inpp4b (inpp4b,LOC107657998)


Basic Information

Item Value
gene id inpp4b
gene name inpp4b,LOC107657998
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 3900242 ~ 4367145 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU290044
tcaGATTTGGGGACATATCGTTACAGGAAAGGATAAACCAGAGGAATTTCGACATTCTAGAGGCTTACTACAAGTCACTGAGTGACAAGGTGCCATTAGATTGCCTGCCCTGTTTTCAGACACAGACTGATGTCAAAGAGTTACTTGAAACACTGGGTCAGAACGTAGTGACCAAGAAGAGGAAGAATGTGGAGATTCTCTGGCTTGCTGGAGCGATCTGCCGGCGGCTGAACGGTATCCGCTTCACCAGCTGTAAAAGTGCCAAAGACAGGACGTCCATGTCAGTAACGCTGGAGCAGTGCGCTCTTCTGAGGGACGAGCATCAGCTCCACAAAGACTACTTCGTCCGGGCCCTGGACTGCATGCGGAGAGAGGGCTGCCGGATTGAGAACGTGCAAAAGAATATAAAATGCAGGAAGTATGCTTTTAACATGCTGCAGCTGATGGCATTCCCCAAGTTTTACCGCCCACCGGAGGGGACGTACGGGAAAGTGGACTCGTGAGACAAGACACCATGGACTCCTCTTCATCTTCACTTGGTTGTTGTTGgtattattgttataattattgttatttactccagttcatgtttttaaaaaaataatgtgtgttCAAAAGTCACCAAGatgtaaaaaacttaa
>TU290045
tcaGATTTGGGGACATATCGTTACAGGAAAGGATAAACCAGAGGAATTTCGACATTCTAGAGGCTTACTACAAGTCACTGAGTGACAAGGTGCCATTAGATTGCCTGCCCTGTTTTCAGACACAGACTGATGTCAAAGAGTTACTTGAAACACTGGGTCAGAACGTAGTGACCAAGAAGAGGAAGAATGTGGAGATTCTCTGGCTTGCTGGAGCGATCTGCCGGCGGCTGAACGGTATCCGCTTCACCAGCTGTAAAAGTGCCAAAGACAGGACGTCCATGTCAGTAACGCTGGAGCAGTGCGCTCTTCTGAGGGACGAGCATCAGCTCCACAAAGACTACTTCGTCCGGGCCCTGGACTGCATGCGGAGCAGTCGGCTGGCCCAGGGAGAAGGTGCCCAATGGGACGACCCTGAGGCCGGCTCAGTAGCCAATCACAAGCCGCCGTCTCGCCACTTCTACCCAATCGCTCTCCTGCTCGTTAGCTCACACCTGCTGGTGGTGTGGCTGATTTTAAGTCTTGTTTTTCTGCTTGCTAAATATCAATAAACCGCTGATTA
>TU290046
tcaGATTTGGGGACATATCGTTACAGGAAAGGATAAACCAGAGGAATTTCGACATTCTAGAGGCTTACTACAAGTCACTGAGTGACAAGGTGCCATTAGATTGCCTGCCCTGTTTTCAGACACAGACTGATGTCAAAGAGTTACTTGAAACACTGGGTCAGAACGTAGTGACCAAGAAGAGGAAGAATGTGGAGATTCTCTGGCTTGCTGGAGCGATCTGCCGGCGGCTGAACGGTATCCGCTTCACCAGCTGTAAAAGTGCCAAAGACAGGACGTCCATGTCAGTAACGCTGGAGCAGTGCGCTCTTCTGAGGGACGAGCATCAGCTCCACAAAGACTACTTCGTCCGGGCCCTGGACTGCATGCGGAGTCGGCTGGCCCAGGGAGAAGGTGCCCAATGGGACGACCCTGAGGCCGGCTCAGTAGCCAATCACAAGCCGCCGTCTCGCCACTTCTACCCAATCGCTCTCCTGCTCGTTAGCTCACACCTGCTGGTGGTGTGGCTGATTTTAAGTCTTGTTTTTCTGCTTGCTAAATATCAATAAACCGCTGATTA
>XM_022684408.1
CCTGTCCTTCTGTccttctttctcctcctctccctgttcCCTCGCtcctgaccccccccccccatccctcCTTCTCCTGTTTTTCTCCACCCCCTCCAGCCTGgcgtggttgtgtgtgtgagttttccTCGATGCTGTGTGAGGGAATTCTgggagtgaggtgtgtgtggatCAGCACCGCGGACAGCGCTGGACTGGATTACTGAGGGACTGGGGGGATATTTCTACAATGGAGGAAGACAGTCTGGCAATAGCGGCCACTGCCCCTCTGTCTCACACTGGTGTCATTCTGATCCCGAGAATTCCCCACCTGGAGTTCTGTCTGGcctgtAGGGAGTTGGTGCCAGAGTTCAGGGACAGAAAGCCGAATGCTCTGGTGCAGGTGGCGGTGTTGGATGCTCATGAGCACGGGATCATCGCCTATGCCTGCACTGAGGTGGTGGAgGGAACAAGAGACCCTCTGTTTCTGACGGGCGTGAGTCTGTCCCCCGACTGGCCCGTCTACGAGGAGAGCCTCATCAAGCTCAGTGTGTACGATGTGAAAGACAAGAGCCACCAGACGagcagtTTTCTGGGTAGTGCTAGCTTCTCTGTAGCTGATCTCCTCAAGTCCAAGGACCAGCAGCTCTCTCTCAGCCTGAGGACGGCAGATGATTCGGCAGCTGTGGGGACGGTGGTGGTGTGCAGGCTGAAGATGGGGGAGATAGAGGATGGCGAGGTGGACCACATCGCTGCTGACACACACCAGAAGTGCACTCTGGTGTGTGAGGCGTCTCATGGGACCACAAATGACAAGGATAACGGGCCACTGATGAGTGCAGTGTTTAAGAATCCGGTGTGTAAGGTGTACAGGTTTCAGACGGTGGACAGTAAGTGGATGTTGGTGAGGGAGCAGATGGCGGAGTGTACCCTGTCCTTCAGCATTCCCATGCAGCTCCTCAGCCTCTTCATCCAGGAGGACAGCCGCAGGATACAGGACCTGAATGATCTGGGTGAACTCTCCCCACACTGGGATAACCTGAGGAGGGACGTCATCGCCCGCTACAGTCAGCTCATTAAAATCTACCAGGAGACACTGGCTGAGCTGGAGAAACTCACCGGTCCGGTGTTCAAGCCCAGCTGCAGCAAAGCCCAGAAATACCTGGAGTTCATCCCCATCAATCTGCACACGCAGCGCATGAGGGTCACGTGTCCCAGGAAAACAGaCTCCTTCTATGATGTGATCACAGTTGGAGCCCCAGCTGCCCACTTCCAGGGCTTCAAGAACGGAGGCCTGCAGAAGCTCCTCAGCAGATACGAGGCTGAGAAGAAGAGCTACAGTACAGCGTATCAGTGCATCTACTACTCTCCAGAGCACACAGCCAAGGCCAGGGAGATCCTGAGCACGGTGGCCCAGCTGCAGCCCCTCATCTGCGGCCTGGCTGACCGTCTGCTGCTGGCCGCACAGCAGCGCTCCAGCCACAGCCTGCGGGAGGCGCTGAAGAGCCTGGCTGAGAAGACAGAGCAGTTTGTGCACGCTCTGAAGGATGAGCTGGTAAAGAGCGCTCTCTTGGCTCTCCATGCTGCTCGGCCCGGCTATGTCAGCAAGAGCCAAACATCTGGTCAGCCTGAGGCACACTCAACCCCAACACAACACCAAAACACAAACCCAAACCAGACTCCAGAGCCAGATGCCATCATCTGCAACAACGTGGCTGGCTCCCAGACTCCCCCGAAAAGGGAAAATTCAACACCTCCTAAAAGCCAGGACATCCCTCACCACAAAGAATATGACGAGGAGGAATGGGACAGGGTGTGGGCCAACGTGGCGAAAAGTCTGAACTGTGTCATCGCTATGGTGGACAAACTGCAGGAGCAGGACAACAACAACCAGGACTCCACTCCTGACCAGACGCTGGCTGACGTCATCACCTCCCACAATCCTActgcaGATTGGAGGGATCAGCTCAGTCCGCTGGTGGTGGGGTTAAAGGACTGTGTGAGTGAGGTGGCAGAGAGAGCCAGCAAGTCCATGACGTTTGTGCTTCTGCAGGAGGCGTCGTGCAGCACTCCTCACGGCCTGCAGCTCCAGCAGAGACGGGACACAGTGTTCAGCCAAGCGCTGGCTGCATTGGCCTGCGGTTTCGTCATGCGTCTTTATGCTGGAATCGAGGATAAGGGCTTCCTCAGACAGCTGCATACAGTGGGAGTGGTGGCCCAGTTCGAGAGTCTGCTGAGCACCTATAGTGAGGAGATTGGCATGCTGGAGGACATGGAGGTGGGCATTTCCGACCTTCAGAGAGTCACTTTCAGAATGACAGAGGCAGCGTCTGATGACCCCAACAATCTGCAGCCCATTGTCAGTGGGAGACGGTGCCCAGCTTCAGCGCTGCCTGTGGGcagtcctgagccgagATTTGGGGACATATCGTTACAGGAAAGGATAAACCAGAGGAATTTCGACATTCTAGAGGCTTACTACAAGTCACTGAGTGACAAGGTGCCATTAGATTGCCTGCCCTGTTTTCAGACACAGACTGATGTCAAAGAGTTACTTGAAACACTGGGTCAGAACGTAGTGACCAAGAAGAGGAAGAATGTGGAGATTCTCTGGCTTGCTGGAGCGATCTGCCGGCGGCTGAACGGTATCCGCTTCACCAGCTGTAAAAGTGCCAAAGACAGGACGTCCATGTCAGTAACGCTGGAGCAGTGCGCTCTTCTGAGGGACGAGCATCAGCTCCACAAAGACTACTTCGTCCGGGCCCTGGACTGCATGCGGAGAGAGGGCTGCCGGATTGAGAACGTGCAAAAGAATATAAAATGCAGGAAGTATGCTTTTAACATGCTGCAGCTGATGGCATTCCCCAAGTTTTACCGCCCACCGGAGGGGACGTACGGGAAAGTGGACTCGTGAGACAAGACACCATGGACTCCTCTTCATCTTCACTTGGTTGTTGTTGgtattattgttataattattgttatttactccagttcatgtttttaaaaaaataatgtgtgttCAAAAGTCACCAAGatgtaaaaaacttaaaaagaatccatatacagtgtgtgtttgtatatacagtatttctacATTGTGTTCTTTGCActcatttatataataattaaagattatttgtaataaaatgtaatattattta

