tbc1d9 (tbc1d9,LOC107598515,LOC107594295)


Basic Information

Item Value
gene id tbc1d9
gene name tbc1d9,LOC107598515,LOC107594295
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 4510939 ~ 4590452 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU290088
tctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctttttctcactgtcACTGGCACCTGCACTTTGAGTTATTTTCTTGACATAAAAAGGAAATGTGTACTTTACTTTACAACAGGGGGGATGTAGCCCACTGCAGTGAGTGGTAAGCGATCAGGTGATATGTTGGGTATATATTGGGCTGTTGGACTGTATGAGGCTGCGATACTCAACACACTCCTCTCTGTGAAGAGAACAAaagtttacagatttatttCTTTCTCAGTTCATTTTCTCACCCATTACGGGCATGTGGCATGGCTGTCCACTTTTTATGTAcgttttgtttgcttttttatttgaactCGGTTtggatttactgttttttttatgctgctGTTTTATTAGTTACTCTGTGGATGGTTTTAAGtgtactgtaaatgattcactctgaaataattaaaagaacagAAGGAATTATCCAATGCTAC
>XM_022684409.1
GAGGGGAAGCGCGTAGAGCGGAGGGGGCGGTGCgctctgatacaacagctccATAATAACCGCTAGAATATCACCGACTTGCGCTAAGATCAGAGACGCATCCACGACGCACATGCGACGCGCGAGCAAACGGAGTGTTTACCGCGCCTGACGGACTGAGGCTCGTGCGTAAAACCctgtagagagagtgtgtgagtgtgtgcattgACTGTGTGTaagcgtgtgagtgtgttgagtgtgtaagtgtgtgttcagGGGGGTTAATGGCTGGATGCACTCTCTCACCCTATAAAGACAGTGCGCGTCTCGCGCGTCGCGGCTAATGTCTCTTTGATCAGGTGTGAAATTCTATCGTGGCGTTTTTGATGCGGGAGCGCGCGGCCGGCGCAGATCGGTCCCAGATCGGTGGAGGTTTGGGTTTTATTGTTTGCGTGATTTTGATGCCCGCGTAGCGCCGGACTCCGGCTGAAGAAGATGTGGGTGAACCCGGAGGAGGTGCTGCTGGCCGGCGCGCTGTGGATGACCGAGCGGGCCAACCCGTACTTCATCCTGCAGAAGCGGAAAGGACACGGGGACGGCGGCGGAGGGCTGGCCGGTTTGCTGGTAGGAACTCTGGACGTGGTGCTGGACTCCAGTGCCCGTGTGGCCCCATATAGGATCCTTTACCAGACTCCAGACTCGCTGATCTACTGGACCATCGCTCATGgGAGTTCTCGCAGAGAGATCACCGAACACTGGGAGTGGCTGGAGCACAACCTGCTGCAGACTCTGTCCATCTTCGAAAACGAGAACGACATTACCACTTTCGTCAAGGGCAAGATTCAGGGAATTATTGCAGAGTACAACAAAAACCATGACATTAAAGAAGACGACGATACAGAAAAGTTCAAGGAGGCCATCACTAAGTTCAGGAAGCTGTTCGGGATGCCGGAGGAGGAGAAGCTGGTGAACTATTACTCCTGCAGTTACTGGAAGGGGAAGGTGCCCAGGCAGGGCTGGCTCTACCTCAGCATCAACCACCTCTGCTTCTACTCCTACCTGCTGGGCAAGGAGGTCAAGCTGGTGGTCCGCTGGGCAGACATCACACAGCTGGAGAAGAATGCCACTCTGCTGCTGCCCGATATGGTGCGGGTTAGCACGCGGTGCAGCGAGCACGTCTTCTCCGTCTTCCTCAATGTTAACGAGACCTTCAAGCTCATGGAGCAGCTGGCCAACATCGCCATGAGACAGCTACTGGACAACAAGGGCTTCGAGCAGGACCGCTCGCTGCCCAAACTCAAGAAGAAGTCGCCCAAGAAAGTGTCGGCCCTCAAGAGAGATCTGGACGCCAGGGCTAAAAGCGAGCGTTACCGGGCGCTCTTCCGCCTTCCCAAAGACGAGAAGCTGGACGGCCACACGGACTGCACGCTGTGGACTCCCTTTAATAAGATGCACATCCTCGGCCAAATGTTCGTCTCCACCAACTACATCTGCTTCACCAGTAAAGAGGAAACCATCTGCAGCCTCATCATCCCCCTCAGAGAGGTGACCATCGTAGAGAAAGCAGACAGCTCCAACGTCCTGCCTAGCCCCCTGTCCATCAGCACCAAGAACAGAATGACCTTCCTGTTTGCCAACCTGAAGGATCGAGACTTCCTGGTGCAGAGAATCTCCGACTTCCTGCAGCAGACCTCCTCCAAGATCTACTTCGAGAGGGAGATCACAGGCAGCCTCAACAGCTCTGATGATGAGgtgTACTCCCAGCAGGGCAGTCTGCTCTCCTGCAGTCCTCAGCGCAGCAGTCTGGGCTCGGAGGGCGAGAGCGAGCGCCAGTTCAACCTCAACGACAACAGCGTTCCCACGGCAACACAAGCCCTCATGACCATGTACCGCCGGCGCTCACCCGAGGAGTTCAACCCAAAACTggctaAGGAGTTTCTGAAGGAGCAGGCCTGGAAGAATCACTTCACTGAGTACGGGCAGGGAGTGTGTATGTATCGCACAGATAAGACCAAAGAGCTGGTGCTCAAAGGCATCCCTGAGAACATGAGAGGAGAGCTGTGGCTGCTGTTCTCTGGGGCGATTAATGAGATGGCCACTCACCCGGGTTATTATGAGGATTTGGTGGAGAAGTCCATGGGGAAGTATAATTTGGCTACAGAGGAGATAGAGCGGGATCTTCACCGCTCGCTCCCGGAGCATCCGGCCTTTCAGAACGAGATGGGCATCGCTGCCCTCAGGAGAGTTCTGACCGCCTACGCCTTCCGCAACCCCAACATCGGATACTGCCAGGCGATGAACATCGTGACGTCAGTTTTGCTGCTCTATGCTAAAGAGGAGGAGGCGTTCTGGCTGCTGGTGGCTCTGTGTGAAAGGATGCTGCCGGACTACTACAACACCAGAGTCGTCGGAGCATTAGTAGATCAGGGCGTGTTTGAGGAGCTGGCCCGTGTCTACGTTCCTCAGCTGTACGACTGCATGCAGGAGCTGGGCGTGATCTCCACCATCTCTCTGTCCTGGTTCCTCACACTCTTCCTGTCAGTCATGCCCTTTGAAAGCGCCGTGGTGGTGGTGGACTGCTTCTTCTACGAGGGCATCAAACTCATCTTCCAGCTGGCACTGTCCGTCCTGGATGCCAATATTCATCAGCTGCTCAACTGCAAGGATGATGGAGAGGCCATGACTGTGCTGGGCAGGtcagacatgagacatgagaggATTAGTGCACTGTGTATTGAacagcatatacagctctggaGAGCATTAGTAGATCAGGGCGTGTTTGAGGAGCTGGCCCGTGTCTACGTTCCTCAGCTGTACGACTGCATGCAGGAGCTGGGCGTGATCTCCACCATCTCTCTGTCCTGGTTCCTCACGCTCTTCCTGTCAGTCATGCCCTTTGAAAGCGCCGTGGTGGTGGTGGACTGCTTCTTCTACGAGGGCATCAAACTCATCTTCCAGCTGGCACTGTCCGTCCTGGATGCCAATATTCATCAGCTGCTCAACTGCAAGGATGATGGAGAGGCCATGACTGTGCTGGGCAGAACAATAATAACTAAACAGAAACAATGTGAAGAGACAATAaataactttataataactctttctctctcaatttctctttttctgcaggtTCGGACCATCATAACAGAGACATCCTTCACCATAGATGAACTGGAGGAGCTTTACTCACTTTTCAAGGCAGAGCACTTGACCAGCTGTTACTGGGGTGGCACCAGTAACCCTATGGATCGGCACGACCCCAGCCTGCCGTATCTGGAGCAGTACCGCATGGACCTGGAGCAGTTTAAGAGCCTGTTCACTGTTCTGTTCTCCTGGGCCAGCGGGACACACACTGACAGCCTGGCCATGCGCTTCTTCCGCCTGCTGGACCAGAACGCTGACGCTCTCATCAACTTCAGAGAGTTCATCACCGGCctggGAGTTCTGTGCCATGGTGACCTCACTGAGAAGCTCAAACTCCTCTACAAGATGCACGTACTGccagagCTGCATCATGAACAGGATGAGCCGGATTCCGCTTTCGAGGCCACGCAGTACTTCTTTGAGGACATTACCCCAGAGACGTCCCACGGTCTGGACCACAAGAGCAAAAATGATAAAGATGATGGATTTGTGAGAGTCACATTCAAGAATGAGAAAGTGAAGAAAATGCACACGCCAGACTACCGCACCTACTTACGACTGTGGAACCAGGAGACCAAATCCAAACCGGAGAACATGAAGAACCTCCCAAAACTCAACCAGGGTCAGTTCATCGAGCTCTGCAAGACCCTCTACAACATGTTCAGCGAGGACCCCAACGAGCAGGAGCTGTACCATGCCACAGCCACCGTCACCAGCCTGCTGCTGGAGATGGGTGAGGTGGGGAAGCTCTTCTGCAGTCCCTCCAgcaaagaggaggaggatgatgacGAGGATGACGAGGAGGAAGAAGAGCGCCCCCCAGTGAACAGGAGGAAACAGCAGAGAATCCGCGGAGACTCTTTCCAATCATCTACCGAGGAGACCCGGGGCAAGCTCTCCAGCACAGGGTCTGGTGGTGCAGCTGAGGGCGAGCTAAACTCCACCTGCATCACAGGGCCCATGGAGGACATTAAGCTGGAAGACTCTTCGCCCAAAGACAATGGCACATCTTCAGCCATGCTCATCTCCGACGACGAGACGAAAGACGACACGTCCATGTCCTCGTACTCCGTCCTGAGTGCCGGCTCTCACGAGATGGACGACAAGCTGCAGTGCGAAGACATAGCTGAGGATACAGTGCTGGTGCGCAACAGTGAGCCCCACGGCGGAGCTGGGCCTCGTGGTGGAAGTGGGCCTCACGGTGCAGGTGGGCTTCCACACAGTGCTAGCATTGATAAAGACTGGGCTATCACTTTCGAGCAGTTTTTGGCCTCCGTTCTCACTGAACAGGCCCTGGTCCAGTACTTTGAGAAGCCTGTGGACATCGCAGCTCGTATTACCAATGGAAAAAATGTGCGGAAAGTTGGTCAGGCACACCTGTCCGTCAGTGACTACGAAATTTCGATTTCAGGCTAACGAGCAGGTCTGCCAATGCAATTCTATTGTCTccaatgtacattttaaactgtacagcaaACTGATGACATTAAAAACGAATAAACAGGGCAGATTCTACATATTTACACACTTCTCATCTCCACGCTCATCTCAACTACCTTTATCCCTAACCTGGCTTTAGACCAGAACTTTAAAGTCCGTATATTTCTGTAAGACACTGGATATTTTGgaaagaaatgaaatgaaaagaaaagaaaagaagaaacggCTGTAGCCTCGTGTATTTTCTCTAATGTGAATTCACCCTGAAGAATCTGAAGAGTCAGAAGAAGGACTGTGAATGGATCTGATCTTTTTACCCACAGGAAGGCTGAATGGACCTtcacacacattattattattgttattattattaatataatgatcAATATGCTACAGTGCGCTTGGTGTACTTTATATGGAGTAATGTTGATTACTAACAGTATGTTAAACAGGTAGACTGTGTATAGTACGTAGTGTTAATAGTGTCTACACTTATACTGCCTAGTCAGGGAGGGACCGGTCCTTGTCTTTGAAACTTGAAAGGACGTAGTTCGGGACACTGGATTTAGAGTTTAGGGAATACTTTGCCCAAAAGtgcttaaaactcttaaaagtgaaggttctttaaatgttttttttgagtGATACCATAGAAGAACTGCCTTGACTGAAGTCACCAATCCCTTTGCCCTTATTTTCTCTAACAGTTATGTATAACAGTGGGGGAAATGAAAATGGGTTTATAagagatattgtttttttaaaggtctgGAGATCCTTCAGTTGATGTAAAggatctttacttttttttttttttttttttttttttttggcttagtCGTCTCTATtaaagacatgttttttttatggaatcAAAGGTGGGTTTATAAGGTTCTTTGATGGCATCactcaaaaaaaacattgttaacagtagaggtgtgtgtgaagAACCTTTCAAATAACTAGAAAACCTTTACTCAATGCAATATATCTGTAATACATCTAATTTGTGGATTTTAGATCCTTCATCTTCACACATCTCTATTACACACTTGgttttatatgcttttttttggGTGATGCCATAGAAAGACCAATCACCTCGGGTTCAGTAAAGGATGATGTCTCTAAAGTGTGAATGTGAGAaaccttttaaagctctaaagaACCTTTAGCTGACGTTAAGCATCACTCACACATCTCATGTTACAAACTTGAGTCTTTAAAGGACCAAAGGTGCTACAAATCGTTTTGCATGGTTCCATAATTGAACCACTTTTGGGTCTATAATGAACTGTACTTTTATGGTCCAAAAAACATTACTTGCTGTGAAAGTTCTTCATCAATATAAAGATCCTGTACTCTTACACACCAATGTTTTCCCATTTTAAACACAATTCCTTTCTTAAACCAAAGGTAATGTAactttaaatggttctttaaaggATATACCATAGAATAGCTGGTTTTGTTTCCTTTAAGGATCATGTTTGAAGGGTTCGTCATATTCAAGCATCTATTATACAAaggtccaaagaatatttaattgatgtaaagctttttttagccattttatgtttgtttttttacactcagAAATCTCAAACATTACAAACAAATTATTTGTGGAACCAAAAGGTGGTTCTTTAATGGAGCTAAAGGTGCTTCAGAGAGAGATCTTTGGGTTATGCCATTATAGAACCACCTGTTGTTTCCAcaaagaaccatgtttgtaaaGGACCATTTAAAGGCCTAGAAAAAACAATTTCTTTACCAAATTAAAGgttcttttttataaacatggctTTTTATCTAAAGTTGGTTCTTCTTTAATGAACTCACTCAAAGAACCCCAACCTTAAATCACcttcatttttaagagtgtacagCTGTGAGTAATAAATCTGAGCTGCTCGGGTTTGGTTAACATTATGCAAATCCAGTTACTGTTAGCCACgttagcatttctgaggtaaacgATTCCCTCAGCATCATAATCTCACAGATCTTGAATGTAGGAAACGTGAGTCGGGTAAAAACCTGCTTTTAAGggatgtttttgatgtttttgagaGTTTTTAAGAGCATGAGTGGACCGagtggaagaggaggaggactgAAATGACCAAATTCCCTGAATTTAGAGAGTTAGCATGGCTGTCCTGATTCAAACTGATCCCACACTTACCTGTTGTGGGAAATCACTACGATAGACGCTCATGTACAGATATCCACTCTTCTTATTTGACAAATAGTGCACTAGATACACCTGAAGGCTTTTACTCTATAGTGTAATGTGTGTCAAATAGGAAGCCATCTTGGATTCGGCATCTttagctctatctctctctcttgctctctctattcctctctctctttctctctctctctctctctctctctctctttctttttctcactgtcACTGGCACCTGCACTTTGAGTTATTTTCTTGACATAAAAAGGAAATGTGTACTTTACTTTACAACAGGGGGGATGTAGCCCACTGCAGTGAGTGGTAAGCGATCAGGTGATATGTTGGGTATATATTGGGCTGTTGGACTGTATGAGGCTGCGATACTCAACACACTCCTCTCTGTGAAGAGAACAAaagtttacagatttatttCTTTCTCAGTTCATTTTCTCACCCATTACGGGCATGTGGCATGGCTGTCCACTTTTTATGTAcgttttgtttgcttttttatttgaactCGGTTtggatttactgttttttttatgctgctGTTTTATTAGTTACTCTGTGGATGGTTTTAAGtgtactgtaaatgattcactctgaaataattaaaagaacagAAGGAATTATCCAATGCTACATATCAAAAA

