAGCGGGGTGGAAGCCGTCGGTCTACTGCGTGATGCTGATCCTCTGCGTGGCGTCTGTGATCATATCCTGCTGTGCCTCGGCCATGTACTCCTCCATGGAGGGATGGGCGTACTTGGACTCTCTGTACTTCTGCTTTGTAGCTTTCAGCACCATCGGCTTCGGGGACATGGTCAGCAGTCAACGGACCTCCTACCAGAGCCAGACTCTCTACAGCCTGGgcaatttcttttttatcttgatGGGCGCATGCTGCATTTATTCGCTCTTTAACGTCATATCCATTGTCATCAAACAAGTCCTCAACTGGCTTCTGAAGAAGCTGGAGATACCCTGCCGACACTGCCCCAGAAGATCTATGAGGCCGGGCAGGAACGCGGTGGTACCCGGCCACTTCCGGACGCGCGTCCGCAACATCTCCATAGATACGGACGCCGTGAACGAGAGTGAAACAGACGGCCGCAGGATGTCCGGGGAGATGATCTCCATGCGAGACTTCCTGGCCGCCAATAAGGTCAACTTGGCCATCATGCAGAAGCAGCTTTCGGAGACGGCCAACGGCCATCCACGACCATCTGGCTCCTCCAACCGGCACAATGATTTCTCTGGTGGAGTCGGAGCTCTGGGCATCATGAACAACAGACTGGCTGAGACCAGTGTGGACAGATAAGTCCGACATGACTGCTGAAGAAAACTGTGAGGCTGTATCGTACTGTTCATGCTGCAGGTTCACGTACAGAACCTGCTTTAGGGCAGTTAGCCAATTCTCtgccttttttatttgtgaaccTGTGCAGTACTGTAGCTAAAAAAAGCCTCCATAGCTGCTATAAATGCGTGAAACATAAGTGGAACAGAAGCTCAGGTGTGGTTAGAAGAGGCTTTGCTGTATAACAGTAGGCAGAAtaatgctgcattccatttaaACTTAAATCGGATGGCAGAATTTCTGTGTTTTAAGTAGAAATGTAAAGATTTCAACTGTAACACCCTCACAACCTACGTAATTAAGCCTTAAATAGCATGTTAGCCTCGTTACTAACAGCCATGTTAAAGCCGCAAAGTTCACATCAGCTGGATTCTGCAGAATTTAAGTGAGTGAGCTAATAGTGGTAAAGCTAATAACAAACTTTGGCAGATTTAGAGTGCGACTGTCAGCAGAGATGCTGATGCTGTTTTTACTCGCTGACAGTTGTTGACAGTGTCAATGAACCTTGCACTCATTTAGGGGGTATCCAAAGTAATCCTACACTGCCTTTTTCTAATTCCTCCATTTGCTCCATTGGCTTTTGGTCCACCAATACCGATAAGAAGCAAATCTACACAGTATGCTAACCATGTGTTTTAATACTATGGTATACTATATATGGTATTACTGCTGCAACCCTACACACAAGTCAGATTTTCTACTCAGaaagttcagaatccaagatggctgctcTGCAACTCAACAGTAGTAAAATCAGCAGCTAGTATTATgtattaaatacagtttattaacaTTTCTATCTATTTGTATCACATTAAATAAGCTGTACACTCAGTACTGTCCAACTTTTATATGTGGACCATGTTTTCATGGTGTTCAATTACAAcaacctgggacaatgctaacaatgctaacatgGAGCATAAAAATTGGAAGATATGTTGGTTAGATTCAACATAAAACACTGGAAAATGATGGTCAAACCATTTTTGGTAAACTTTAGCTTAAAATTCTTTagctcaatgttttttttttttaatgtaccaTTATCTCattgtttaactgttatatcaCCCAACTTTCAAGCTAAATGAAATGCAGCATTAGTCTCTTTCTACTACAAGTGTATATAAAGTTGGGTTCGGCAGTAAGCTGAACTAAGCCTTTATAAAGTCTGGAGACCAATGATCAGTGTTCCTCACTTCCACTCTTCCTCTAAGAAGGTTTAATCTGCTTGCCTGGTGGCCATTATATCGTAAACTCTGTTAGAACTACTGCACTTTGAAATGAATAACGGTTCGTTTACACTCCCTTTACATACAAAAATGGATATGTTCGTTTTAGACAGAAAAACCTTCAATGCCCTCCTGCTTCTACTGTATGTGTGCTTTACATTGACATGGATGTTAAACAGTACATCCACTAGAAGGCAGTTTATAGAACCAGAAGTTTTTTTAACAAGCAACTACAAACATGGTGACGGTAGAGCAGGGTGTGATAATAGCTGAGTCCAAACGTTGAGGgtgcagctgatgtatccttccaagCCGATGGTTACCCACAGTTCCACCTAGGGGTGGGATAAggaaataccaggaattatggatttattggtgttggATTCACAGAAATTTACAACCAAT