Function

symbol description
inpp4b Predicted to enable phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity. Predicted to be active in cytoplasm. Orthologous to human INPP4B (inositol polyphosphate-4-phosphatase type II B).

NR:

description
type II inositol 3,4-bisphosphate 4-phosphatase isoform X2

GO: NA

KEGG:

id description
K01109 INPP4; inositol polyphosphate-4-phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
TU290044 False 641 lncRNA 0.46 4 4344850 4367033
TU290045 False 559 TUCP 0.52 4 4344850 4363165
TU290046 False 556 TUCP 0.52 4 4344850 4363165
XM_022684408.1 True 3143 mRNA 0.53 22 3900242 4367145

Neighbor

gene id symbol gene type direction distance location
smarca5 smarca5,LOC107703846,LOC107594298,LOC107757072 coding upstream 238948 3640553 ~ 3661294 (+)
LOC103021981 NA coding upstream 400412 3479484 ~ 3499830 (+)
LOC103022278 NA coding upstream 425146 3454948 ~ 3475096 (+)
frem3 frem3,LOC107550584,LOC107654895,LOC107734585 coding upstream 459182 3376851 ~ 3441060 (+)
znf827 znf827 coding upstream 1002713 2723598 ~ 2897529 (+)
rnf150 rnf150,LOC107746087,LOC107729769,LOC107700883 coding downstream 64350 4431495 ~ 4484033 (+)
ucp1 ucp1,LOC107703842,LOC107700810 coding downstream 233321 4600466 ~ 4609805 (+)
LOC103038807 LOC108440741,LOC108262861 coding downstream 260303 4627448 ~ 4644929 (+)
LOC103047605 NA coding downstream 296205 4663350 ~ 4731385 (+)
fam13a fam13a coding downstream 370108 4737253 ~ 4864811 (+)
G213596 NA non-coding upstream 122770 3777194 ~ 3777472 (+)
G213594 NA non-coding upstream 154518 3745519 ~ 3745724 (+)
G213556 NA non-coding upstream 205870 3694071 ~ 3694372 (+)
G213551 NA non-coding upstream 212150 3623694 ~ 3688092 (+)
G213521 NA non-coding upstream 457149 3441930 ~ 3443093 (+)
LOC111195945 NA non-coding downstream 40268 4407413 ~ 4408513 (+)
G213721 NA non-coding downstream 123933 4491078 ~ 4492401 (+)
G213752 NA non-coding downstream 485963 4853108 ~ 4857839 (+)
G213748 NA non-coding downstream 504894 4872039 ~ 4877873 (+)
G213776 NA non-coding downstream 661863 5029008 ~ 5032933 (+)
G213555 NA other upstream 211250 3688569 ~ 3688992 (+)
LOC103044168 NA other upstream 542048 3293928 ~ 3358194 (+)
LOC103042715 NA other upstream 2548846 1340751 ~ 1351396 (+)
scrg1 NA other upstream 3388683 506101 ~ 511559 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227,LOC107676676 other upstream 3650511 229235 ~ 249731 (+)
G213715 znf330 other downstream 31440 4398585 ~ 4428962 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other downstream 143794 4510939 ~ 4590452 (+)
G213891 NA other downstream 805924 5173069 ~ 5174096 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other downstream 982022 5349167 ~ 5359732 (+)
G214006 NA other downstream 1154039 5521184 ~ 5521675 (+)

Expression


Co-expression Network