Function

symbol description
tbc1d9 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Is expressed in EVL; central nervous system; cranial ganglion; and trigeminal placode. Orthologous to human TBC1D9 (TBC1 domain family member 9).

NR:

description
PREDICTED: TBC1 domain family member 9

GO: NA

KEGG:

id description
K19951 TBC1D8_9; TBC1 domain family member 8/9

RNA

RNA id representative length rna type GC content exon number start site end site
TU290088 False 493 lncRNA 0.39 2 4535052 4590442
XM_022684409.1 True 7419 mRNA 0.47 20 4510939 4590452

Neighbor

gene id symbol gene type direction distance location
rnf150 rnf150,LOC107746087,LOC107729769,LOC107700883 coding upstream 26906 4431495 ~ 4484033 (+)
smarca5 smarca5,LOC107703846,LOC107594298,LOC107757072 coding upstream 849645 3640553 ~ 3661294 (+)
LOC103021981 NA coding upstream 1011109 3479484 ~ 3499830 (+)
LOC103022278 NA coding upstream 1035843 3454948 ~ 3475096 (+)
frem3 frem3,LOC107550584,LOC107654895,LOC107734585 coding upstream 1069879 3376851 ~ 3441060 (+)
ucp1 ucp1,LOC107703842,LOC107700810 coding downstream 10014 4600466 ~ 4609805 (+)
LOC103038807 LOC108440741,LOC108262861 coding downstream 36996 4627448 ~ 4644929 (+)
LOC103047605 NA coding downstream 72898 4663350 ~ 4731385 (+)
fam13a fam13a coding downstream 146801 4737253 ~ 4864811 (+)
LOC103040043 NA coding downstream 377512 4967964 ~ 4978603 (+)
G213721 NA non-coding upstream 18538 4491078 ~ 4492401 (+)
LOC111195945 NA non-coding upstream 102426 4407413 ~ 4408513 (+)
G213694 NA non-coding upstream 146642 4363884 ~ 4364297 (+)
G213640 NA non-coding upstream 263506 4246745 ~ 4247433 (+)
G213639 NA non-coding upstream 266513 4244074 ~ 4244426 (+)
G213752 NA non-coding downstream 262656 4853108 ~ 4857839 (+)
G213748 NA non-coding downstream 281587 4872039 ~ 4877873 (+)
G213776 NA non-coding downstream 438556 5029008 ~ 5032933 (+)
G213780 NA non-coding downstream 457596 5048048 ~ 5049127 (+)
G213892 NA non-coding downstream 486034 5076486 ~ 5121657 (+)
G213715 znf330 other upstream 81977 4398585 ~ 4428962 (+)
inpp4b inpp4b,LOC107657998 other upstream 143794 3900242 ~ 4367145 (+)
G213555 NA other upstream 821947 3688569 ~ 3688992 (+)
LOC103044168 NA other upstream 1152745 3293928 ~ 3358194 (+)
LOC103042715 NA other upstream 3159543 1340751 ~ 1351396 (+)
G213891 NA other downstream 582617 5173069 ~ 5174096 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other downstream 758715 5349167 ~ 5359732 (+)
G214006 NA other downstream 930732 5521184 ~ 5521675 (+)
G214175 NA other downstream 1693329 6283781 ~ 6284368 (+)
LOC111196031 NA other downstream 1808624 6399076 ~ 6409068 (+)

Expression


Co-expression Network