Function

symbol description
kcnk13 Predicted to enable potassium ion leak channel activity. Predicted to be involved in potassium ion transmembrane transport and stabilization of membrane potential. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: potassium channel subfamily K member 13

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
K04922 KCNK13, K2P13.1; potassium channel subfamily K member 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673233.1 True 3095 mRNA 0.47 3 35921481 35934896

Neighbor

gene id symbol gene type direction distance location
LOC103039887 LOC108437743 coding downstream 9636 35891077 ~ 35911845 (-)
LOC103031708 LOC103031708 coding downstream 203269 35694549 ~ 35718212 (-)
LOC103042065 LOC108437746 coding downstream 288726 35607086 ~ 35632755 (-)
scaf8 scaf8,LOC107749595,LOC107675315 coding downstream 321194 35557208 ~ 35600287 (-)
tiam2 tiam2 coding downstream 410736 35348184 ~ 35510745 (-)
tdp1 tdp1 coding upstream 34741 35969637 ~ 36045110 (-)
adck1 adck1,LOC107740534,LOC107680795,LOC107751735,LOC107676278 coding upstream 1209601 37144497 ~ 37395219 (-)
slirp slirp coding upstream 1465692 37400588 ~ 37403021 (-)
hhipl1 hhipl1,LOC107740569,LOC107668615,LOC107680789,LOC107588281 coding upstream 1666512 37601408 ~ 37617010 (-)
vrk1 vrk1,LOC106602366 coding upstream 2730229 38665125 ~ 38698331 (-)
G86032 NA non-coding downstream 18008 35903069 ~ 35903473 (-)
G86022 NA non-coding downstream 33767 35879400 ~ 35887714 (-)
G86027 kif13b,kif13ba,LOC108437739 non-coding downstream 64373 35853638 ~ 35857108 (-)
G86026 LOC108437739,LOC107680773,LOC107751739,LOC107588271,LOC107693111 non-coding downstream 67934 35851774 ~ 35853547 (-)
G86024 kif13b,LOC108437739,LOC107751739,LOC107583481 non-coding downstream 77834 35839946 ~ 35843647 (-)
G86121 NA non-coding upstream 227636 36162532 ~ 36164252 (-)
G86203 NA non-coding upstream 467616 36402512 ~ 36402721 (-)
G86205 ston2 non-coding upstream 499814 36434710 ~ 36454220 (-)
G86210 NA non-coding upstream 537021 36471917 ~ 36474032 (-)
G86211 NA non-coding upstream 539175 36474071 ~ 36476268 (-)
G85902 tfb1m other downstream 626447 35288232 ~ 35295034 (-)
daam2 daam2 other downstream 1449876 34274391 ~ 34471605 (-)
rbks rbks,LOC107553733,LOC107656748 other downstream 1908919 33955195 ~ 34012562 (-)
G85618 slc4a1ap other downstream 2081852 33834012 ~ 33839629 (-)
G85550 NA other downstream 2402810 33509680 ~ 33518671 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other upstream 654008 36588904 ~ 37101581 (-)
G86432 NA other upstream 2047978 37982874 ~ 38069052 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other upstream 3873234 39808130 ~ 39858569 (-)
LOC111193261 NA other upstream 4598472 40533368 ~ 40536334 (-)
LOC103044865 NA other upstream 4827776 40762672 ~ 40770501 (-)

Expression


Co-expression Network